RNA–Protein interactions for RNA: ENST00000374116.3

HMGA1-203, Transcript of high mobility group AT-hook 1, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene HMGA1, Length 1,848 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGA1-203ENST00000374116 USP30Q70CQ3 517 aa13.97□□□□□ -0.17
HMGA1-203ENST00000374116 RPS27LQ71UM5 84 aaKnown RBP13.97□□□□□ -0.17
HMGA1-203ENST00000374116 CEP68Q76N32 757 aa13.97□□□□□ -0.17
HMGA1-203ENST00000374116 TSPAN33Q86UF1 283 aa13.97□□□□□ -0.17
HMGA1-203ENST00000374116 CLYBLQ8N0X4 340 aa13.97□□□□□ -0.17
HMGA1-203ENST00000374116 EFCAB3Q8N7B9 438 aa13.97□□□□□ -0.17
HMGA1-203ENST00000374116 PTGR2Q8N8N7 351 aaPredicted RBP13.97□□□□□ -0.17
HMGA1-203ENST00000374116 STAG3L4Q8TBR4 150 aa13.97□□□□□ -0.17
HMGA1-203ENST00000374116 SNX19Q92543 992 aa13.97□□□□□ -0.17
HMGA1-203ENST00000374116 KIAA1191Q96A73 305 aa13.97□□□□□ -0.17
HMGA1-203ENST00000374116 CCDC97Q96F63 343 aaPredicted RBP13.97□□□□□ -0.17
HMGA1-203ENST00000374116 COX4I2Q96KJ9 171 aa13.97□□□□□ -0.17
HMGA1-203ENST00000374116 SPACA7Q96KW9 195 aa13.97□□□□□ -0.17
HMGA1-203ENST00000374116 ATOH8Q96SQ7 321 aa13.97□□□□□ -0.17
HMGA1-203ENST00000374116 HACD3Q9P035 362 aa13.97□□□□□ -0.17
HMGA1-203ENST00000374116 LRRK1Q38SD2 2015 aa13.97□□□□□ -0.17
HMGA1-203ENST00000374116 TRPM6Q9BX84 2022 aa13.97□□□□□ -0.17
HMGA1-203ENST00000374116 SPAG17Q6Q759 2223 aa13.97□□□□□ -0.17
HMGA1-203ENST00000374116 CCDC163A0A0D9SF12 145 aa13.97□□□□□ -0.17
HMGA1-203ENST00000374116 UBA6A0AVT1 1052 aaPredicted RBP13.97□□□□□ -0.17
HMGA1-203ENST00000374116 NPIPB15A6NHN6 443 aaPredicted RBP13.97□□□□□ -0.17
HMGA1-203ENST00000374116 UPK3BL1B0FP48 263 aa13.97□□□□□ -0.17
HMGA1-203ENST00000374116 UPK3BL2E5RIL1 263 aa13.97□□□□□ -0.17
HMGA1-203ENST00000374116 PSMD12O00232 456 aaPredicted RBP13.97□□□□□ -0.17
HMGA1-203ENST00000374116 KERAO60938 352 aa13.97□□□□□ -0.17
HMGA1-203ENST00000374116 SOCS5O75159 536 aa13.97□□□□□ -0.17
HMGA1-203ENST00000374116 ENO3P13929 434 aaPredicted RBP13.97□□□□□ -0.17
HMGA1-203ENST00000374116 CD9P21926 228 aa13.97□□□□□ -0.17
HMGA1-203ENST00000374116 FMO4P31512 558 aa13.97□□□□□ -0.17
HMGA1-203ENST00000374116 HALP42357 657 aa13.97□□□□□ -0.17
HMGA1-203ENST00000374116 NAA20P61599 178 aa13.97□□□□□ -0.17
HMGA1-203ENST00000374116 KCNC4Q03721 635 aa13.97□□□□□ -0.17
HMGA1-203ENST00000374116 SIM2Q14190 667 aaPredicted RBP13.97□□□□□ -0.17
HMGA1-203ENST00000374116 TMEM53Q6P2H8 277 aa13.97□□□□□ -0.17
HMGA1-203ENST00000374116 EID2BQ96D98 161 aa13.97□□□□□ -0.17
HMGA1-203ENST00000374116 MYOCQ99972 504 aa13.97□□□□□ -0.17
HMGA1-203ENST00000374116 C19orf43Q9BQ61 176 aa13.97□□□□□ -0.17
HMGA1-203ENST00000374116 MAGEE1Q9HCI5 957 aa13.97□□□□□ -0.17
HMGA1-203ENST00000374116 MRPL40Q9NQ50 206 aaKnown RBP13.97□□□□□ -0.17
HMGA1-203ENST00000374116 DKK3Q9UBP4 350 aa13.97□□□□□ -0.17
HMGA1-203ENST00000374116 B4GALT6Q9UBX8 382 aa13.97□□□□□ -0.17
HMGA1-203ENST00000374116 FZD4Q9ULV1 537 aa13.97□□□□□ -0.17
HMGA1-203ENST00000374116 ZFR2Q9UPR6 939 aaKnown RBP13.97□□□□□ -0.17
HMGA1-203ENST00000374116 TSPAN11A1L157 253 aa13.96□□□□□ -0.17
HMGA1-203ENST00000374116 H3BMM5 538 aa13.96□□□□□ -0.17
HMGA1-203ENST00000374116 UBXN8O00124 270 aa13.96□□□□□ -0.17
HMGA1-203ENST00000374116 MMP20O60882 483 aa13.96□□□□□ -0.17
HMGA1-203ENST00000374116 IGLV3-19P01714 112 aa13.96□□□□□ -0.17
HMGA1-203ENST00000374116 C7P10643 843 aa13.96□□□□□ -0.17
HMGA1-203ENST00000374116 MTHFD2P13995 350 aa13.96□□□□□ -0.17
HMGA1-203ENST00000374116 ME2P23368 584 aa13.96□□□□□ -0.17
HMGA1-203ENST00000374116 HNF1BP35680 557 aa13.96□□□□□ -0.17
HMGA1-203ENST00000374116 TTPAP49638 278 aa13.96□□□□□ -0.17
HMGA1-203ENST00000374116 PTK2BQ14289 1009 aa13.96□□□□□ -0.17
HMGA1-203ENST00000374116 FASTKQ14296 549 aaKnown RBP13.96□□□□□ -0.17
HMGA1-203ENST00000374116 UGT3A2Q3SY77 523 aa13.96□□□□□ -0.17
HMGA1-203ENST00000374116 PAQR3Q6TCH7 311 aa13.96□□□□□ -0.17
HMGA1-203ENST00000374116 LARP4Q71RC2 724 aaKnown RBP eCLIP13.96□□□□□ -0.179e-8■□□□□ 11.3
HMGA1-203ENST00000374116 PIANPQ8IYJ0 282 aa13.96□□□□□ -0.17
HMGA1-203ENST00000374116 NKAPQ8N5F7 415 aaKnown RBP13.96□□□□□ -0.17
HMGA1-203ENST00000374116 HIPK4Q8NE63 616 aa13.96□□□□□ -0.17
HMGA1-203ENST00000374116 ATOH1Q92858 354 aaPredicted RBP13.96□□□□□ -0.17
HMGA1-203ENST00000374116 EXT2Q93063 718 aa13.96□□□□□ -0.17
HMGA1-203ENST00000374116 HSPA12BQ96MM6 686 aa13.96□□□□□ -0.17
HMGA1-203ENST00000374116 FAM126AQ9BYI3 521 aaPredicted RBP13.96□□□□□ -0.17
HMGA1-203ENST00000374116 DUSP15Q9H1R2 295 aaPredicted RBP13.96□□□□□ -0.17
HMGA1-203ENST00000374116 PALMDQ9NP74 551 aa13.96□□□□□ -0.17
HMGA1-203ENST00000374116 FZD3Q9NPG1 666 aa13.96□□□□□ -0.17
HMGA1-203ENST00000374116 IL17CQ9P0M4 197 aa13.96□□□□□ -0.17
HMGA1-203ENST00000374116 OAS3Q9Y6K5 1087 aaKnown RBP13.96□□□□□ -0.17
HMGA1-203ENST00000374116 FANCMQ8IYD8 2048 aa13.96□□□□□ -0.18
HMGA1-203ENST00000374116 PLXND1Q9Y4D7 1925 aa13.96□□□□□ -0.18
HMGA1-203ENST00000374116 IGLON5A6NGN9 336 aa13.95□□□□□ -0.18
HMGA1-203ENST00000374116 SYCE1LA8MT33 242 aa13.95□□□□□ -0.18
HMGA1-203ENST00000374116 H3BSA7 217 aa13.95□□□□□ -0.18
HMGA1-203ENST00000374116 AREL1O15033 823 aa13.95□□□□□ -0.18
HMGA1-203ENST00000374116 CFLARO15519 480 aa13.95□□□□□ -0.18
HMGA1-203ENST00000374116 VPS26AO75436 327 aa13.95□□□□□ -0.18
HMGA1-203ENST00000374116 GFAPP14136 432 aa13.95□□□□□ -0.18
HMGA1-203ENST00000374116 LHCGRP22888 699 aa13.95□□□□□ -0.18
HMGA1-203ENST00000374116 HMGCLP35914 325 aa13.95□□□□□ -0.18
HMGA1-203ENST00000374116 CDKN1CP49918 316 aaPredicted RBP13.95□□□□□ -0.18
HMGA1-203ENST00000374116 THOP1P52888 689 aa13.95□□□□□ -0.18
HMGA1-203ENST00000374116 SH3BP2P78314 561 aa13.95□□□□□ -0.18
HMGA1-203ENST00000374116 PFKFB4Q16877 469 aa13.95□□□□□ -0.18
HMGA1-203ENST00000374116 AARS2Q5JTZ9 985 aaKnown RBP13.95□□□□□ -0.18
HMGA1-203ENST00000374116 CLEC6AQ6EIG7 209 aa13.95□□□□□ -0.18
HMGA1-203ENST00000374116 GK5Q6ZS86 529 aa13.95□□□□□ -0.18
HMGA1-203ENST00000374116 RFLNAQ6ZTI6 216 aa13.95□□□□□ -0.18
HMGA1-203ENST00000374116 FAM131CQ96AQ9 280 aa13.95□□□□□ -0.18
HMGA1-203ENST00000374116 BIRC7Q96CA5 298 aa13.95□□□□□ -0.18
HMGA1-203ENST00000374116 C19orf60Q96EN9 201 aa13.95□□□□□ -0.18
HMGA1-203ENST00000374116 PHOX2BQ99453 314 aa13.95□□□□□ -0.18
HMGA1-203ENST00000374116 PRPF18Q99633 342 aaKnown RBP13.95□□□□□ -0.18
HMGA1-203ENST00000374116 NPAS2Q99743 824 aa13.95□□□□□ -0.18
HMGA1-203ENST00000374116 SGK2Q9HBY8 427 aa13.95□□□□□ -0.18
HMGA1-203ENST00000374116 FKBPLQ9UIM3 349 aa13.95□□□□□ -0.18
HMGA1-203ENST00000374116 RIMS3Q9UJD0 308 aa13.95□□□□□ -0.18
HMGA1-203ENST00000374116 RNF112Q9ULX5 631 aa13.95□□□□□ -0.18
HMGA1-203ENST00000374116 CA5BQ9Y2D0 317 aa13.95□□□□□ -0.18
Retrieved 100 of 20,778 RNA–protein pairs in 30 ms