RNA–Protein interactions for RNA: ENST00000375820.8

COL4A1-201, Transcript of collagen type IV alpha 1 chain, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene COL4A1, Length 6,532 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A1-201ENST00000375820 OR12D2P58182 307 aa13.46□□□□□ -0.25
COL4A1-201ENST00000375820 HMGCS1Q01581 520 aa13.46□□□□□ -0.25
COL4A1-201ENST00000375820 PLGLB1Q02325 96 aa13.46□□□□□ -0.25
COL4A1-201ENST00000375820 KHDC1Q4VXA5 237 aaKnown RBP13.46□□□□□ -0.25
COL4A1-201ENST00000375820 PRAMEF17Q5VTA0 474 aa13.46□□□□□ -0.25
COL4A1-201ENST00000375820 PYHIN1Q6K0P9 492 aa13.46□□□□□ -0.25
COL4A1-201ENST00000375820 TRMT10BQ6PF06 316 aaKnown RBP13.46□□□□□ -0.25
COL4A1-201ENST00000375820 CPNE8Q86YQ8 564 aa13.46□□□□□ -0.25
COL4A1-201ENST00000375820 NXPE1Q8N323 547 aa13.46□□□□□ -0.25
COL4A1-201ENST00000375820 EBF4Q9BQW3 602 aa13.46□□□□□ -0.25
COL4A1-201ENST00000375820 SLC6A15Q9H2J7 730 aa13.46□□□□□ -0.25
COL4A1-201ENST00000375820 FAM237AA0A1B0GTK4 181 aa13.46□□□□□ -0.25
COL4A1-201ENST00000375820 CREB1P16220 341 aa13.46□□□□□ -0.25
COL4A1-201ENST00000375820 ZNF16P17020 682 aaPredicted RBP13.46□□□□□ -0.25
COL4A1-201ENST00000375820 ARL3P36405 182 aa13.46□□□□□ -0.25
COL4A1-201ENST00000375820 MAGEA12P43365 314 aa13.46□□□□□ -0.25
COL4A1-201ENST00000375820 AIF1P55008 147 aa13.46□□□□□ -0.25
COL4A1-201ENST00000375820 COLEC12Q5KU26 742 aa13.46□□□□□ -0.25
COL4A1-201ENST00000375820 PTF1AQ7RTS3 328 aa13.46□□□□□ -0.25
COL4A1-201ENST00000375820 PROKR2Q8NFJ6 384 aa13.46□□□□□ -0.25
COL4A1-201ENST00000375820 ASB12Q8WXK4 309 aa13.46□□□□□ -0.25
COL4A1-201ENST00000375820 TRMOQ9BU70 441 aa13.46□□□□□ -0.25
COL4A1-201ENST00000375820 MATN3O15232 486 aa13.46□□□□□ -0.25
COL4A1-201ENST00000375820 LGR4Q9BXB1 951 aa13.46□□□□□ -0.25
COL4A1-201ENST00000375820 IRF2BPLQ9H1B7 796 aa13.46□□□□□ -0.25
COL4A1-201ENST00000375820 ATXN10Q9UBB4 475 aa13.46□□□□□ -0.25
COL4A1-201ENST00000375820 GATBO75879 557 aaKnown RBP13.46□□□□□ -0.26
COL4A1-201ENST00000375820 POP4O95707 220 aaKnown RBP13.46□□□□□ -0.26
COL4A1-201ENST00000375820 INHBEP58166 350 aa13.46□□□□□ -0.26
COL4A1-201ENST00000375820 NFKB2Q00653 900 aa13.46□□□□□ -0.26
COL4A1-201ENST00000375820 SCARB2Q14108 478 aa13.46□□□□□ -0.26
COL4A1-201ENST00000375820 LRRC32Q14392 662 aa13.46□□□□□ -0.26
COL4A1-201ENST00000375820 PHF19Q5T6S3 580 aa13.46□□□□□ -0.26
COL4A1-201ENST00000375820 Q8N9G6 341 aaPredicted RBP13.46□□□□□ -0.26
COL4A1-201ENST00000375820 RFKQ969G6 155 aa13.46□□□□□ -0.26
COL4A1-201ENST00000375820 GTPBP2Q9BX10 602 aaKnown RBP13.46□□□□□ -0.26
COL4A1-201ENST00000375820 GDAP2Q9NXN4 497 aa13.46□□□□□ -0.26
COL4A1-201ENST00000375820 FZD10Q9ULW2 581 aa13.46□□□□□ -0.26
COL4A1-201ENST00000375820 SPIN1Q9Y657 262 aaPredicted RBP13.46□□□□□ -0.26
COL4A1-201ENST00000375820 A0A0J9YVX5 310 aa13.46□□□□□ -0.26
COL4A1-201ENST00000375820 HOXC6P09630 235 aa13.46□□□□□ -0.26
COL4A1-201ENST00000375820 OR3A3P47888 321 aa13.46□□□□□ -0.26
COL4A1-201ENST00000375820 OR3A2P47893 321 aa13.46□□□□□ -0.26
COL4A1-201ENST00000375820 S100A10P60903 97 aa13.46□□□□□ -0.26
COL4A1-201ENST00000375820 SCN1BQ07699 218 aa13.46□□□□□ -0.26
COL4A1-201ENST00000375820 GRSF1Q12849 480 aaKnown RBP eCLIP13.46□□□□□ -0.26
COL4A1-201ENST00000375820 IFI44LQ53G44 452 aa13.46□□□□□ -0.26
COL4A1-201ENST00000375820 TMEM198Q66K66 360 aa13.46□□□□□ -0.26
COL4A1-201ENST00000375820 ADNP2Q6IQ32 1131 aa13.46□□□□□ -0.26
COL4A1-201ENST00000375820 FBXL16Q8N461 479 aa13.46□□□□□ -0.26
COL4A1-201ENST00000375820 ELOA3DA6NLF2 546 aaPredicted RBP13.45□□□□□ -0.26
COL4A1-201ENST00000375820 OR2AT4A6NND4 320 aa13.45□□□□□ -0.26
COL4A1-201ENST00000375820 ZNF878C9JN71 531 aa13.45□□□□□ -0.26
COL4A1-201ENST00000375820 C8orf89P0DMQ9 161 aa13.45□□□□□ -0.26
COL4A1-201ENST00000375820 ELOA3BQ3SY89 546 aa13.45□□□□□ -0.26
COL4A1-201ENST00000375820 DUSP28Q4G0W2 176 aa13.45□□□□□ -0.26
COL4A1-201ENST00000375820 HGSNATQ68CP4 663 aa13.45□□□□□ -0.26
COL4A1-201ENST00000375820 ELOA3Q8NG57 546 aa13.45□□□□□ -0.26
COL4A1-201ENST00000375820 SLC39A3Q9BRY0 314 aa13.45□□□□□ -0.26
COL4A1-201ENST00000375820 METTL8Q9H825 291 aaKnown RBP13.45□□□□□ -0.26
COL4A1-201ENST00000375820 RAB26Q9ULW5 256 aa13.45□□□□□ -0.26
COL4A1-201ENST00000375820 C2orf92A0A1B0GVN3 265 aa13.45□□□□□ -0.26
COL4A1-201ENST00000375820 NDUFS4O43181 175 aa13.45□□□□□ -0.26
COL4A1-201ENST00000375820 SLC7A1P30825 629 aa13.45□□□□□ -0.26
COL4A1-201ENST00000375820 SLC3A1Q07837 685 aa13.45□□□□□ -0.26
COL4A1-201ENST00000375820 SLC10A7Q0GE19 358 aa13.45□□□□□ -0.26
COL4A1-201ENST00000375820 ARFRP1Q13795 201 aa13.45□□□□□ -0.26
COL4A1-201ENST00000375820 ZNF782Q6ZMW2 699 aaPredicted RBP13.45□□□□□ -0.26
COL4A1-201ENST00000375820 ZNF548Q8NEK5 533 aaPredicted RBP13.45□□□□□ -0.26
COL4A1-201ENST00000375820 SDCBP2Q9H190 292 aa13.45□□□□□ -0.26
COL4A1-201ENST00000375820 RMI1Q9H9A7 625 aa13.45□□□□□ -0.26
COL4A1-201ENST00000375820 GMEB2Q9UKD1 530 aa13.45□□□□□ -0.26
COL4A1-201ENST00000375820 PPM1HQ9ULR3 514 aa13.45□□□□□ -0.26
COL4A1-201ENST00000375820 DEPDC5O75140 1603 aa13.45□□□□□ -0.26
COL4A1-201ENST00000375820 J3QRK9 145 aa13.45□□□□□ -0.26
COL4A1-201ENST00000375820 TNFRSF10BO14763 440 aa13.45□□□□□ -0.26
COL4A1-201ENST00000375820 B4GALT4O60513 344 aa13.45□□□□□ -0.26
COL4A1-201ENST00000375820 SYN1P17600 705 aa13.45□□□□□ -0.26
COL4A1-201ENST00000375820 EDNRAP25101 427 aa13.45□□□□□ -0.26
COL4A1-201ENST00000375820 HSD11B1P28845 292 aa13.45□□□□□ -0.26
COL4A1-201ENST00000375820 GGT5P36269 586 aa13.45□□□□□ -0.26
COL4A1-201ENST00000375820 MAP3K8P41279 467 aa13.45□□□□□ -0.26
COL4A1-201ENST00000375820 GPD2P43304 727 aa13.45□□□□□ -0.26
COL4A1-201ENST00000375820 KHKP50053 298 aa13.45□□□□□ -0.26
COL4A1-201ENST00000375820 NR0B1P51843 470 aaKnown RBP13.45□□□□□ -0.26
COL4A1-201ENST00000375820 ARSJQ5FYB0 599 aaPredicted RBP13.45□□□□□ -0.26
COL4A1-201ENST00000375820 VSTM1Q6UX27 236 aa13.45□□□□□ -0.26
COL4A1-201ENST00000375820 QSOX2Q6ZRP7 698 aa13.45□□□□□ -0.26
COL4A1-201ENST00000375820 MMAAQ8IVH4 418 aaKnown RBP13.45□□□□□ -0.26
COL4A1-201ENST00000375820 SYNPOQ8N3V7 929 aa13.45□□□□□ -0.26
COL4A1-201ENST00000375820 METTL27Q8N6F8 245 aaPredicted RBP13.45□□□□□ -0.26
COL4A1-201ENST00000375820 CARS2Q9HA77 564 aaKnown RBP13.45□□□□□ -0.26
COL4A1-201ENST00000375820 CXorf21Q9HAI6 301 aa13.45□□□□□ -0.26
COL4A1-201ENST00000375820 SALL4Q9UJQ4 1053 aa13.45□□□□□ -0.26
COL4A1-201ENST00000375820 C11orf97A0A1B0GVM6 126 aaPredicted RBP13.45□□□□□ -0.26
COL4A1-201ENST00000375820 GRXCR1A8MXD5 290 aa13.45□□□□□ -0.26
COL4A1-201ENST00000375820 PDLIM1O00151 329 aa13.45□□□□□ -0.26
COL4A1-201ENST00000375820 PCDH7O60245 1069 aa13.45□□□□□ -0.26
COL4A1-201ENST00000375820 NIPSNAP2O75323 286 aa13.45□□□□□ -0.26
COL4A1-201ENST00000375820 TRAPPC6AO75865 159 aa13.45□□□□□ -0.26
Retrieved 100 of 20,778 RNA–protein pairs in 36.3 ms