RNA–Protein interactions for RNA: ENST00000411423.1

SF3A1-202, Transcript of splicing factor 3a subunit 1, humanhuman

TSL 4

Gene SF3A1, Length 548 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3A1-202ENST00000411423 TMEM126BQ8IUX1 230 aa18.41■□□□□ 0.54
SF3A1-202ENST00000411423 PPIL6Q8IXY8 311 aa18.41■□□□□ 0.54
SF3A1-202ENST00000411423 C19orf47Q8N9M1 422 aaKnown RBP18.41■□□□□ 0.54
SF3A1-202ENST00000411423 GRK7Q8WTQ7 553 aa18.41■□□□□ 0.54
SF3A1-202ENST00000411423 PANX3Q96QZ0 392 aa18.41■□□□□ 0.54
SF3A1-202ENST00000411423 TSSK1BQ9BXA7 367 aa18.41■□□□□ 0.54
SF3A1-202ENST00000411423 LATS2Q9NRM7 1088 aa18.41■□□□□ 0.54
SF3A1-202ENST00000411423 OR6C2Q9NZP2 312 aa18.41■□□□□ 0.54
SF3A1-202ENST00000411423 KLHL20Q9Y2M5 609 aa18.41■□□□□ 0.54
SF3A1-202ENST00000411423 MED16Q9Y2X0 877 aa18.41■□□□□ 0.54
SF3A1-202ENST00000411423 SNRNP200O75643 2136 aaKnown RBP18.41■□□□□ 0.54
SF3A1-202ENST00000411423 SPTBP11277 2137 aa18.4■□□□□ 0.54
SF3A1-202ENST00000411423 GOLGA6L10A0A0M3HER8 536 aa18.4■□□□□ 0.54
SF3A1-202ENST00000411423 F8W8V4 182 aa18.4■□□□□ 0.54
SF3A1-202ENST00000411423 DNALI1O14645 258 aaPredicted RBP18.4■□□□□ 0.54
SF3A1-202ENST00000411423 CPNE3O75131 537 aaKnown RBP18.4■□□□□ 0.54
SF3A1-202ENST00000411423 KATNA1O75449 491 aa18.4■□□□□ 0.54
SF3A1-202ENST00000411423 MSL3P1P0C860 447 aa18.4■□□□□ 0.54
SF3A1-202ENST00000411423 RORAP35398 523 aa18.4■□□□□ 0.54
SF3A1-202ENST00000411423 CTBP1Q13363 440 aa18.4■□□□□ 0.54
SF3A1-202ENST00000411423 ARMC3Q5W041 872 aa18.4■□□□□ 0.54
SF3A1-202ENST00000411423 ZNF470Q6ECI4 717 aa18.4■□□□□ 0.54
SF3A1-202ENST00000411423 BORAQ6PGQ7 559 aa18.4■□□□□ 0.54
SF3A1-202ENST00000411423 UNC5DQ6UXZ4 953 aa18.4■□□□□ 0.54
SF3A1-202ENST00000411423 ZNF517Q6ZMY9 492 aaPredicted RBP18.4■□□□□ 0.54
SF3A1-202ENST00000411423 SDCCAG8Q86SQ7 713 aaPredicted RBP18.4■□□□□ 0.54
SF3A1-202ENST00000411423 TAX1BP1Q86VP1 789 aa18.4■□□□□ 0.54
SF3A1-202ENST00000411423 DCUN1D3Q8IWE4 304 aa18.4■□□□□ 0.54
SF3A1-202ENST00000411423 GIMAP7Q8NHV1 300 aa18.4■□□□□ 0.54
SF3A1-202ENST00000411423 DENND1AQ8TEH3 1009 aa18.4■□□□□ 0.54
SF3A1-202ENST00000411423 SLCO2A1Q92959 643 aa18.4■□□□□ 0.54
SF3A1-202ENST00000411423 PWWP2AQ96N64 755 aa18.4■□□□□ 0.54
SF3A1-202ENST00000411423 TCF12Q99081 682 aa18.4■□□□□ 0.54
SF3A1-202ENST00000411423 ARHGAP9Q9BRR9 750 aa18.4■□□□□ 0.54
SF3A1-202ENST00000411423 EFHD1Q9BUP0 239 aa18.4■□□□□ 0.54
SF3A1-202ENST00000411423 PLAC1Q9HBJ0 212 aa18.4■□□□□ 0.54
SF3A1-202ENST00000411423 FBXO6Q9NRD1 293 aaPredicted RBP18.4■□□□□ 0.54
SF3A1-202ENST00000411423 SAMD15Q9P1V8 674 aa18.4■□□□□ 0.54
SF3A1-202ENST00000411423 PCYOX1Q9UHG3 505 aa18.4■□□□□ 0.54
SF3A1-202ENST00000411423 PCDHGA6Q9Y5G7 932 aa18.4■□□□□ 0.54
SF3A1-202ENST00000411423 A0A0J9YY10 115 aa18.39■□□□□ 0.53
SF3A1-202ENST00000411423 ISM1B1AKI9 464 aa18.39■□□□□ 0.53
SF3A1-202ENST00000411423 USP1O94782 785 aa18.39■□□□□ 0.53
SF3A1-202ENST00000411423 C1orf105O95561 183 aa18.39■□□□□ 0.53
SF3A1-202ENST00000411423 MT-ND3P03897 115 aa18.39■□□□□ 0.53
SF3A1-202ENST00000411423 CCNYL3P0C7X3 344 aa18.39■□□□□ 0.53
SF3A1-202ENST00000411423 SLC1A2P43004 574 aa18.39■□□□□ 0.53
SF3A1-202ENST00000411423 RAB28P51157 221 aa18.39■□□□□ 0.53
SF3A1-202ENST00000411423 ADARP55265 1226 aaKnown RBP18.39■□□□□ 0.53
SF3A1-202ENST00000411423 NFKB2Q00653 900 aa18.39■□□□□ 0.53
SF3A1-202ENST00000411423 ERV3-1Q14264 604 aa18.39■□□□□ 0.53
SF3A1-202ENST00000411423 TMED2Q15363 201 aa18.39■□□□□ 0.53
SF3A1-202ENST00000411423 PPP1R7Q15435 360 aa18.39■□□□□ 0.53
SF3A1-202ENST00000411423 DEFB109BQ30KR1 87 aa18.39■□□□□ 0.53
SF3A1-202ENST00000411423 ACSBG2Q5FVE4 666 aa18.39■□□□□ 0.53
SF3A1-202ENST00000411423 FAM69BQ5VUD6 431 aa18.39■□□□□ 0.53
SF3A1-202ENST00000411423 OTOAQ7RTW8 1153 aa18.39■□□□□ 0.53
SF3A1-202ENST00000411423 IGDCC3Q8IVU1 814 aa18.39■□□□□ 0.53
SF3A1-202ENST00000411423 KLHL7Q8IXQ5 586 aa18.39■□□□□ 0.53
SF3A1-202ENST00000411423 OR8K5Q8NH50 307 aa18.39■□□□□ 0.53
SF3A1-202ENST00000411423 WDR83Q9BRX9 315 aaKnown RBP18.39■□□□□ 0.53
SF3A1-202ENST00000411423 PCMTD2Q9NV79 361 aa18.39■□□□□ 0.53
SF3A1-202ENST00000411423 PCDHB3Q9Y5E6 796 aa18.39■□□□□ 0.53
SF3A1-202ENST00000411423 MAD1L1Q9Y6D9 718 aa18.39■□□□□ 0.53
SF3A1-202ENST00000411423 MAGEB16A2A368 324 aa18.38■□□□□ 0.53
SF3A1-202ENST00000411423 RASGRF2O14827 1237 aa18.38■□□□□ 0.53
SF3A1-202ENST00000411423 PRICKLE3O43900 615 aaPredicted RBP18.38■□□□□ 0.53
SF3A1-202ENST00000411423 ESR1P03372 595 aa18.38■□□□□ 0.53
SF3A1-202ENST00000411423 CAPN1P07384 714 aa18.38■□□□□ 0.53
SF3A1-202ENST00000411423 PKMP14618 531 aaKnown RBP18.38■□□□□ 0.53
SF3A1-202ENST00000411423 PAMP19021 973 aa18.38■□□□□ 0.53
SF3A1-202ENST00000411423 CD9P21926 228 aa18.38■□□□□ 0.53
SF3A1-202ENST00000411423 CLCN7P51798 805 aa18.38■□□□□ 0.53
SF3A1-202ENST00000411423 POLE2P56282 527 aa18.38■□□□□ 0.53
SF3A1-202ENST00000411423 MPP1Q00013 466 aa18.38■□□□□ 0.53
SF3A1-202ENST00000411423 DHX9Q08211 1270 aaKnown RBP18.38■□□□□ 0.53
SF3A1-202ENST00000411423 SLC5A12Q1EHB4 618 aa18.38■□□□□ 0.53
SF3A1-202ENST00000411423 CRTC2Q53ET0 693 aaPredicted RBP18.38■□□□□ 0.53
SF3A1-202ENST00000411423 RNF187Q5TA31 235 aaPredicted RBP18.38■□□□□ 0.53
SF3A1-202ENST00000411423 CNSTQ6PJW8 725 aa18.38■□□□□ 0.53
SF3A1-202ENST00000411423 DSELQ8IZU8 1212 aa18.38■□□□□ 0.53
SF3A1-202ENST00000411423 C17orf53Q8N3J3 647 aaPredicted RBP18.38■□□□□ 0.53
SF3A1-202ENST00000411423 DNAJC22Q8N4W6 341 aa18.38■□□□□ 0.53
SF3A1-202ENST00000411423 OR2L8Q8NGY9 312 aa18.38■□□□□ 0.53
SF3A1-202ENST00000411423 NAPGQ99747 312 aaPredicted RBP18.38■□□□□ 0.53
SF3A1-202ENST00000411423 SPRTNQ9H040 489 aaPredicted RBP18.38■□□□□ 0.53
SF3A1-202ENST00000411423 CHST8Q9H2A9 424 aa18.38■□□□□ 0.53
SF3A1-202ENST00000411423 ACTL8Q9H568 366 aa18.38■□□□□ 0.53
SF3A1-202ENST00000411423 STARD5Q9NSY2 213 aa18.38■□□□□ 0.53
SF3A1-202ENST00000411423 ASIC3Q9UHC3 531 aa18.38■□□□□ 0.53
SF3A1-202ENST00000411423 MEN1O00255 615 aa18.37■□□□□ 0.53
SF3A1-202ENST00000411423 CREG1O75629 220 aa18.37■□□□□ 0.53
SF3A1-202ENST00000411423 MATN4O95460 622 aa18.37■□□□□ 0.53
SF3A1-202ENST00000411423 PLA2G2AP14555 144 aa18.37■□□□□ 0.53
SF3A1-202ENST00000411423 MAGP20916 626 aa18.37■□□□□ 0.53
SF3A1-202ENST00000411423 PSMB5P28074 263 aa18.37■□□□□ 0.53
SF3A1-202ENST00000411423 NFATC3Q12968 1075 aa18.37■□□□□ 0.53
SF3A1-202ENST00000411423 IL10RAQ13651 578 aa18.37■□□□□ 0.53
SF3A1-202ENST00000411423 KIR2DS3Q14952 304 aa18.37■□□□□ 0.53
SF3A1-202ENST00000411423 PTCHD3Q3KNS1 767 aa18.37■□□□□ 0.53
Retrieved 100 of 20,778 RNA–protein pairs in 49.4 ms