RNA–Protein interactions for RNA: ENST00000398729.1

VCX3A-202, Transcript of variable charge X-linked 3A, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene VCX3A, Length 808 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VCX3A-202ENST00000398729 MRNIPQ6NTE8 343 aa12.96□□□□□ -0.33
VCX3A-202ENST00000398729 ZNF517Q6ZMY9 492 aaPredicted RBP12.96□□□□□ -0.33
VCX3A-202ENST00000398729 CDHR3Q6ZTQ4 885 aa12.96□□□□□ -0.33
VCX3A-202ENST00000398729 SYVN1Q86TM6 617 aa12.96□□□□□ -0.33
VCX3A-202ENST00000398729 VRK3Q8IV63 474 aa12.96□□□□□ -0.33
VCX3A-202ENST00000398729 DSELQ8IZU8 1212 aa12.96□□□□□ -0.33
VCX3A-202ENST00000398729 KRT222Q8N1A0 295 aa12.96□□□□□ -0.33
VCX3A-202ENST00000398729 RASGEF1CQ8N431 466 aa12.96□□□□□ -0.33
VCX3A-202ENST00000398729 C19orf47Q8N9M1 422 aaKnown RBP12.96□□□□□ -0.33
VCX3A-202ENST00000398729 SLC38A9Q8NBW4 561 aa12.96□□□□□ -0.33
VCX3A-202ENST00000398729 OR1L3Q8NH93 324 aa12.96□□□□□ -0.33
VCX3A-202ENST00000398729 LKAAEAR1Q8TD35 194 aa12.96□□□□□ -0.33
VCX3A-202ENST00000398729 MAGOHBQ96A72 148 aaKnown RBP12.96□□□□□ -0.33
VCX3A-202ENST00000398729 CLIP3Q96DZ5 547 aa12.96□□□□□ -0.33
VCX3A-202ENST00000398729 MFSD3Q96ES6 412 aa12.96□□□□□ -0.33
VCX3A-202ENST00000398729 TCTN2Q96GX1 697 aa12.96□□□□□ -0.33
VCX3A-202ENST00000398729 OR2A14Q96R47 310 aa12.96□□□□□ -0.33
VCX3A-202ENST00000398729 NAP1L3Q99457 506 aaPredicted RBP12.96□□□□□ -0.33
VCX3A-202ENST00000398729 ACTR5Q9H9F9 607 aaPredicted RBP12.96□□□□□ -0.33
VCX3A-202ENST00000398729 SPHK1Q9NYA1 384 aa12.96□□□□□ -0.33
VCX3A-202ENST00000398729 ANAPC2Q9UJX6 822 aa12.96□□□□□ -0.33
VCX3A-202ENST00000398729 PLAGL1Q9UM63 463 aa12.96□□□□□ -0.33
VCX3A-202ENST00000398729 SOX13Q9UN79 622 aa12.96□□□□□ -0.33
VCX3A-202ENST00000398729 CDYLQ9Y232 598 aa12.96□□□□□ -0.33
VCX3A-202ENST00000398729 FARSAQ9Y285 508 aaKnown RBP12.96□□□□□ -0.33
VCX3A-202ENST00000398729 CELSR2Q9HCU4 2923 aa12.96□□□□□ -0.33
VCX3A-202ENST00000398729 A0A0J9YY10 115 aa12.95□□□□□ -0.34
VCX3A-202ENST00000398729 TCRBV7S3A2A0A539 114 aa12.95□□□□□ -0.34
VCX3A-202ENST00000398729 ISM1B1AKI9 464 aa12.95□□□□□ -0.34
VCX3A-202ENST00000398729 E7EQ34 232 aa12.95□□□□□ -0.34
VCX3A-202ENST00000398729 PFDN6O15212 129 aa12.95□□□□□ -0.34
VCX3A-202ENST00000398729 SLCO2B1O94956 709 aa12.95□□□□□ -0.34
VCX3A-202ENST00000398729 VAPBO95292 243 aa12.95□□□□□ -0.34
VCX3A-202ENST00000398729 KRT14P02533 472 aa12.95□□□□□ -0.34
VCX3A-202ENST00000398729 HBQ1P09105 142 aa12.95□□□□□ -0.34
VCX3A-202ENST00000398729 TPBGLP0DKB5 382 aa12.95□□□□□ -0.34
VCX3A-202ENST00000398729 PAMP19021 973 aa12.95□□□□□ -0.34
VCX3A-202ENST00000398729 RPS3P23396 243 aaKnown RBP eCLIP12.95□□□□□ -0.34
VCX3A-202ENST00000398729 RAB28P51157 221 aa12.95□□□□□ -0.34
VCX3A-202ENST00000398729 TERF1P54274 439 aa12.95□□□□□ -0.34
VCX3A-202ENST00000398729 ITGA1P56199 1179 aa12.95□□□□□ -0.34
VCX3A-202ENST00000398729 KCNJ11Q14654 390 aa12.95□□□□□ -0.34
VCX3A-202ENST00000398729 KIR2DS3Q14952 304 aa12.95□□□□□ -0.34
VCX3A-202ENST00000398729 KCTD19Q17RG1 926 aaPredicted RBP12.95□□□□□ -0.34
VCX3A-202ENST00000398729 ZNF789Q5FWF6 425 aa12.95□□□□□ -0.34
VCX3A-202ENST00000398729 PLEKHS1Q5SXH7 462 aa12.95□□□□□ -0.34
VCX3A-202ENST00000398729 RNF187Q5TA31 235 aaPredicted RBP12.95□□□□□ -0.34
VCX3A-202ENST00000398729 IZUMO3Q5VZ72 239 aa12.95□□□□□ -0.34
VCX3A-202ENST00000398729 HIST2H2BCQ6DN03 193 aa12.95□□□□□ -0.34
VCX3A-202ENST00000398729 CES3Q6UWW8 571 aa12.95□□□□□ -0.34
VCX3A-202ENST00000398729 UNC5DQ6UXZ4 953 aa12.95□□□□□ -0.34
VCX3A-202ENST00000398729 OTOAQ7RTW8 1153 aa12.95□□□□□ -0.34
VCX3A-202ENST00000398729 SDCCAG8Q86SQ7 713 aaPredicted RBP12.95□□□□□ -0.34
VCX3A-202ENST00000398729 TRIM73Q86UV7 250 aa12.95□□□□□ -0.34
VCX3A-202ENST00000398729 DCUN1D3Q8IWE4 304 aa12.95□□□□□ -0.34
VCX3A-202ENST00000398729 GPR135Q8IZ08 494 aa12.95□□□□□ -0.34
VCX3A-202ENST00000398729 FAM26EQ8N5C1 309 aa12.95□□□□□ -0.34
VCX3A-202ENST00000398729 CFAP61Q8NHU2 1237 aa12.95□□□□□ -0.34
VCX3A-202ENST00000398729 ABHD17AQ96GS6 310 aa12.95□□□□□ -0.34
VCX3A-202ENST00000398729 MS4A14Q96JA4 679 aa12.95□□□□□ -0.34
VCX3A-202ENST00000398729 RUFY1Q96T51 708 aa12.95□□□□□ -0.34
VCX3A-202ENST00000398729 CHRNA10Q9GZZ6 450 aa12.95□□□□□ -0.34
VCX3A-202ENST00000398729 P2RY12Q9H244 342 aa12.95□□□□□ -0.34
VCX3A-202ENST00000398729 CHST8Q9H2A9 424 aa12.95□□□□□ -0.34
VCX3A-202ENST00000398729 CACNA1DQ01668 2161 aa12.94□□□□□ -0.34
VCX3A-202ENST00000398729 BLACEA4D250 179 aa12.94□□□□□ -0.34
VCX3A-202ENST00000398729 MKRN2OSH3BPM6 223 aa12.94□□□□□ -0.34
VCX3A-202ENST00000398729 PGRMC1O00264 195 aaKnown RBP12.94□□□□□ -0.34
VCX3A-202ENST00000398729 RAB40ALP0C0E4 278 aa12.94□□□□□ -0.34
VCX3A-202ENST00000398729 ARNTP27540 789 aa12.94□□□□□ -0.34
VCX3A-202ENST00000398729 PKLRP30613 574 aa12.94□□□□□ -0.34
VCX3A-202ENST00000398729 RORAP35398 523 aa12.94□□□□□ -0.34
VCX3A-202ENST00000398729 MAGEA6P43360 314 aa12.94□□□□□ -0.34
VCX3A-202ENST00000398729 PMS2P54278 862 aa12.94□□□□□ -0.34
VCX3A-202ENST00000398729 EIF3BP55884 814 aaKnown RBP12.94□□□□□ -0.34
VCX3A-202ENST00000398729 RPS18P62269 152 aaKnown RBP12.94□□□□□ -0.34
VCX3A-202ENST00000398729 CYP1B1Q16678 543 aa12.94□□□□□ -0.34
VCX3A-202ENST00000398729 KYNUQ16719 465 aa12.94□□□□□ -0.34
VCX3A-202ENST00000398729 UGT8Q16880 541 aa12.94□□□□□ -0.34
VCX3A-202ENST00000398729 SLC5A12Q1EHB4 618 aa12.94□□□□□ -0.34
VCX3A-202ENST00000398729 TTC27Q6P3X3 843 aa12.94□□□□□ -0.34
VCX3A-202ENST00000398729 CASC4Q6P4E1 433 aa12.94□□□□□ -0.34
VCX3A-202ENST00000398729 TTC23LQ6PF05 361 aa12.94□□□□□ -0.34
VCX3A-202ENST00000398729 CCDC137Q6PK04 289 aaKnown RBP12.94□□□□□ -0.34
VCX3A-202ENST00000398729 TMEM135Q86UB9 458 aa12.94□□□□□ -0.34
VCX3A-202ENST00000398729 SYTL1Q8IYJ3 562 aa12.94□□□□□ -0.34
VCX3A-202ENST00000398729 FLVCR1-AS1Q8TAF5 88 aa12.94□□□□□ -0.34
VCX3A-202ENST00000398729 SKA2Q8WVK7 121 aaPredicted RBP12.94□□□□□ -0.34
VCX3A-202ENST00000398729 THAP4Q8WY91 577 aa12.94□□□□□ -0.34
VCX3A-202ENST00000398729 MIB2Q96AX9 1013 aa12.94□□□□□ -0.34
VCX3A-202ENST00000398729 SLC22A18Q96BI1 424 aa12.94□□□□□ -0.34
VCX3A-202ENST00000398729 TCF12Q99081 682 aa12.94□□□□□ -0.34
VCX3A-202ENST00000398729 DPH2Q9BQC3 489 aaPredicted RBP12.94□□□□□ -0.34
VCX3A-202ENST00000398729 NLNQ9BYT8 704 aa12.94□□□□□ -0.34
VCX3A-202ENST00000398729 GRPEL1Q9HAV7 217 aa12.94□□□□□ -0.34
VCX3A-202ENST00000398729 FAM60AQ9NP50 221 aa12.94□□□□□ -0.34
VCX3A-202ENST00000398729 PCMTD2Q9NV79 361 aa12.94□□□□□ -0.34
VCX3A-202ENST00000398729 SAMD15Q9P1V8 674 aa12.94□□□□□ -0.34
VCX3A-202ENST00000398729 SLC39A10Q9ULF5 831 aa12.94□□□□□ -0.34
VCX3A-202ENST00000398729 MRFAP1Q9Y605 127 aa12.94□□□□□ -0.34
Retrieved 100 of 20,778 RNA–protein pairs in 40.8 ms