RNA–Protein interactions for RNA: ENST00000409441.5

LIMS1-204, Transcript of LIM zinc finger domain containing 1, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene LIMS1, Length 1,627 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS1-204ENST00000409441 HERC3Q15034 1050 aa13.11□□□□□ -0.31
LIMS1-204ENST00000409441 ZRSR2Q15696 482 aaKnown RBP13.11□□□□□ -0.31
LIMS1-204ENST00000409441 ACSBG2Q5FVE4 666 aa13.11□□□□□ -0.31
LIMS1-204ENST00000409441 SH2D4BQ5SQS7 431 aa13.11□□□□□ -0.31
LIMS1-204ENST00000409441 C11orf96Q7Z7L8 435 aa13.11□□□□□ -0.31
LIMS1-204ENST00000409441 AMZ2Q86W34 360 aa13.11□□□□□ -0.31
LIMS1-204ENST00000409441 SPATA6LQ8N4H0 392 aa13.11□□□□□ -0.31
LIMS1-204ENST00000409441 FBXO27Q8NI29 283 aa13.11□□□□□ -0.31
LIMS1-204ENST00000409441 STMN2Q93045 179 aa13.11□□□□□ -0.31
LIMS1-204ENST00000409441 L3HYPDHQ96EM0 354 aa13.11□□□□□ -0.31
LIMS1-204ENST00000409441 MAELQ96JY0 434 aaKnown RBP13.11□□□□□ -0.31
LIMS1-204ENST00000409441 OR2M4Q96R27 311 aa13.11□□□□□ -0.31
LIMS1-204ENST00000409441 OR52B2Q96RD2 323 aa13.11□□□□□ -0.31
LIMS1-204ENST00000409441 RTKNQ9BST9 563 aa13.11□□□□□ -0.31
LIMS1-204ENST00000409441 THTPAQ9BU02 230 aa13.11□□□□□ -0.31
LIMS1-204ENST00000409441 TRNAU1APQ9NX07 287 aaKnown RBP13.11□□□□□ -0.31
LIMS1-204ENST00000409441 NCDNQ9UBB6 729 aa13.11□□□□□ -0.31
LIMS1-204ENST00000409441 STOML1Q9UBI4 398 aa13.11□□□□□ -0.31
LIMS1-204ENST00000409441 VPS13AQ96RL7 3174 aa13.1□□□□□ -0.31
LIMS1-204ENST00000409441 E9PBE3 544 aa13.1□□□□□ -0.31
LIMS1-204ENST00000409441 ZBTB14O43829 449 aa13.1□□□□□ -0.31
LIMS1-204ENST00000409441 DFNA5O60443 496 aa13.1□□□□□ -0.31
LIMS1-204ENST00000409441 KLHL41O60662 606 aa13.1□□□□□ -0.31
LIMS1-204ENST00000409441 SMIM24O75264 130 aa13.1□□□□□ -0.31
LIMS1-204ENST00000409441 NIPSNAP2O75323 286 aa13.1□□□□□ -0.31
LIMS1-204ENST00000409441 FTH1P02794 183 aa13.1□□□□□ -0.31
LIMS1-204ENST00000409441 THRAP10827 490 aa13.1□□□□□ -0.31
LIMS1-204ENST00000409441 ACP5P13686 325 aa13.1□□□□□ -0.31
LIMS1-204ENST00000409441 ENGP17813 658 aa13.1□□□□□ -0.31
LIMS1-204ENST00000409441 IMPDH1P20839 514 aa13.1□□□□□ -0.31
LIMS1-204ENST00000409441 HNRNPKP61978 463 aaKnown RBP eCLIP13.1□□□□□ -0.31
LIMS1-204ENST00000409441 C1orf61Q13536 156 aa13.1□□□□□ -0.31
LIMS1-204ENST00000409441 TCEA2Q15560 299 aa13.1□□□□□ -0.31
LIMS1-204ENST00000409441 ZNF423Q2M1K9 1284 aa13.1□□□□□ -0.31
LIMS1-204ENST00000409441 LSM12Q3MHD2 195 aaKnown RBP13.1□□□□□ -0.31
LIMS1-204ENST00000409441 PLA2G4EQ3MJ16 856 aa13.1□□□□□ -0.31
LIMS1-204ENST00000409441 PRRT3Q5FWE3 981 aa13.1□□□□□ -0.31
LIMS1-204ENST00000409441 SUPV3L1Q8IYB8 786 aaKnown RBP eCLIP13.1□□□□□ -0.31
LIMS1-204ENST00000409441 OXR1Q8N573 874 aa13.1□□□□□ -0.31
LIMS1-204ENST00000409441 CCL4L1Q8NHW4 92 aa13.1□□□□□ -0.31
LIMS1-204ENST00000409441 RHEBL1Q8TAI7 183 aa13.1□□□□□ -0.31
LIMS1-204ENST00000409441 ANKRD49Q8WVL7 239 aa13.1□□□□□ -0.31
LIMS1-204ENST00000409441 FAM136AQ96C01 138 aa13.1□□□□□ -0.31
LIMS1-204ENST00000409441 LINC00615Q96LM1 132 aaPredicted RBP13.1□□□□□ -0.31
LIMS1-204ENST00000409441 GTPBP2Q9BX10 602 aaKnown RBP13.1□□□□□ -0.31
LIMS1-204ENST00000409441 ZNF385DQ9H6B1 395 aa13.1□□□□□ -0.31
LIMS1-204ENST00000409441 GAREM1Q9H706 876 aa13.1□□□□□ -0.31
LIMS1-204ENST00000409441 IL21RQ9HBE5 538 aa13.1□□□□□ -0.31
LIMS1-204ENST00000409441 SYTL2Q9HCH5 934 aa13.1□□□□□ -0.31
LIMS1-204ENST00000409441 APOBEC3BQ9UH17 382 aaKnown RBP13.1□□□□□ -0.31
LIMS1-204ENST00000409441 RAPGEFL1Q9UHV5 662 aa13.1□□□□□ -0.31
LIMS1-204ENST00000409441 COMMD10Q9Y6G5 202 aa13.1□□□□□ -0.31
LIMS1-204ENST00000409441 USP34Q70CQ2 3546 aa13.1□□□□□ -0.31
LIMS1-204ENST00000409441 C17orf113A0A1B0GUU1 675 aa13.1□□□□□ -0.31
LIMS1-204ENST00000409441 CCDC189A1A4V9 331 aa13.1□□□□□ -0.31
LIMS1-204ENST00000409441 MGAT4DA6NG13 374 aa13.1□□□□□ -0.31
LIMS1-204ENST00000409441 H3BM21 787 aa13.1□□□□□ -0.31
LIMS1-204ENST00000409441 CCNT2O60583 730 aaKnown RBP13.1□□□□□ -0.31
LIMS1-204ENST00000409441 CD1DP15813 335 aa13.1□□□□□ -0.31
LIMS1-204ENST00000409441 CD9P21926 228 aa13.1□□□□□ -0.31
LIMS1-204ENST00000409441 PBLDP30039 288 aaPredicted RBP13.1□□□□□ -0.31
LIMS1-204ENST00000409441 CCR10P46092 362 aa13.1□□□□□ -0.31
LIMS1-204ENST00000409441 CTBSQ01459 385 aa13.1□□□□□ -0.31
LIMS1-204ENST00000409441 NHLH1Q02575 133 aa13.1□□□□□ -0.31
LIMS1-204ENST00000409441 BTKQ06187 659 aa13.1□□□□□ -0.31
LIMS1-204ENST00000409441 BNIP3Q12983 259 aa13.1□□□□□ -0.31
LIMS1-204ENST00000409441 LRP8Q14114 963 aa13.1□□□□□ -0.31
LIMS1-204ENST00000409441 SF3A2Q15428 464 aaKnown RBP13.1□□□□□ -0.31
LIMS1-204ENST00000409441 SHBQ15464 509 aa13.1□□□□□ -0.31
LIMS1-204ENST00000409441 TMEM207Q6UWW9 146 aa13.1□□□□□ -0.31
LIMS1-204ENST00000409441 FRMD7Q6ZUT3 714 aa13.1□□□□□ -0.31
LIMS1-204ENST00000409441 ISCA2Q86U28 154 aa13.1□□□□□ -0.31
LIMS1-204ENST00000409441 CFAP206Q8IYR0 622 aa13.1□□□□□ -0.31
LIMS1-204ENST00000409441 OR2I1PQ8NGU4 316 aa13.1□□□□□ -0.31
LIMS1-204ENST00000409441 OR2L2Q8NH16 312 aa13.1□□□□□ -0.31
LIMS1-204ENST00000409441 AGR3Q8TD06 166 aa13.1□□□□□ -0.31
LIMS1-204ENST00000409441 GPBAR1Q8TDU6 330 aa13.1□□□□□ -0.31
LIMS1-204ENST00000409441 ACTRT2Q8TDY3 377 aa13.1□□□□□ -0.31
LIMS1-204ENST00000409441 PANX3Q96QZ0 392 aa13.1□□□□□ -0.31
LIMS1-204ENST00000409441 PHOX2BQ99453 314 aa13.1□□□□□ -0.31
LIMS1-204ENST00000409441 TIMM29Q9BSF4 260 aa13.1□□□□□ -0.31
LIMS1-204ENST00000409441 NUF2Q9BZD4 464 aa13.1□□□□□ -0.31
LIMS1-204ENST00000409441 TFB2MQ9H5Q4 396 aaKnown RBP13.1□□□□□ -0.31
LIMS1-204ENST00000409441 SEMA4GQ9NTN9 838 aa13.1□□□□□ -0.31
LIMS1-204ENST00000409441 GALPQ9UBC7 116 aa13.1□□□□□ -0.31
LIMS1-204ENST00000409441 SPASTQ9UBP0 616 aa13.1□□□□□ -0.31
LIMS1-204ENST00000409441 GULP1Q9UBP9 304 aa13.1□□□□□ -0.31
LIMS1-204ENST00000409441 MCM8Q9UJA3 840 aa13.1□□□□□ -0.31
LIMS1-204ENST00000409441 MED16Q9Y2X0 877 aa13.1□□□□□ -0.31
LIMS1-204ENST00000409441 ST14Q9Y5Y6 855 aa13.1□□□□□ -0.31
LIMS1-204ENST00000409441 A0A088AWK7 358 aa13.09□□□□□ -0.31
LIMS1-204ENST00000409441 A0A1B0GTQ1 180 aa13.09□□□□□ -0.31
LIMS1-204ENST00000409441 E5RI56 91 aa13.09□□□□□ -0.31
LIMS1-204ENST00000409441 KCNJ13O60928 360 aa13.09□□□□□ -0.31
LIMS1-204ENST00000409441 SDC3O75056 442 aa13.09□□□□□ -0.31
LIMS1-204ENST00000409441 LRP3O75074 770 aa13.09□□□□□ -0.31
LIMS1-204ENST00000409441 PIAS2O75928 621 aa13.09□□□□□ -0.31
LIMS1-204ENST00000409441 GSTM1P09488 218 aa13.09□□□□□ -0.31
LIMS1-204ENST00000409441 ZNF37AP17032 561 aaPredicted RBP13.09□□□□□ -0.31
LIMS1-204ENST00000409441 VCLP18206 1134 aa13.09□□□□□ -0.31
Retrieved 100 of 20,778 RNA–protein pairs in 23.3 ms