RNA–Protein interactions for RNA: ENST00000403076.5

SDC1-203, Transcript of syndecan 1, humanhuman

TSL 1 (best) BASIC

Gene SDC1, Length 1,523 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC1-203ENST00000403076 C6orf132Q5T0Z8 1188 aa17.57■□□□□ 0.4
SDC1-203ENST00000403076 SULT1C3Q6IMI6 304 aa17.57■□□□□ 0.4
SDC1-203ENST00000403076 OGFOD3Q6PK18 319 aa17.57■□□□□ 0.4
SDC1-203ENST00000403076 C10orf107Q8IVU9 208 aa17.57■□□□□ 0.4
SDC1-203ENST00000403076 AVL9Q8NBF6 648 aa17.57■□□□□ 0.4
SDC1-203ENST00000403076 ATL1Q8WXF7 558 aa17.57■□□□□ 0.4
SDC1-203ENST00000403076 MECRQ9BV79 373 aa17.57■□□□□ 0.4
SDC1-203ENST00000403076 DUSP23Q9BVJ7 150 aa17.57■□□□□ 0.4
SDC1-203ENST00000403076 POT1Q9NUX5 634 aa17.57■□□□□ 0.4
SDC1-203ENST00000403076 NLGN3Q9NZ94 848 aa17.57■□□□□ 0.4
SDC1-203ENST00000403076 HCN4Q9Y3Q4 1203 aa17.57■□□□□ 0.4
SDC1-203ENST00000403076 RALGAPA1Q6GYQ0 2036 aa17.56■□□□□ 0.4
SDC1-203ENST00000403076 PCDH15Q96QU1 1955 aa17.56■□□□□ 0.4
SDC1-203ENST00000403076 LNP1A1A4G5 178 aa17.56■□□□□ 0.4
SDC1-203ENST00000403076 MYO1CO00159 1063 aa17.56■□□□□ 0.4
SDC1-203ENST00000403076 POLR3GO15318 223 aaPredicted RBP17.56■□□□□ 0.4
SDC1-203ENST00000403076 BIRC5O15392 142 aa17.56■□□□□ 0.4
SDC1-203ENST00000403076 NOBOXO60393 691 aa17.56■□□□□ 0.4
SDC1-203ENST00000403076 IPO13O94829 963 aaKnown RBP17.56■□□□□ 0.4
SDC1-203ENST00000403076 DHRS4L1P0CG22 281 aa17.56■□□□□ 0.4
SDC1-203ENST00000403076 ALDH18A1P54886 795 aaKnown RBP17.56■□□□□ 0.4
SDC1-203ENST00000403076 HHEXQ03014 270 aa17.56■□□□□ 0.4
SDC1-203ENST00000403076 TSTA3Q13630 321 aaPredicted RBP17.56■□□□□ 0.4
SDC1-203ENST00000403076 SUZ12Q15022 739 aaKnown RBP17.56■□□□□ 0.4
SDC1-203ENST00000403076 PLCL1Q15111 1095 aa17.56■□□□□ 0.4
SDC1-203ENST00000403076 FBXO48Q5FWF7 155 aa17.56■□□□□ 0.4
SDC1-203ENST00000403076 SYTL1Q8IYJ3 562 aa17.56■□□□□ 0.4
SDC1-203ENST00000403076 TCAIMQ8N3R3 496 aa17.56■□□□□ 0.4
SDC1-203ENST00000403076 ARL14Q8N4G2 192 aa17.56■□□□□ 0.4
SDC1-203ENST00000403076 PDPRQ8NCN5 879 aa17.56■□□□□ 0.4
SDC1-203ENST00000403076 OR52E1Q8NGJ3 308 aa17.56■□□□□ 0.4
SDC1-203ENST00000403076 RHBDF1Q96CC6 855 aa17.56■□□□□ 0.4
SDC1-203ENST00000403076 FBXL8Q96CD0 374 aa17.56■□□□□ 0.4
SDC1-203ENST00000403076 SLC40A1Q9NP59 571 aa17.56■□□□□ 0.4
SDC1-203ENST00000403076 SEMA4GQ9NTN9 838 aa17.56■□□□□ 0.4
SDC1-203ENST00000403076 OXSMQ9NWU1 459 aa17.56■□□□□ 0.4
SDC1-203ENST00000403076 PCDHGA12O60330 932 aa17.55■□□□□ 0.4
SDC1-203ENST00000403076 TRIM13O60858 407 aa17.55■□□□□ 0.4
SDC1-203ENST00000403076 SLC16A8O95907 504 aa17.55■□□□□ 0.4
SDC1-203ENST00000403076 HNMTP50135 292 aa17.55■□□□□ 0.4
SDC1-203ENST00000403076 UBE2IP63279 158 aaKnown RBP17.55■□□□□ 0.4
SDC1-203ENST00000403076 C14orf28Q4W4Y0 310 aa17.55■□□□□ 0.4
SDC1-203ENST00000403076 AGTRAPQ6RW13 159 aa17.55■□□□□ 0.4
SDC1-203ENST00000403076 KANSL1Q7Z3B3 1105 aa17.55■□□□□ 0.4
SDC1-203ENST00000403076 RBM12BQ8IXT5 1001 aaKnown RBP17.55■□□□□ 0.4
SDC1-203ENST00000403076 CCNYL1Q8N7R7 359 aa17.55■□□□□ 0.4
SDC1-203ENST00000403076 KYQ8NBH2 561 aa17.55■□□□□ 0.4
SDC1-203ENST00000403076 ZFPM2Q8WW38 1151 aa17.55■□□□□ 0.4
SDC1-203ENST00000403076 LCN9Q8WX39 176 aa17.55■□□□□ 0.4
SDC1-203ENST00000403076 IL17FQ96PD4 163 aa17.55■□□□□ 0.4
SDC1-203ENST00000403076 ATG10Q9H0Y0 220 aa17.55■□□□□ 0.4
SDC1-203ENST00000403076 KIR3DX1Q9H7L2 352 aa17.55■□□□□ 0.4
SDC1-203ENST00000403076 STOX2Q9P2F5 926 aaPredicted RBP17.55■□□□□ 0.4
SDC1-203ENST00000403076 ZNF839A8K0R7 811 aa17.54■□□□□ 0.4
SDC1-203ENST00000403076 KLK8O60259 260 aa17.54■□□□□ 0.4
SDC1-203ENST00000403076 HSD17B2P37059 387 aa17.54■□□□□ 0.4
SDC1-203ENST00000403076 AGTR2P50052 363 aa17.54■□□□□ 0.4
SDC1-203ENST00000403076 PRKAA2P54646 552 aa17.54■□□□□ 0.4
SDC1-203ENST00000403076 GRB7Q14451 532 aa17.54■□□□□ 0.4
SDC1-203ENST00000403076 SETDB1Q15047 1291 aa17.54■□□□□ 0.4
SDC1-203ENST00000403076 C18orf21Q32NC0 220 aaPredicted RBP17.54■□□□□ 0.4
SDC1-203ENST00000403076 LIPMQ5VYY2 423 aa17.54■□□□□ 0.4
SDC1-203ENST00000403076 ZCCHC8Q6NZY4 707 aaKnown RBP17.54■□□□□ 0.4
SDC1-203ENST00000403076 EID2Q8N6I1 236 aa17.54■□□□□ 0.4
SDC1-203ENST00000403076 ARL10Q8N8L6 244 aa17.54■□□□□ 0.4
SDC1-203ENST00000403076 GPR156Q8NFN8 814 aa17.54■□□□□ 0.4
SDC1-203ENST00000403076 OR4C6Q8NH72 309 aa17.54■□□□□ 0.4
SDC1-203ENST00000403076 PPP4R1Q8TF05 950 aa17.54■□□□□ 0.4
SDC1-203ENST00000403076 JPH3Q8WXH2 748 aaPredicted RBP17.54■□□□□ 0.4
SDC1-203ENST00000403076 ESAMQ96AP7 390 aa17.54■□□□□ 0.4
SDC1-203ENST00000403076 SH3KBP1Q96B97 665 aa17.54■□□□□ 0.4
SDC1-203ENST00000403076 RAB11FIP5Q9BXF6 653 aa17.54■□□□□ 0.4
SDC1-203ENST00000403076 XKR8Q9H6D3 395 aa17.54■□□□□ 0.4
SDC1-203ENST00000403076 ABCF3Q9NUQ8 709 aa17.54■□□□□ 0.4
SDC1-203ENST00000403076 SPATA7Q9P0W8 599 aa17.54■□□□□ 0.4
SDC1-203ENST00000403076 PTBP2Q9UKA9 531 aaKnown RBP17.54■□□□□ 0.4
SDC1-203ENST00000403076 TNPO3Q9Y5L0 923 aaKnown RBP17.54■□□□□ 0.4
SDC1-203ENST00000403076 STX16-NPEPL1H3BU86 382 aa17.53■□□□□ 0.4
SDC1-203ENST00000403076 TRIM38O00635 465 aa17.53■□□□□ 0.4
SDC1-203ENST00000403076 STX16O14662 325 aa17.53■□□□□ 0.4
SDC1-203ENST00000403076 TAPBPO15533 448 aa17.53■□□□□ 0.4
SDC1-203ENST00000403076 CCNT2O60583 730 aaKnown RBP17.53■□□□□ 0.4
SDC1-203ENST00000403076 LRP3O75074 770 aa17.53■□□□□ 0.4
SDC1-203ENST00000403076 SIX3O95343 332 aaPredicted RBP17.53■□□□□ 0.4
SDC1-203ENST00000403076 ZNF883P0CG24 379 aa17.53■□□□□ 0.4
SDC1-203ENST00000403076 GIMD1P0DJR0 217 aa17.53■□□□□ 0.4
SDC1-203ENST00000403076 IMPDH1P20839 514 aa17.53■□□□□ 0.4
SDC1-203ENST00000403076 IMPA1P29218 277 aa17.53■□□□□ 0.4
SDC1-203ENST00000403076 EEF1DP29692 281 aaKnown RBP17.53■□□□□ 0.4
SDC1-203ENST00000403076 HSPA7P48741 367 aa17.53■□□□□ 0.4
SDC1-203ENST00000403076 PPM1FP49593 454 aaPredicted RBP17.53■□□□□ 0.4
SDC1-203ENST00000403076 PNLIPRP1P54315 467 aa17.53■□□□□ 0.4
SDC1-203ENST00000403076 NFKB2Q00653 900 aa17.53■□□□□ 0.4
SDC1-203ENST00000403076 NAE1Q13564 534 aa17.53■□□□□ 0.4
SDC1-203ENST00000403076 GPR18Q14330 331 aa17.53■□□□□ 0.4
SDC1-203ENST00000403076 CHI3L2Q15782 390 aa17.53■□□□□ 0.4
SDC1-203ENST00000403076 CSRP2Q16527 193 aa17.53■□□□□ 0.4
SDC1-203ENST00000403076 CFAP157Q5JU67 520 aa17.53■□□□□ 0.4
SDC1-203ENST00000403076 TMEM26Q6ZUK4 368 aa17.53■□□□□ 0.4
SDC1-203ENST00000403076 TRIM42Q8IWZ5 723 aa17.53■□□□□ 0.4
Retrieved 100 of 20,778 RNA–protein pairs in 42.1 ms