RNA–Protein interactions for RNA: ENST00000354504.7

VPS54-202, Transcript of VPS54, GARP complex subunit, humanhuman

TSL 1 (best) BASIC

Gene VPS54, Length 3,594 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS54-202ENST00000354504 PRRC2BQ5JSZ5 2229 aaKnown RBP2.27□□□□□ -2.05
VPS54-202ENST00000354504 ILVBLA1L0T0 632 aa2.27□□□□□ -2.05
VPS54-202ENST00000354504 CCDC162PA2VCL2 907 aa2.27□□□□□ -2.05
VPS54-202ENST00000354504 PRSS29PA6NIE9 313 aa2.27□□□□□ -2.05
VPS54-202ENST00000354504 SMIM23A6NLE4 172 aa2.27□□□□□ -2.05
VPS54-202ENST00000354504 CREB3O43889 395 aa2.27□□□□□ -2.05
VPS54-202ENST00000354504 ACSL4O60488 711 aa2.27□□□□□ -2.05
VPS54-202ENST00000354504 GOT2P00505 430 aaKnown RBP2.27□□□□□ -2.05
VPS54-202ENST00000354504 JCHAINP01591 159 aa2.27□□□□□ -2.05
VPS54-202ENST00000354504 CYBBP04839 570 aa2.27□□□□□ -2.05
VPS54-202ENST00000354504 CNPP09543 421 aaKnown RBP2.27□□□□□ -2.05
VPS54-202ENST00000354504 ZNF888P0CJ79 500 aaPredicted RBP2.27□□□□□ -2.05
VPS54-202ENST00000354504 HRH2P25021 359 aa2.27□□□□□ -2.05
VPS54-202ENST00000354504 CD40P25942 277 aa2.27□□□□□ -2.05
VPS54-202ENST00000354504 CCR1P32246 355 aa2.27□□□□□ -2.05
VPS54-202ENST00000354504 CD70P32970 193 aa2.27□□□□□ -2.05
VPS54-202ENST00000354504 SLC6A12P48065 614 aa2.27□□□□□ -2.05
VPS54-202ENST00000354504 PRMT2P55345 433 aa2.27□□□□□ -2.05
VPS54-202ENST00000354504 C21orf58P58505 322 aa2.27□□□□□ -2.05
VPS54-202ENST00000354504 RAE1P78406 368 aaKnown RBP2.27□□□□□ -2.05
VPS54-202ENST00000354504 CDH17Q12864 832 aa2.27□□□□□ -2.05
VPS54-202ENST00000354504 TRAF3Q13114 568 aa2.27□□□□□ -2.05
VPS54-202ENST00000354504 APOFQ13790 326 aa2.27□□□□□ -2.05
VPS54-202ENST00000354504 RCN2Q14257 317 aa2.27□□□□□ -2.05
VPS54-202ENST00000354504 GK3PQ14409 553 aa2.27□□□□□ -2.05
VPS54-202ENST00000354504 USP10Q14694 798 aaKnown RBP2.27□□□□□ -2.05
VPS54-202ENST00000354504 CNGA3Q16281 694 aa2.27□□□□□ -2.05
VPS54-202ENST00000354504 ARL13AQ5H913 290 aaPredicted RBP2.27□□□□□ -2.05
VPS54-202ENST00000354504 GKAP1Q5VSY0 366 aaPredicted RBP2.27□□□□□ -2.05
VPS54-202ENST00000354504 PAQR3Q6TCH7 311 aa2.27□□□□□ -2.05
VPS54-202ENST00000354504 RAPH1Q70E73 1250 aa2.27□□□□□ -2.05
VPS54-202ENST00000354504 ZNF365Q70YC5 407 aa2.27□□□□□ -2.05
VPS54-202ENST00000354504 TECPR1Q7Z6L1 1165 aa2.27□□□□□ -2.05
VPS54-202ENST00000354504 ADGRD2Q7Z7M1 963 aa2.27□□□□□ -2.05
VPS54-202ENST00000354504 LDB1Q86U70 411 aaPredicted RBP2.27□□□□□ -2.05
VPS54-202ENST00000354504 CALHM3Q86XJ0 350 aa2.27□□□□□ -2.05
VPS54-202ENST00000354504 FAM129CQ86XR2 697 aa2.27□□□□□ -2.05
VPS54-202ENST00000354504 LRRC49Q8IUZ0 686 aa2.27□□□□□ -2.05
VPS54-202ENST00000354504 C10orf67Q8IYJ2 551 aa2.27□□□□□ -2.05
VPS54-202ENST00000354504 CACNA2D3Q8IZS8 1091 aa2.27□□□□□ -2.05
VPS54-202ENST00000354504 PDIK1LQ8N165 341 aa2.27□□□□□ -2.05
VPS54-202ENST00000354504 CFAP52Q8N1V2 620 aa2.27□□□□□ -2.05
VPS54-202ENST00000354504 SPATA6LQ8N4H0 392 aa2.27□□□□□ -2.05
VPS54-202ENST00000354504 OR7D4Q8NG98 312 aa2.27□□□□□ -2.05
VPS54-202ENST00000354504 OR10H5Q8NGA6 315 aa2.27□□□□□ -2.05
VPS54-202ENST00000354504 RDH11Q8TC12 318 aa2.27□□□□□ -2.05
VPS54-202ENST00000354504 MGARPQ8TDB4 240 aa2.27□□□□□ -2.05
VPS54-202ENST00000354504 PDCD6IPQ8WUM4 868 aaKnown RBP2.27□□□□□ -2.05
VPS54-202ENST00000354504 KCTD4Q8WVF5 259 aa2.27□□□□□ -2.05
VPS54-202ENST00000354504 AUTS2Q8WXX7 1259 aa2.27□□□□□ -2.05
VPS54-202ENST00000354504 SERPINB11Q96P15 392 aa2.27□□□□□ -2.05
VPS54-202ENST00000354504 AGAP3Q96P47 875 aa2.27□□□□□ -2.05
VPS54-202ENST00000354504 APOL2Q9BQE5 337 aa2.27□□□□□ -2.05
VPS54-202ENST00000354504 TTPALQ9BTX7 342 aa2.27□□□□□ -2.05
VPS54-202ENST00000354504 TSSK1BQ9BXA7 367 aa2.27□□□□□ -2.05
VPS54-202ENST00000354504 SYNCQ9H7C4 482 aa2.27□□□□□ -2.05
VPS54-202ENST00000354504 NTN4Q9HB63 628 aa2.27□□□□□ -2.05
VPS54-202ENST00000354504 HCFC1R1Q9NWW0 138 aa2.27□□□□□ -2.05
VPS54-202ENST00000354504 HEY2Q9UBP5 337 aa2.27□□□□□ -2.05
VPS54-202ENST00000354504 TRPS1Q9UHF7 1281 aa2.27□□□□□ -2.05
VPS54-202ENST00000354504 PTBP2Q9UKA9 531 aaKnown RBP2.27□□□□□ -2.05
VPS54-202ENST00000354504 HS3ST2Q9Y278 367 aa2.27□□□□□ -2.05
VPS54-202ENST00000354504 YIPF1Q9Y548 306 aa2.27□□□□□ -2.05
VPS54-202ENST00000354504 CMYA5Q8N3K9 4069 aa2.27□□□□□ -2.05
VPS54-202ENST00000354504 PHF3Q92576 2039 aaKnown RBP2.27□□□□□ -2.05
VPS54-202ENST00000354504 MAP1BP46821 2468 aaKnown RBP2.27□□□□□ -2.05
VPS54-202ENST00000354504 MAGEB16A2A368 324 aa2.27□□□□□ -2.05
VPS54-202ENST00000354504 SLC22A2O15244 555 aa2.27□□□□□ -2.05
VPS54-202ENST00000354504 SNAP91O60641 907 aa2.27□□□□□ -2.05
VPS54-202ENST00000354504 IFNB1P01574 187 aa2.27□□□□□ -2.05
VPS54-202ENST00000354504 MPOP05164 745 aa2.27□□□□□ -2.05
VPS54-202ENST00000354504 ATP5BP06576 529 aaKnown RBP2.27□□□□□ -2.05
VPS54-202ENST00000354504 ADRA2AP08913 450 aa2.27□□□□□ -2.05
VPS54-202ENST00000354504 RPS3P23396 243 aaKnown RBP eCLIP2.27□□□□□ -2.05
VPS54-202ENST00000354504 PEX2P28328 305 aa2.27□□□□□ -2.05
VPS54-202ENST00000354504 CD86P42081 329 aa2.27□□□□□ -2.05
VPS54-202ENST00000354504 SSR1P43307 286 aaKnown RBP2.27□□□□□ -2.05
VPS54-202ENST00000354504 CDH4P55283 916 aa2.27□□□□□ -2.05
VPS54-202ENST00000354504 WNT3P56703 355 aa2.27□□□□□ -2.05
VPS54-202ENST00000354504 TPI1P60174 286 aa2.27□□□□□ -2.05
VPS54-202ENST00000354504 RAB1AP62820 205 aa2.27□□□□□ -2.05
VPS54-202ENST00000354504 SMARCB1Q12824 385 aa2.27□□□□□ -2.05
VPS54-202ENST00000354504 SLC14A1Q13336 389 aa2.27□□□□□ -2.05
VPS54-202ENST00000354504 HERC3Q15034 1050 aa2.27□□□□□ -2.05
VPS54-202ENST00000354504 CHI3L2Q15782 390 aa2.27□□□□□ -2.05
VPS54-202ENST00000354504 ANO4Q32M45 955 aa2.27□□□□□ -2.05
VPS54-202ENST00000354504 CCDC153Q494R4 210 aa2.27□□□□□ -2.05
VPS54-202ENST00000354504 INO80DQ53TQ3 878 aaPredicted RBP2.27□□□□□ -2.05
VPS54-202ENST00000354504 MPP7Q5T2T1 576 aa2.27□□□□□ -2.05
VPS54-202ENST00000354504 LIPMQ5VYY2 423 aa2.27□□□□□ -2.05
VPS54-202ENST00000354504 PLPP4Q5VZY2 271 aa2.27□□□□□ -2.05
VPS54-202ENST00000354504 RAP1GAP2Q684P5 730 aa2.27□□□□□ -2.05
VPS54-202ENST00000354504 PDPK2PQ6A1A2 396 aa2.27□□□□□ -2.05
VPS54-202ENST00000354504 KIAA1841Q6NSI8 718 aa2.27□□□□□ -2.05
VPS54-202ENST00000354504 UGT2A3Q6UWM9 527 aa2.27□□□□□ -2.05
VPS54-202ENST00000354504 TMEM184AQ6ZMB5 413 aa2.27□□□□□ -2.05
VPS54-202ENST00000354504 PRR23BQ6ZRT6 265 aa2.27□□□□□ -2.05
VPS54-202ENST00000354504 KIAA0408Q6ZU52 694 aa2.27□□□□□ -2.05
VPS54-202ENST00000354504 USP51Q70EK9 711 aa2.27□□□□□ -2.05
VPS54-202ENST00000354504 TAOK1Q7L7X3 1001 aa2.27□□□□□ -2.05
Retrieved 100 of 20,778 RNA–protein pairs in 28.9 ms