RNA–Protein interactions for RNA: ENST00000399489.5

HMGB1-204, Transcript of high mobility group box 1, humanhuman

TSL 1 (best) BASIC

Gene HMGB1, Length 1,727 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-204ENST00000399489 BBOF1Q8ND07 529 aa4□□□□□ -1.77
HMGB1-204ENST00000399489 OR2T3Q8NH03 318 aa4□□□□□ -1.77
HMGB1-204ENST00000399489 SCARB1Q8WTV0 552 aa4□□□□□ -1.77
HMGB1-204ENST00000399489 FIG4Q92562 907 aa4□□□□□ -1.77
HMGB1-204ENST00000399489 C16orf58Q96GQ5 468 aa4□□□□□ -1.77
HMGB1-204ENST00000399489 SLC41A2Q96JW4 573 aa4□□□□□ -1.77
HMGB1-204ENST00000399489 QRFPRQ96P65 431 aa4□□□□□ -1.77
HMGB1-204ENST00000399489 OSBPL9Q96SU4 736 aa4□□□□□ -1.77
HMGB1-204ENST00000399489 OLFM1Q99784 485 aa4□□□□□ -1.77
HMGB1-204ENST00000399489 DDX50Q9BQ39 737 aaKnown RBP4□□□□□ -1.77
HMGB1-204ENST00000399489 TMEM47Q9BQJ4 181 aa4□□□□□ -1.77
HMGB1-204ENST00000399489 PIGQQ9BRB3 760 aa4□□□□□ -1.77
HMGB1-204ENST00000399489 LRRCC1Q9C099 1032 aa4□□□□□ -1.77
HMGB1-204ENST00000399489 LSG1Q9H089 658 aaKnown RBP4□□□□□ -1.77
HMGB1-204ENST00000399489 UBQLN3Q9H347 655 aa4□□□□□ -1.77
HMGB1-204ENST00000399489 FN3KQ9H479 309 aa4□□□□□ -1.77
HMGB1-204ENST00000399489 SFXN1Q9H9B4 322 aa4□□□□□ -1.77
HMGB1-204ENST00000399489 SLC28A3Q9HAS3 691 aa4□□□□□ -1.77
HMGB1-204ENST00000399489 FARSBQ9NSD9 589 aaKnown RBP4□□□□□ -1.77
HMGB1-204ENST00000399489 ABHD10Q9NUJ1 306 aa4□□□□□ -1.77
HMGB1-204ENST00000399489 RAB20Q9NX57 234 aa4□□□□□ -1.77
HMGB1-204ENST00000399489 ARL15Q9NXU5 204 aa4□□□□□ -1.77
HMGB1-204ENST00000399489 TAS2R14Q9NYV8 317 aa4□□□□□ -1.77
HMGB1-204ENST00000399489 GPR132Q9UNW8 380 aa4□□□□□ -1.77
HMGB1-204ENST00000399489 DHDHQ9UQ10 334 aa4□□□□□ -1.77
HMGB1-204ENST00000399489 EXOC6BQ9Y2D4 811 aa4□□□□□ -1.77
HMGB1-204ENST00000399489 CARD8Q9Y2G2 431 aa4□□□□□ -1.77
HMGB1-204ENST00000399489 DLGAP4Q9Y2H0 992 aa4□□□□□ -1.77
HMGB1-204ENST00000399489 UTP18Q9Y5J1 556 aaKnown RBP eCLIP4□□□□□ -1.77
HMGB1-204ENST00000399489 V9GYY5 206 aaPredicted RBP4□□□□□ -1.77
HMGB1-204ENST00000399489 URB2Q14146 1524 aaKnown RBP3.99□□□□□ -1.77
HMGB1-204ENST00000399489 ZNF716A6NP11 495 aa3.99□□□□□ -1.77
HMGB1-204ENST00000399489 MCIDASD6RGH6 385 aa3.99□□□□□ -1.77
HMGB1-204ENST00000399489 F5H697 171 aa3.99□□□□□ -1.77
HMGB1-204ENST00000399489 PSMD9O00233 223 aa3.99□□□□□ -1.77
HMGB1-204ENST00000399489 CLDN4O14493 209 aa3.99□□□□□ -1.77
HMGB1-204ENST00000399489 DNALI1O14645 258 aaPredicted RBP3.99□□□□□ -1.77
HMGB1-204ENST00000399489 ATP2A1O14983 1001 aa3.99□□□□□ -1.77
HMGB1-204ENST00000399489 JRKO75564 520 aa3.99□□□□□ -1.77
HMGB1-204ENST00000399489 CTAG2O75638 210 aa3.99□□□□□ -1.77
HMGB1-204ENST00000399489 CIB2O75838 187 aa3.99□□□□□ -1.77
HMGB1-204ENST00000399489 CNTN5O94779 1100 aa3.99□□□□□ -1.77
HMGB1-204ENST00000399489 CYP1A2P05177 515 aa3.99□□□□□ -1.77
HMGB1-204ENST00000399489 ZNF735P0CB33 412 aa3.99□□□□□ -1.77
HMGB1-204ENST00000399489 CALCBP10092 127 aa3.99□□□□□ -1.77
HMGB1-204ENST00000399489 DLATP10515 647 aaKnown RBP3.99□□□□□ -1.77
HMGB1-204ENST00000399489 HSPA8P11142 646 aaKnown RBP3.99□□□□□ -1.77
HMGB1-204ENST00000399489 G6PDP11413 515 aa3.99□□□□□ -1.77
HMGB1-204ENST00000399489 UGT1A6P19224 532 aa3.99□□□□□ -1.77
HMGB1-204ENST00000399489 ITGB8P26012 769 aa3.99□□□□□ -1.77
HMGB1-204ENST00000399489 DUSP1P28562 367 aa3.99□□□□□ -1.77
HMGB1-204ENST00000399489 PKLRP30613 574 aa3.99□□□□□ -1.77
HMGB1-204ENST00000399489 SLC6A6P31641 620 aa3.99□□□□□ -1.77
HMGB1-204ENST00000399489 EPS15P42566 896 aa3.99□□□□□ -1.77
HMGB1-204ENST00000399489 JAK3P52333 1124 aa3.99□□□□□ -1.77
HMGB1-204ENST00000399489 ADPRHP54922 357 aa3.99□□□□□ -1.77
HMGB1-204ENST00000399489 ACTR3P61158 418 aa3.99□□□□□ -1.77
HMGB1-204ENST00000399489 TXNL4AP83876 142 aaKnown RBP3.99□□□□□ -1.77
HMGB1-204ENST00000399489 SPOCK1Q08629 439 aa3.99□□□□□ -1.77
HMGB1-204ENST00000399489 DMWDQ09019 674 aa3.99□□□□□ -1.77
HMGB1-204ENST00000399489 HSPB3Q12988 150 aa3.99□□□□□ -1.77
HMGB1-204ENST00000399489 TRDNQ13061 729 aa3.99□□□□□ -1.77
HMGB1-204ENST00000399489 TNK1Q13470 666 aa3.99□□□□□ -1.77
HMGB1-204ENST00000399489 KRT33BQ14525 404 aa3.99□□□□□ -1.77
HMGB1-204ENST00000399489 SQLEQ14534 574 aa3.99□□□□□ -1.77
HMGB1-204ENST00000399489 LARS2Q15031 903 aaKnown RBP3.99□□□□□ -1.77
HMGB1-204ENST00000399489 PFKFB3Q16875 520 aaPredicted RBP3.99□□□□□ -1.77
HMGB1-204ENST00000399489 KRT24Q2M2I5 525 aa3.99□□□□□ -1.77
HMGB1-204ENST00000399489 USH1GQ495M9 461 aa3.99□□□□□ -1.77
HMGB1-204ENST00000399489 FAM98BQ52LJ0 330 aaKnown RBP3.99□□□□□ -1.77
HMGB1-204ENST00000399489 PLAC9Q5JTB6 97 aa3.99□□□□□ -1.77
HMGB1-204ENST00000399489 ARHGEF16Q5VV41 709 aa3.99□□□□□ -1.77
HMGB1-204ENST00000399489 DCAF12L2Q5VW00 463 aa3.99□□□□□ -1.77
HMGB1-204ENST00000399489 FAM198BQ6UWH4 519 aa3.99□□□□□ -1.77
HMGB1-204ENST00000399489 CCDC80Q76M96 950 aa3.99□□□□□ -1.77
HMGB1-204ENST00000399489 MDGA2Q7Z553 956 aa3.99□□□□□ -1.77
HMGB1-204ENST00000399489 TBC1D26Q86UD7 250 aa3.99□□□□□ -1.77
HMGB1-204ENST00000399489 ZDHHC21Q8IVQ6 265 aa3.99□□□□□ -1.77
HMGB1-204ENST00000399489 ZDHHC23Q8IYP9 409 aa3.99□□□□□ -1.77
HMGB1-204ENST00000399489 FAM184AQ8NB25 1140 aa3.99□□□□□ -1.77
HMGB1-204ENST00000399489 TRIM58Q8NG06 486 aa3.99□□□□□ -1.77
HMGB1-204ENST00000399489 OR10T2Q8NGX3 314 aa3.99□□□□□ -1.77
HMGB1-204ENST00000399489 TMEM170AQ8WVE7 144 aa3.99□□□□□ -1.77
HMGB1-204ENST00000399489 LPIN2Q92539 896 aa3.99□□□□□ -1.77
HMGB1-204ENST00000399489 GLG1Q92896 1179 aa3.99□□□□□ -1.77
HMGB1-204ENST00000399489 AZIN2Q96A70 460 aa3.99□□□□□ -1.77
HMGB1-204ENST00000399489 FAM136AQ96C01 138 aa3.99□□□□□ -1.77
HMGB1-204ENST00000399489 C11orf24Q96F05 449 aaPredicted RBP3.99□□□□□ -1.77
HMGB1-204ENST00000399489 SPATA33Q96N06 139 aa3.99□□□□□ -1.77
HMGB1-204ENST00000399489 MS4A10Q96PG2 267 aa3.99□□□□□ -1.77
HMGB1-204ENST00000399489 C1QTNF7Q9BXJ2 289 aa3.99□□□□□ -1.77
HMGB1-204ENST00000399489 KCNMB3Q9NPA1 279 aa3.99□□□□□ -1.77
HMGB1-204ENST00000399489 UBAP1Q9NZ09 502 aa3.99□□□□□ -1.77
HMGB1-204ENST00000399489 CLEC4AQ9UMR7 237 aa3.99□□□□□ -1.77
HMGB1-204ENST00000399489 MFHAS1Q9Y4C4 1052 aa3.99□□□□□ -1.77
HMGB1-204ENST00000399489 RNF123Q5XPI4 1314 aa3.99□□□□□ -1.77
HMGB1-204ENST00000399489 ZNF541Q9H0D2 1346 aa3.99□□□□□ -1.77
HMGB1-204ENST00000399489 NCAPD2Q15021 1401 aa3.99□□□□□ -1.77
HMGB1-204ENST00000399489 A0A0U1RQJ8 604 aa3.98□□□□□ -1.77
HMGB1-204ENST00000399489 SERTM2A0A1B0GWG4 89 aa3.98□□□□□ -1.77
Retrieved 100 of 20,778 RNA–protein pairs in 36 ms