RNA–Protein interactions for RNA: ENST00000429895.5

PTPRF-206, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 1 (best)

Gene PTPRF, Length 6,312 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-206ENST00000429895 RPS24P62847 133 aaKnown RBP15.12■□□□□ 0.01
PTPRF-206ENST00000429895 ZDHHC21Q8IVQ6 265 aa15.12■□□□□ 0.01
PTPRF-206ENST00000429895 OR5AK3PQ8NH89 298 aa15.12■□□□□ 0.01
PTPRF-206ENST00000429895 SETD7Q8WTS6 366 aaKnown RBP15.12■□□□□ 0.01
PTPRF-206ENST00000429895 ZBED6CLQ96FA7 236 aaPredicted RBP15.12■□□□□ 0.01
PTPRF-206ENST00000429895 KIF20BQ96Q89 1820 aa15.12■□□□□ 0.01
PTPRF-206ENST00000429895 H3BSH0 61 aa15.11■□□□□ 0.01
PTPRF-206ENST00000429895 CCR8P51685 355 aa15.11■□□□□ 0.01
PTPRF-206ENST00000429895 ECT2LQ008S8 904 aa15.11■□□□□ 0.01
PTPRF-206ENST00000429895 CRTC2Q53ET0 693 aaPredicted RBP15.11■□□□□ 0.01
PTPRF-206ENST00000429895 QSOX2Q6ZRP7 698 aa15.11■□□□□ 0.01
PTPRF-206ENST00000429895 LGR4Q9BXB1 951 aa15.11■□□□□ 0.01
PTPRF-206ENST00000429895 WNT9AO14904 365 aa15.11■□□□□ 0.01
PTPRF-206ENST00000429895 ESR1P03372 595 aa15.11■□□□□ 0.01
PTPRF-206ENST00000429895 ATP5A1P25705 553 aaKnown RBP15.11■□□□□ 0.01
PTPRF-206ENST00000429895 CCNFP41002 786 aa15.11■□□□□ 0.01
PTPRF-206ENST00000429895 ABCA11PQ4W5N1 156 aa15.11■□□□□ 0.01
PTPRF-206ENST00000429895 ECHDC2Q86YB7 292 aa15.11■□□□□ 0.01
PTPRF-206ENST00000429895 FAM46DQ8NEK8 389 aa15.11■□□□□ 0.01
PTPRF-206ENST00000429895 NAT14Q8WUY8 206 aa15.11■□□□□ 0.01
PTPRF-206ENST00000429895 DUSP26Q9BV47 211 aa15.11■□□□□ 0.01
PTPRF-206ENST00000429895 GDAP2Q9NXN4 497 aa15.11■□□□□ 0.01
PTPRF-206ENST00000429895 PCDHGA11Q9Y5H2 935 aa15.11■□□□□ 0.01
PTPRF-206ENST00000429895 NRP1O14786 923 aa15.11■□□□□ 0.01
PTPRF-206ENST00000429895 ADH5P11766 374 aa15.11■□□□□ 0.01
PTPRF-206ENST00000429895 FOSL2P15408 326 aa15.11■□□□□ 0.01
PTPRF-206ENST00000429895 GNAZP19086 355 aa15.11■□□□□ 0.01
PTPRF-206ENST00000429895 ARCN1P48444 511 aaKnown RBP15.11■□□□□ 0.01
PTPRF-206ENST00000429895 PNLIPRP1P54315 467 aa15.11■□□□□ 0.01
PTPRF-206ENST00000429895 BTN3A2P78410 334 aa15.11■□□□□ 0.01
PTPRF-206ENST00000429895 IRF9Q00978 393 aa15.11■□□□□ 0.01
PTPRF-206ENST00000429895 CA9Q16790 459 aa15.11■□□□□ 0.01
PTPRF-206ENST00000429895 PGAM4Q8N0Y7 254 aa15.11■□□□□ 0.01
PTPRF-206ENST00000429895 CITED4Q96RK1 184 aa15.11■□□□□ 0.01
PTPRF-206ENST00000429895 LDAHQ9H6V9 325 aa15.11■□□□□ 0.01
PTPRF-206ENST00000429895 MAN2B2Q9Y2E5 1009 aa15.11■□□□□ 0.01
PTPRF-206ENST00000429895 DAPL1A0PJW8 107 aa15.11■□□□□ 0.01
PTPRF-206ENST00000429895 SCELO95171 688 aa15.11■□□□□ 0.01
PTPRF-206ENST00000429895 TIGD5Q53EQ6 642 aa15.11■□□□□ 0.01
PTPRF-206ENST00000429895 KIAA1161Q6NSJ0 714 aa15.11■□□□□ 0.01
PTPRF-206ENST00000429895 GDPD4Q6W3E5 623 aa15.11■□□□□ 0.01
PTPRF-206ENST00000429895 REM2Q8IYK8 340 aaPredicted RBP15.11■□□□□ 0.01
PTPRF-206ENST00000429895 PRICKLE1Q96MT3 831 aaPredicted RBP15.11■□□□□ 0.01
PTPRF-206ENST00000429895 ZFP3Q96NJ6 502 aa15.11■□□□□ 0.01
PTPRF-206ENST00000429895 LENG8Q96PV6 779 aaPredicted RBP15.11■□□□□ 0.01
PTPRF-206ENST00000429895 PRAMEF12O95522 483 aa15.11■□□□□ 0.01
PTPRF-206ENST00000429895 LINGO3P0C6S8 592 aa15.11■□□□□ 0.01
PTPRF-206ENST00000429895 IDH3AP50213 366 aa15.11■□□□□ 0.01
PTPRF-206ENST00000429895 CAPZA1P52907 286 aa15.11■□□□□ 0.01
PTPRF-206ENST00000429895 NFKB2Q00653 900 aa15.11■□□□□ 0.01
PTPRF-206ENST00000429895 CCDC36Q8IYA8 594 aa15.11■□□□□ 0.01
PTPRF-206ENST00000429895 PI15O43692 258 aa15.1■□□□□ 0.01
PTPRF-206ENST00000429895 CCNKO75909 580 aa15.1■□□□□ 0.01
PTPRF-206ENST00000429895 SNX4O95219 450 aa15.1■□□□□ 0.01
PTPRF-206ENST00000429895 HSD11B1P28845 292 aa15.1■□□□□ 0.01
PTPRF-206ENST00000429895 MPIP34949 423 aa15.1■□□□□ 0.01
PTPRF-206ENST00000429895 EIF1AXP47813 144 aaKnown RBP15.1■□□□□ 0.01
PTPRF-206ENST00000429895 ADAM8P78325 824 aa15.1■□□□□ 0.01
PTPRF-206ENST00000429895 SLBPQ14493 270 aaKnown RBP eCLIP15.1■□□□□ 0.01
PTPRF-206ENST00000429895 RAB43Q86YS6 212 aa15.1■□□□□ 0.01
PTPRF-206ENST00000429895 DNAJA4Q8WW22 397 aaPredicted RBP15.1■□□□□ 0.01
PTPRF-206ENST00000429895 NSMCE3Q96MG7 304 aa15.1■□□□□ 0.01
PTPRF-206ENST00000429895 HMGXB4Q9UGU5 601 aa15.1■□□□□ 0.01
PTPRF-206ENST00000429895 RBMX2Q9Y388 322 aaKnown RBP15.1■□□□□ 0.01
PTPRF-206ENST00000429895 REXO2Q9Y3B8 237 aaKnown RBP15.1■□□□□ 0.01
PTPRF-206ENST00000429895 NR2E1Q9Y466 385 aa15.1■□□□□ 0.01
PTPRF-206ENST00000429895 PCDHGB5Q9Y5G0 923 aa15.1■□□□□ 0.01
PTPRF-206ENST00000429895 TEX46H3BTG2 121 aa15.1■□□□□ 0.01
PTPRF-206ENST00000429895 MID1O15344 667 aa15.1■□□□□ 0.01
PTPRF-206ENST00000429895 MPZL2O60487 215 aa15.1■□□□□ 0.01
PTPRF-206ENST00000429895 SEMA3DO95025 777 aa15.1■□□□□ 0.01
PTPRF-206ENST00000429895 LCA5LO95447 670 aa15.1■□□□□ 0.01
PTPRF-206ENST00000429895 PRPS2P11908 318 aa15.1■□□□□ 0.01
PTPRF-206ENST00000429895 AP3S2P59780 193 aa15.1■□□□□ 0.01
PTPRF-206ENST00000429895 SLC10A7Q0GE19 358 aa15.1■□□□□ 0.01
PTPRF-206ENST00000429895 SCARB2Q14108 478 aa15.1■□□□□ 0.01
PTPRF-206ENST00000429895 DNAJB7Q7Z6W7 309 aaPredicted RBP15.1■□□□□ 0.01
PTPRF-206ENST00000429895 YTHDF3Q7Z739 585 aaKnown RBP15.1■□□□□ 0.01
PTPRF-206ENST00000429895 CLNKQ7Z7G1 428 aa15.1■□□□□ 0.01
PTPRF-206ENST00000429895 RASGEF1CQ8N431 466 aa15.1■□□□□ 0.01
PTPRF-206ENST00000429895 SERINC1Q9NRX5 453 aa15.1■□□□□ 0.01
PTPRF-206ENST00000429895 TTC34A8MYJ7 566 aa15.1■□□□□ 0.01
PTPRF-206ENST00000429895 NOL4O94818 638 aa15.1■□□□□ 0.01
PTPRF-206ENST00000429895 HOXB6P17509 224 aaKnown RBP15.1■□□□□ 0.01
PTPRF-206ENST00000429895 PRKD1Q15139 912 aaPredicted RBP15.1■□□□□ 0.01
PTPRF-206ENST00000429895 MBLAC2Q68D91 279 aa15.1■□□□□ 0.01
PTPRF-206ENST00000429895 SYVN1Q86TM6 617 aa15.1■□□□□ 0.01
PTPRF-206ENST00000429895 FSTL5Q8N475 847 aaPredicted RBP15.1■□□□□ 0.01
PTPRF-206ENST00000429895 PLA2G15Q8NCC3 412 aa15.1■□□□□ 0.01
PTPRF-206ENST00000429895 PROKR2Q8NFJ6 384 aa15.1■□□□□ 0.01
PTPRF-206ENST00000429895 SEC61A2Q9H9S3 476 aa15.1■□□□□ 0.01
PTPRF-206ENST00000429895 RUVBL1Q9Y265 456 aaKnown RBP15.1■□□□□ 0.01
PTPRF-206ENST00000429895 A0A1W2PRB8 838 aa15.1■□□□□ 0.01
PTPRF-206ENST00000429895 PITPNM1O00562 1244 aa15.1■□□□□ 0.01
PTPRF-206ENST00000429895 TBX1O43435 398 aa15.1■□□□□ 0.01
PTPRF-206ENST00000429895 AIREO43918 545 aa15.1■□□□□ 0.01
PTPRF-206ENST00000429895 ADNP2Q6IQ32 1131 aa15.1■□□□□ 0.01
PTPRF-206ENST00000429895 OGFOD2Q6N063 350 aa15.1■□□□□ 0.01
PTPRF-206ENST00000429895 ADGRD1Q6QNK2 874 aa15.1■□□□□ 0.01
PTPRF-206ENST00000429895 LMX1AQ8TE12 382 aa15.1■□□□□ 0.01
Retrieved 100 of 20,778 RNA–protein pairs in 36.4 ms