RNA–Protein interactions for RNA: ENST00000389040.9

VPS53-202, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 1 (best)

Gene VPS53, Length 1,903 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-202ENST00000389040 STMN2Q93045 179 aa9.97□□□□□ -0.81
VPS53-202ENST00000389040 PTERQ96BW5 349 aa9.97□□□□□ -0.81
VPS53-202ENST00000389040 PHF21BQ96EK2 531 aa9.97□□□□□ -0.81
VPS53-202ENST00000389040 FAR2Q96K12 515 aa9.97□□□□□ -0.81
VPS53-202ENST00000389040 LINC00615Q96LM1 132 aaPredicted RBP9.97□□□□□ -0.81
VPS53-202ENST00000389040 GSDMCQ9BYG8 508 aa9.97□□□□□ -0.81
VPS53-202ENST00000389040 ZNF385DQ9H6B1 395 aa9.97□□□□□ -0.81
VPS53-202ENST00000389040 FGF22Q9HCT0 170 aa9.97□□□□□ -0.81
VPS53-202ENST00000389040 EVA1BQ9NVM1 165 aa9.97□□□□□ -0.81
VPS53-202ENST00000389040 NLGN3Q9NZ94 848 aa9.97□□□□□ -0.81
VPS53-202ENST00000389040 ATXN10Q9UBB4 475 aa9.97□□□□□ -0.81
VPS53-202ENST00000389040 SLC7A8Q9UHI5 535 aa9.97□□□□□ -0.81
VPS53-202ENST00000389040 TNRC6BQ9UPQ9 1833 aaKnown RBP9.97□□□□□ -0.81
VPS53-202ENST00000389040 FRYLO94915 3013 aa9.97□□□□□ -0.81
VPS53-202ENST00000389040 A0A088AWK7 358 aa9.96□□□□□ -0.81
VPS53-202ENST00000389040 LOC100653049A0A140TA62 436 aa9.96□□□□□ -0.81
VPS53-202ENST00000389040 C17orf113A0A1B0GUU1 675 aa9.96□□□□□ -0.81
VPS53-202ENST00000389040 AQP9O43315 295 aa9.96□□□□□ -0.81
VPS53-202ENST00000389040 SMIM24O75264 130 aa9.96□□□□□ -0.81
VPS53-202ENST00000389040 NDUFS3O75489 264 aa9.96□□□□□ -0.81
VPS53-202ENST00000389040 KRT34O76011 436 aa9.96□□□□□ -0.81
VPS53-202ENST00000389040 KRT36O76013 467 aa9.96□□□□□ -0.81
VPS53-202ENST00000389040 PSMG1O95456 288 aa9.96□□□□□ -0.81
VPS53-202ENST00000389040 ATP1B2P14415 290 aaPredicted RBP9.96□□□□□ -0.81
VPS53-202ENST00000389040 UGT1A6P19224 532 aa9.96□□□□□ -0.81
VPS53-202ENST00000389040 UGT1A1P22309 533 aa9.96□□□□□ -0.81
VPS53-202ENST00000389040 UGT1A4P22310 534 aa9.96□□□□□ -0.81
VPS53-202ENST00000389040 PIK3R1P27986 724 aa9.96□□□□□ -0.81
VPS53-202ENST00000389040 FMO4P31512 558 aa9.96□□□□□ -0.81
VPS53-202ENST00000389040 UGT1A3P35503 534 aa9.96□□□□□ -0.81
VPS53-202ENST00000389040 UGT1A5P35504 534 aa9.96□□□□□ -0.81
VPS53-202ENST00000389040 KCNC1P48547 511 aa9.96□□□□□ -0.81
VPS53-202ENST00000389040 PLOD1Q02809 727 aaPredicted RBP9.96□□□□□ -0.81
VPS53-202ENST00000389040 CUL3Q13618 768 aa9.96□□□□□ -0.81
VPS53-202ENST00000389040 RCN1Q15293 331 aa9.96□□□□□ -0.81
VPS53-202ENST00000389040 BCL7AQ4VC05 210 aa9.96□□□□□ -0.81
VPS53-202ENST00000389040 NXNQ6DKJ4 435 aa9.96□□□□□ -0.81
VPS53-202ENST00000389040 TAS2R42Q7RTR8 314 aa9.96□□□□□ -0.81
VPS53-202ENST00000389040 CUZD1Q86UP6 607 aa9.96□□□□□ -0.81
VPS53-202ENST00000389040 LRRTM4Q86VH4 590 aa9.96□□□□□ -0.81
VPS53-202ENST00000389040 RBFAQ8N0V3 343 aa9.96□□□□□ -0.81
VPS53-202ENST00000389040 FAM181AQ8N9Y4 354 aa9.96□□□□□ -0.81
VPS53-202ENST00000389040 OR1E3Q8WZA6 343 aa9.96□□□□□ -0.81
VPS53-202ENST00000389040 L3HYPDHQ96EM0 354 aa9.96□□□□□ -0.81
VPS53-202ENST00000389040 MAELQ96JY0 434 aaKnown RBP9.96□□□□□ -0.81
VPS53-202ENST00000389040 OR2M4Q96R27 311 aa9.96□□□□□ -0.81
VPS53-202ENST00000389040 CDC6Q99741 560 aa9.96□□□□□ -0.81
VPS53-202ENST00000389040 TIMM29Q9BSF4 260 aa9.96□□□□□ -0.81
VPS53-202ENST00000389040 TACO1Q9BSH4 297 aaKnown RBP9.96□□□□□ -0.81
VPS53-202ENST00000389040 TRMOQ9BU70 441 aa9.96□□□□□ -0.81
VPS53-202ENST00000389040 CCDC68Q9H2F9 335 aa9.96□□□□□ -0.81
VPS53-202ENST00000389040 SMOC1Q9H4F8 434 aa9.96□□□□□ -0.81
VPS53-202ENST00000389040 GSTO2Q9H4Y5 243 aa9.96□□□□□ -0.81
VPS53-202ENST00000389040 CARS2Q9HA77 564 aaKnown RBP9.96□□□□□ -0.81
VPS53-202ENST00000389040 TAS2R13Q9NYV9 303 aa9.96□□□□□ -0.81
VPS53-202ENST00000389040 TMPRSS11EQ9UL52 423 aa9.96□□□□□ -0.81
VPS53-202ENST00000389040 SUFUQ9UMX1 484 aa9.96□□□□□ -0.81
VPS53-202ENST00000389040 FNDC3AQ9Y2H6 1198 aaKnown RBP9.96□□□□□ -0.81
VPS53-202ENST00000389040 ZFHX2Q9C0A1 2572 aaPredicted RBP9.96□□□□□ -0.82
VPS53-202ENST00000389040 H3BMM5 538 aa9.95□□□□□ -0.82
VPS53-202ENST00000389040 THRAP10827 490 aa9.95□□□□□ -0.82
VPS53-202ENST00000389040 SLC2A4P14672 509 aa9.95□□□□□ -0.82
VPS53-202ENST00000389040 ZNF7P17097 686 aaPredicted RBP9.95□□□□□ -0.82
VPS53-202ENST00000389040 ITGAXP20702 1163 aa9.95□□□□□ -0.82
VPS53-202ENST00000389040 ADSLP30566 484 aaPredicted RBP9.95□□□□□ -0.82
VPS53-202ENST00000389040 AKT1P31749 480 aa9.95□□□□□ -0.82
VPS53-202ENST00000389040 GTF2A1P52655 376 aaPredicted RBP9.95□□□□□ -0.82
VPS53-202ENST00000389040 ACTR3P61158 418 aa9.95□□□□□ -0.82
VPS53-202ENST00000389040 HERVK_113P63132 956 aa9.95□□□□□ -0.82
VPS53-202ENST00000389040 DMPKQ09013 629 aa9.95□□□□□ -0.82
VPS53-202ENST00000389040 SHBQ15464 509 aa9.95□□□□□ -0.82
VPS53-202ENST00000389040 OR4D1Q15615 310 aa9.95□□□□□ -0.82
VPS53-202ENST00000389040 PRRT3Q5FWE3 981 aa9.95□□□□□ -0.82
VPS53-202ENST00000389040 ZNF678Q5SXM1 525 aa9.95□□□□□ -0.82
VPS53-202ENST00000389040 TPRG1LQ5T0D9 272 aa9.95□□□□□ -0.82
VPS53-202ENST00000389040 RIPOR1Q6ZS17 1223 aa9.95□□□□□ -0.82
VPS53-202ENST00000389040 KANSL1Q7Z3B3 1105 aa9.95□□□□□ -0.82
VPS53-202ENST00000389040 SERPINA9Q86WD7 417 aa9.95□□□□□ -0.82
VPS53-202ENST00000389040 SUPV3L1Q8IYB8 786 aaKnown RBP eCLIP9.95□□□□□ -0.82
VPS53-202ENST00000389040 KIRREL3Q8IZU9 778 aa9.95□□□□□ -0.82
VPS53-202ENST00000389040 BEND7Q8N7W2 519 aaPredicted RBP9.95□□□□□ -0.82
VPS53-202ENST00000389040 AVL9Q8NBF6 648 aa9.95□□□□□ -0.82
VPS53-202ENST00000389040 ZNF548Q8NEK5 533 aaPredicted RBP9.95□□□□□ -0.82
VPS53-202ENST00000389040 OR6C4Q8NGE1 309 aa9.95□□□□□ -0.82
VPS53-202ENST00000389040 RHEBL1Q8TAI7 183 aa9.95□□□□□ -0.82
VPS53-202ENST00000389040 GLMNQ92990 594 aa9.95□□□□□ -0.82
VPS53-202ENST00000389040 TSACCQ96A04 125 aaPredicted RBP9.95□□□□□ -0.82
VPS53-202ENST00000389040 FAM136AQ96C01 138 aa9.95□□□□□ -0.82
VPS53-202ENST00000389040 PANX3Q96QZ0 392 aa9.95□□□□□ -0.82
VPS53-202ENST00000389040 RTKNQ9BST9 563 aa9.95□□□□□ -0.82
VPS53-202ENST00000389040 ERVK-6Q9BXR3 956 aa9.95□□□□□ -0.82
VPS53-202ENST00000389040 OR2AG1Q9H205 316 aa9.95□□□□□ -0.82
VPS53-202ENST00000389040 TFB2MQ9H5Q4 396 aaKnown RBP9.95□□□□□ -0.82
VPS53-202ENST00000389040 SYTL2Q9HCH5 934 aa9.95□□□□□ -0.82
VPS53-202ENST00000389040 KLF15Q9UIH9 416 aa9.95□□□□□ -0.82
VPS53-202ENST00000389040 MED16Q9Y2X0 877 aa9.95□□□□□ -0.82
VPS53-202ENST00000389040 TMEM98Q9Y2Y6 226 aa9.95□□□□□ -0.82
VPS53-202ENST00000389040 COMMD10Q9Y6G5 202 aa9.95□□□□□ -0.82
VPS53-202ENST00000389040 OAS3Q9Y6K5 1087 aaKnown RBP9.95□□□□□ -0.82
VPS53-202ENST00000389040 USP34Q70CQ2 3546 aa9.95□□□□□ -0.82
Retrieved 100 of 20,778 RNA–protein pairs in 29.8 ms