RNA–Protein interactions for RNA: ENST00000308508.5

CSPG4-201, Transcript of chondroitin sulfate proteoglycan 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CSPG4, Length 8,290 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSPG4-201ENST00000308508 HTR2AP28223 471 aa13.62□□□□□ -0.23
CSPG4-201ENST00000308508 SMSP52788 366 aa13.62□□□□□ -0.23
CSPG4-201ENST00000308508 ZNF45Q02386 682 aa13.62□□□□□ -0.23
CSPG4-201ENST00000308508 GFOD2Q3B7J2 385 aa13.62□□□□□ -0.23
CSPG4-201ENST00000308508 FOXRED2Q8IWF2 684 aa13.62□□□□□ -0.23
CSPG4-201ENST00000308508 C12orf29Q8N999 325 aa13.62□□□□□ -0.23
CSPG4-201ENST00000308508 CPT1BQ92523 772 aa13.62□□□□□ -0.23
CSPG4-201ENST00000308508 NDC1Q9BTX1 674 aa13.62□□□□□ -0.23
CSPG4-201ENST00000308508 PTBP2Q9UKA9 531 aaKnown RBP13.62□□□□□ -0.23
CSPG4-201ENST00000308508 CACNA1FO60840 1977 aa13.62□□□□□ -0.23
CSPG4-201ENST00000308508 CLDN11O75508 207 aa13.62□□□□□ -0.23
CSPG4-201ENST00000308508 MTPNP58546 118 aa13.62□□□□□ -0.23
CSPG4-201ENST00000308508 TBC1D25Q3MII6 688 aa13.62□□□□□ -0.23
CSPG4-201ENST00000308508 SH3D19Q5HYK7 790 aa13.62□□□□□ -0.23
CSPG4-201ENST00000308508 MON1AQ86VX9 555 aa13.62□□□□□ -0.23
CSPG4-201ENST00000308508 MAB21L3Q8N8X9 362 aa13.62□□□□□ -0.23
CSPG4-201ENST00000308508 RBM18Q96H35 190 aaKnown RBP13.62□□□□□ -0.23
CSPG4-201ENST00000308508 SCP2D1Q9UJQ7 156 aa13.62□□□□□ -0.23
CSPG4-201ENST00000308508 YDJCA8MPS7 323 aa13.62□□□□□ -0.23
CSPG4-201ENST00000308508 PQBP1O60828 265 aaKnown RBP13.62□□□□□ -0.23
CSPG4-201ENST00000308508 ZFAND2BQ8WV99 257 aa13.62□□□□□ -0.23
CSPG4-201ENST00000308508 GEMIN6Q8WXD5 167 aaKnown RBP13.62□□□□□ -0.23
CSPG4-201ENST00000308508 KCNC2Q96PR1 638 aa13.62□□□□□ -0.23
CSPG4-201ENST00000308508 TNFRSF10DQ9UBN6 386 aa13.62□□□□□ -0.23
CSPG4-201ENST00000308508 TCAF1Q9Y4C2 921 aa13.62□□□□□ -0.23
CSPG4-201ENST00000308508 ADGRB3O60242 1522 aa13.62□□□□□ -0.23
CSPG4-201ENST00000308508 NUMA1Q14980 2115 aa13.62□□□□□ -0.23
CSPG4-201ENST00000308508 ARL6IP5O75915 188 aa13.62□□□□□ -0.23
CSPG4-201ENST00000308508 ZNF81P51508 661 aa13.62□□□□□ -0.23
CSPG4-201ENST00000308508 ZNF404Q494X3 552 aa13.62□□□□□ -0.23
CSPG4-201ENST00000308508 ANKDD1AQ495B1 522 aa13.62□□□□□ -0.23
CSPG4-201ENST00000308508 TMED9Q9BVK6 235 aa13.62□□□□□ -0.23
CSPG4-201ENST00000308508 RGCCQ9H4X1 137 aa13.62□□□□□ -0.23
CSPG4-201ENST00000308508 CHRAC1Q9NRG0 131 aa13.62□□□□□ -0.23
CSPG4-201ENST00000308508 TMEM184CQ9NVA4 438 aa13.62□□□□□ -0.23
CSPG4-201ENST00000308508 GRM6O15303 877 aa13.62□□□□□ -0.23
CSPG4-201ENST00000308508 SLC35G6P0C7Q6 338 aa13.62□□□□□ -0.23
CSPG4-201ENST00000308508 CRISP3P54108 245 aa13.62□□□□□ -0.23
CSPG4-201ENST00000308508 TOP6BLQ8N6T0 577 aa13.62□□□□□ -0.23
CSPG4-201ENST00000308508 NR2E1Q9Y466 385 aa13.62□□□□□ -0.23
CSPG4-201ENST00000308508 TEX13CA0A0J9YWL9 993 aa13.62□□□□□ -0.23
CSPG4-201ENST00000308508 DISC1C4P0D8 188 aa13.62□□□□□ -0.23
CSPG4-201ENST00000308508 KLRC4O43908 158 aa13.62□□□□□ -0.23
CSPG4-201ENST00000308508 CHRM5P08912 532 aaPredicted RBP13.62□□□□□ -0.23
CSPG4-201ENST00000308508 MSL3P1P0C860 447 aa13.62□□□□□ -0.23
CSPG4-201ENST00000308508 MMP8P22894 467 aa13.62□□□□□ -0.23
CSPG4-201ENST00000308508 PLA2G4EQ3MJ16 856 aa13.62□□□□□ -0.23
CSPG4-201ENST00000308508 SSX6Q7RTT6 188 aa13.62□□□□□ -0.23
CSPG4-201ENST00000308508 C12orf50Q8NA57 414 aaPredicted RBP13.62□□□□□ -0.23
CSPG4-201ENST00000308508 SOCS4Q8WXH5 440 aa13.62□□□□□ -0.23
CSPG4-201ENST00000308508 PSKH2Q96QS6 385 aa13.62□□□□□ -0.23
CSPG4-201ENST00000308508 WACQ9BTA9 647 aa13.62□□□□□ -0.23
CSPG4-201ENST00000308508 SMURF1Q9HCE7 757 aa13.62□□□□□ -0.23
CSPG4-201ENST00000308508 PLD2O14939 933 aa13.61□□□□□ -0.23
CSPG4-201ENST00000308508 CDKN2BP42772 138 aa13.61□□□□□ -0.23
CSPG4-201ENST00000308508 IGSF9Q9P2J2 1179 aa13.61□□□□□ -0.23
CSPG4-201ENST00000308508 M0R129 80 aa13.61□□□□□ -0.23
CSPG4-201ENST00000308508 TLR4O00206 839 aa13.61□□□□□ -0.23
CSPG4-201ENST00000308508 NARSO43776 548 aaKnown RBP13.61□□□□□ -0.23
CSPG4-201ENST00000308508 MYCLP1P12525 358 aaPredicted RBP13.61□□□□□ -0.23
CSPG4-201ENST00000308508 PTP4A2Q12974 167 aa13.61□□□□□ -0.23
CSPG4-201ENST00000308508 ARSKQ6UWY0 536 aa13.61□□□□□ -0.23
CSPG4-201ENST00000308508 LRRN1Q6UXK5 716 aa13.61□□□□□ -0.23
CSPG4-201ENST00000308508 TMED4Q7Z7H5 227 aa13.61□□□□□ -0.23
CSPG4-201ENST00000308508 MARCH9Q86YJ5 346 aa13.61□□□□□ -0.23
CSPG4-201ENST00000308508 ZNF709Q8N972 641 aa13.61□□□□□ -0.23
CSPG4-201ENST00000308508 COQ8AQ8NI60 647 aa13.61□□□□□ -0.23
CSPG4-201ENST00000308508 GDAP2Q9NXN4 497 aa13.61□□□□□ -0.23
CSPG4-201ENST00000308508 E9PCH4 1651 aa13.61□□□□□ -0.23
CSPG4-201ENST00000308508 LGALS2P05162 132 aa13.61□□□□□ -0.23
CSPG4-201ENST00000308508 MSR1P21757 451 aa13.61□□□□□ -0.23
CSPG4-201ENST00000308508 TUBG1P23258 451 aa13.61□□□□□ -0.23
CSPG4-201ENST00000308508 EDNRAP25101 427 aa13.61□□□□□ -0.23
CSPG4-201ENST00000308508 SCNN1GP51170 649 aa13.61□□□□□ -0.23
CSPG4-201ENST00000308508 FASTKD3Q14CZ7 662 aaKnown RBP13.61□□□□□ -0.23
CSPG4-201ENST00000308508 MAD2L1BPQ15013 274 aaPredicted RBP13.61□□□□□ -0.23
CSPG4-201ENST00000308508 NCEH1Q6PIU2 408 aa13.61□□□□□ -0.23
CSPG4-201ENST00000308508 BANPQ8N9N5 519 aa13.61□□□□□ -0.23
CSPG4-201ENST00000308508 GLIS3Q8NEA6 775 aa13.61□□□□□ -0.23
CSPG4-201ENST00000308508 TCEAL3Q969E4 200 aa13.61□□□□□ -0.23
CSPG4-201ENST00000308508 DNAJC19Q96DA6 116 aa13.61□□□□□ -0.23
CSPG4-201ENST00000308508 MKKSQ9NPJ1 570 aaPredicted RBP13.61□□□□□ -0.23
CSPG4-201ENST00000308508 ADORA2AP29274 412 aa13.61□□□□□ -0.23
CSPG4-201ENST00000308508 SPIN3Q5JUX0 258 aa13.61□□□□□ -0.23
CSPG4-201ENST00000308508 MSANTD2Q6P1R3 559 aa13.61□□□□□ -0.23
CSPG4-201ENST00000308508 AURKBQ96GD4 344 aaPredicted RBP13.61□□□□□ -0.23
CSPG4-201ENST00000308508 PHPT1Q9NRX4 125 aaPredicted RBP13.61□□□□□ -0.23
CSPG4-201ENST00000308508 PLEKHA6Q9Y2H5 1048 aa13.61□□□□□ -0.23
CSPG4-201ENST00000308508 DERAQ9Y315 318 aa13.61□□□□□ -0.23
CSPG4-201ENST00000308508 CEMIPQ8WUJ3 1361 aa13.61□□□□□ -0.23
CSPG4-201ENST00000308508 AURKAO14965 403 aa13.61□□□□□ -0.23
CSPG4-201ENST00000308508 SEC23BQ15437 767 aa13.61□□□□□ -0.23
CSPG4-201ENST00000308508 HID1Q8IV36 788 aa13.61□□□□□ -0.23
CSPG4-201ENST00000308508 ZNF565Q8N9K5 539 aa13.61□□□□□ -0.23
CSPG4-201ENST00000308508 PREBQ9HCU5 417 aa13.61□□□□□ -0.23
CSPG4-201ENST00000308508 ACSS2Q9NR19 701 aa13.61□□□□□ -0.23
CSPG4-201ENST00000308508 PCDHGA11Q9Y5H2 935 aa13.61□□□□□ -0.23
CSPG4-201ENST00000308508 GRIN3BO60391 1043 aa13.61□□□□□ -0.23
CSPG4-201ENST00000308508 TLR5O60602 858 aa13.61□□□□□ -0.23
CSPG4-201ENST00000308508 MAPK3P27361 379 aaPredicted RBP13.61□□□□□ -0.23
Retrieved 100 of 20,778 RNA–protein pairs in 23.9 ms