RNA–Protein interactions for RNA: ENST00000372405.1

PTPRF-202, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 1 (best)

Gene PTPRF, Length 1,962 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-202ENST00000372405 DPEP2Q9H4A9 486 aa13.41□□□□□ -0.26
PTPRF-202ENST00000372405 PREBQ9HCU5 417 aa13.41□□□□□ -0.26
PTPRF-202ENST00000372405 SLC2A4RGQ9NR83 387 aa13.41□□□□□ -0.26
PTPRF-202ENST00000372405 DNAJC11Q9NVH1 559 aa13.41□□□□□ -0.26
PTPRF-202ENST00000372405 AIG1Q9NVV5 245 aa13.41□□□□□ -0.26
PTPRF-202ENST00000372405 KLQ9UEF7 1012 aa13.41□□□□□ -0.26
PTPRF-202ENST00000372405 SLC7A8Q9UHI5 535 aa13.41□□□□□ -0.26
PTPRF-202ENST00000372405 BAIAP2L1Q9UHR4 511 aa13.41□□□□□ -0.26
PTPRF-202ENST00000372405 ZNHIT2Q9UHR6 403 aa13.41□□□□□ -0.26
PTPRF-202ENST00000372405 MMP17Q9ULZ9 603 aa13.41□□□□□ -0.26
PTPRF-202ENST00000372405 SCML1Q9UN30 329 aa13.41□□□□□ -0.26
PTPRF-202ENST00000372405 PABPN1LA6NDY0 278 aaKnown RBP13.41□□□□□ -0.26
PTPRF-202ENST00000372405 C9JVG2 144 aa13.41□□□□□ -0.26
PTPRF-202ENST00000372405 MANBAO00462 879 aa13.41□□□□□ -0.26
PTPRF-202ENST00000372405 ENTPD5O75356 428 aa13.41□□□□□ -0.26
PTPRF-202ENST00000372405 CLDN9O95484 217 aa13.41□□□□□ -0.26
PTPRF-202ENST00000372405 SRFP11831 508 aa13.41□□□□□ -0.26
PTPRF-202ENST00000372405 GABRG2P18507 467 aa13.41□□□□□ -0.26
PTPRF-202ENST00000372405 ACSL1P33121 698 aa13.41□□□□□ -0.26
PTPRF-202ENST00000372405 TFF2Q03403 129 aa13.41□□□□□ -0.26
PTPRF-202ENST00000372405 KIF19Q2TAC6 998 aa13.41□□□□□ -0.26
PTPRF-202ENST00000372405 FBXO43Q4G163 708 aa13.41□□□□□ -0.26
PTPRF-202ENST00000372405 PGM2L1Q6PCE3 622 aa13.41□□□□□ -0.26
PTPRF-202ENST00000372405 Q6ZS52 159 aa13.41□□□□□ -0.26
PTPRF-202ENST00000372405 RNF165Q6ZSG1 346 aa13.41□□□□□ -0.26
PTPRF-202ENST00000372405 AMZ2Q86W34 360 aa13.41□□□□□ -0.26
PTPRF-202ENST00000372405 KLHDC8AQ8IYD2 350 aa13.41□□□□□ -0.26
PTPRF-202ENST00000372405 DSELQ8IZU8 1212 aa13.41□□□□□ -0.26
PTPRF-202ENST00000372405 CHCHD4Q8N4Q1 142 aa13.41□□□□□ -0.26
PTPRF-202ENST00000372405 LMNTD1Q8N9Z9 388 aa13.41□□□□□ -0.26
PTPRF-202ENST00000372405 L3MBTL4Q8NA19 623 aa13.41□□□□□ -0.26
PTPRF-202ENST00000372405 TEX37Q96LM6 180 aa13.41□□□□□ -0.26
PTPRF-202ENST00000372405 FOPNLQ96NB1 174 aa13.41□□□□□ -0.26
PTPRF-202ENST00000372405 MYOCQ99972 504 aa13.41□□□□□ -0.26
PTPRF-202ENST00000372405 ACTR8Q9H981 624 aa13.41□□□□□ -0.26
PTPRF-202ENST00000372405 MRGBPQ9NV56 204 aa13.41□□□□□ -0.26
PTPRF-202ENST00000372405 TCRBV21S2A2A0A5A6 115 aa13.4□□□□□ -0.26
PTPRF-202ENST00000372405 SLC31A1O15431 190 aa13.4□□□□□ -0.26
PTPRF-202ENST00000372405 MYCLP1P12525 358 aaPredicted RBP13.4□□□□□ -0.26
PTPRF-202ENST00000372405 CD22P20273 847 aa13.4□□□□□ -0.26
PTPRF-202ENST00000372405 DPP6P42658 865 aa13.4□□□□□ -0.26
PTPRF-202ENST00000372405 MAPK9P45984 424 aa13.4□□□□□ -0.26
PTPRF-202ENST00000372405 ZFP36L2P47974 494 aaKnown RBP13.4□□□□□ -0.26
PTPRF-202ENST00000372405 MRPL19P49406 292 aaKnown RBP13.4□□□□□ -0.26
PTPRF-202ENST00000372405 ERVK-8P63133 956 aa13.4□□□□□ -0.26
PTPRF-202ENST00000372405 NAE1Q13564 534 aa13.4□□□□□ -0.26
PTPRF-202ENST00000372405 KPNB1Q14974 876 aaKnown RBP13.4□□□□□ -0.26
PTPRF-202ENST00000372405 CPSF6Q16630 551 aaKnown RBP eCLIP13.4□□□□□ -0.26
PTPRF-202ENST00000372405 GGTA1PQ4G0N0 100 aa13.4□□□□□ -0.26
PTPRF-202ENST00000372405 EOGTQ5NDL2 527 aa13.4□□□□□ -0.26
PTPRF-202ENST00000372405 KIAA1324Q6UXG2 1013 aaKnown RBP13.4□□□□□ -0.26
PTPRF-202ENST00000372405 SPATA19Q7Z5L4 167 aa13.4□□□□□ -0.26
PTPRF-202ENST00000372405 KBTBD6Q86V97 674 aa13.4□□□□□ -0.26
PTPRF-202ENST00000372405 THOC6Q86W42 341 aaKnown RBP13.4□□□□□ -0.26
PTPRF-202ENST00000372405 MYLK4Q86YV6 388 aaPredicted RBP13.4□□□□□ -0.26
PTPRF-202ENST00000372405 EFCAB3Q8N7B9 438 aa13.4□□□□□ -0.26
PTPRF-202ENST00000372405 KYQ8NBH2 561 aa13.4□□□□□ -0.26
PTPRF-202ENST00000372405 OR56A3Q8NH54 315 aa13.4□□□□□ -0.26
PTPRF-202ENST00000372405 ZNF480Q8WV37 535 aa13.4□□□□□ -0.26
PTPRF-202ENST00000372405 CDX2Q99626 313 aaPredicted RBP13.4□□□□□ -0.26
PTPRF-202ENST00000372405 SLC29A3Q9BZD2 475 aa13.4□□□□□ -0.26
PTPRF-202ENST00000372405 BRINP2Q9C0B6 783 aa13.4□□□□□ -0.26
PTPRF-202ENST00000372405 SLC52A3Q9NQ40 469 aa13.4□□□□□ -0.26
PTPRF-202ENST00000372405 RIC8BQ9NVN3 520 aa13.4□□□□□ -0.26
PTPRF-202ENST00000372405 NDRG2Q9UN36 371 aaKnown RBP13.4□□□□□ -0.26
PTPRF-202ENST00000372405 WFS1O76024 890 aa13.4□□□□□ -0.27
PTPRF-202ENST00000372405 CEACAM5P06731 702 aa13.4□□□□□ -0.27
PTPRF-202ENST00000372405 SNRPB2P08579 225 aaKnown RBP13.4□□□□□ -0.27
PTPRF-202ENST00000372405 IDO1P14902 403 aa13.4□□□□□ -0.27
PTPRF-202ENST00000372405 TPMTP51580 245 aa13.4□□□□□ -0.27
PTPRF-202ENST00000372405 STX1BP61266 288 aa13.4□□□□□ -0.27
PTPRF-202ENST00000372405 PLOD1Q02809 727 aaPredicted RBP13.4□□□□□ -0.27
PTPRF-202ENST00000372405 TBL3Q12788 808 aaKnown RBP13.4□□□□□ -0.27
PTPRF-202ENST00000372405 TDGQ13569 410 aa13.4□□□□□ -0.27
PTPRF-202ENST00000372405 GSTA3Q16772 222 aa13.4□□□□□ -0.27
PTPRF-202ENST00000372405 ATP6AP1LQ52LC2 224 aa13.4□□□□□ -0.27
PTPRF-202ENST00000372405 RFTN2Q52LD8 501 aaPredicted RBP13.4□□□□□ -0.27
PTPRF-202ENST00000372405 SGO1Q5FBB7 561 aa13.4□□□□□ -0.27
PTPRF-202ENST00000372405 WASHC2DQ5SRD0 308 aa13.4□□□□□ -0.27
PTPRF-202ENST00000372405 METRNLQ641Q3 311 aa13.4□□□□□ -0.27
PTPRF-202ENST00000372405 TRIM46Q7Z4K8 759 aa13.4□□□□□ -0.27
PTPRF-202ENST00000372405 PDZD3Q86UT5 571 aa13.4□□□□□ -0.27
PTPRF-202ENST00000372405 ZNF687Q8N1G0 1237 aa13.4□□□□□ -0.27
PTPRF-202ENST00000372405 ARHGAP24Q8N264 748 aa13.4□□□□□ -0.27
PTPRF-202ENST00000372405 MIER2Q8N344 545 aa13.4□□□□□ -0.27
PTPRF-202ENST00000372405 PHPT1Q9NRX4 125 aaPredicted RBP13.4□□□□□ -0.27
PTPRF-202ENST00000372405 EBF1Q9UH73 591 aa13.4□□□□□ -0.27
PTPRF-202ENST00000372405 ZNF490Q9ULM2 529 aaPredicted RBP13.4□□□□□ -0.27
PTPRF-202ENST00000372405 ULK1O75385 1050 aa13.39□□□□□ -0.27
PTPRF-202ENST00000372405 PDE5AO76074 875 aa13.39□□□□□ -0.27
PTPRF-202ENST00000372405 PDYNP01213 254 aa13.39□□□□□ -0.27
PTPRF-202ENST00000372405 HMGCS1Q01581 520 aa13.39□□□□□ -0.27
PTPRF-202ENST00000372405 RPA4Q13156 261 aa13.39□□□□□ -0.27
PTPRF-202ENST00000372405 LRP8Q14114 963 aa13.39□□□□□ -0.27
PTPRF-202ENST00000372405 NR6A1Q15406 480 aa13.39□□□□□ -0.27
PTPRF-202ENST00000372405 REP15Q6BDI9 236 aa13.39□□□□□ -0.27
PTPRF-202ENST00000372405 RETREG3Q86VR2 466 aa13.39□□□□□ -0.27
PTPRF-202ENST00000372405 FNDC5Q8NAU1 212 aa13.39□□□□□ -0.27
PTPRF-202ENST00000372405 ATL1Q8WXF7 558 aa13.39□□□□□ -0.27
PTPRF-202ENST00000372405 HLA-CQ95604 372 aa13.39□□□□□ -0.27
Retrieved 100 of 20,778 RNA–protein pairs in 40.3 ms