RNA–Protein interactions for RNA: ENST00000304636.7

COL3A1-201, Transcript of collagen type III alpha 1 chain, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene COL3A1, Length 5,543 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL3A1-201ENST00000304636 RNF6Q9Y252 685 aa12.6□□□□□ -0.39
COL3A1-201ENST00000304636 SPIN1Q9Y657 262 aaPredicted RBP12.6□□□□□ -0.39
COL3A1-201ENST00000304636 OR51F1A6NGY5 319 aa12.6□□□□□ -0.39
COL3A1-201ENST00000304636 BHMG1C9JSJ3 638 aaPredicted RBP12.6□□□□□ -0.39
COL3A1-201ENST00000304636 RASAL1O95294 804 aa12.6□□□□□ -0.39
COL3A1-201ENST00000304636 IFNA16P05015 189 aa12.6□□□□□ -0.39
COL3A1-201ENST00000304636 F7P08709 466 aaPredicted RBP12.6□□□□□ -0.39
COL3A1-201ENST00000304636 CSTF2P33240 577 aaKnown RBP eCLIP12.6□□□□□ -0.39
COL3A1-201ENST00000304636 TARDBPQ13148 414 aaKnown RBP eCLIP12.6□□□□□ -0.39
COL3A1-201ENST00000304636 SMCO1Q147U7 214 aa12.6□□□□□ -0.39
COL3A1-201ENST00000304636 SPRED3Q2MJR0 410 aa12.6□□□□□ -0.39
COL3A1-201ENST00000304636 RTL4Q6ZR62 310 aa12.6□□□□□ -0.39
COL3A1-201ENST00000304636 OR13C4Q8NGS5 318 aa12.6□□□□□ -0.39
COL3A1-201ENST00000304636 SLC35F5Q8WV83 523 aa12.6□□□□□ -0.39
COL3A1-201ENST00000304636 EXOSC8Q96B26 276 aaKnown RBP12.6□□□□□ -0.39
COL3A1-201ENST00000304636 MMP27Q9H306 513 aa12.6□□□□□ -0.39
COL3A1-201ENST00000304636 MRM3Q9HC36 420 aaKnown RBP12.6□□□□□ -0.39
COL3A1-201ENST00000304636 SLC35C2Q9NQQ7 365 aa12.6□□□□□ -0.39
COL3A1-201ENST00000304636 CCM2LQ9NUG4 571 aaPredicted RBP12.6□□□□□ -0.39
COL3A1-201ENST00000304636 MALT1Q9UDY8 824 aa12.6□□□□□ -0.39
COL3A1-201ENST00000304636 PSAT1Q9Y617 370 aa12.6□□□□□ -0.39
COL3A1-201ENST00000304636 ISM1B1AKI9 464 aa12.6□□□□□ -0.39
COL3A1-201ENST00000304636 CCRL2O00421 344 aa12.6□□□□□ -0.39
COL3A1-201ENST00000304636 IRAK2O43187 625 aa12.6□□□□□ -0.39
COL3A1-201ENST00000304636 GSTT2BP0CG30 244 aa12.6□□□□□ -0.39
COL3A1-201ENST00000304636 SCARB2Q14108 478 aa12.6□□□□□ -0.39
COL3A1-201ENST00000304636 MPPE1Q53F39 396 aa12.6□□□□□ -0.39
COL3A1-201ENST00000304636 RABL3Q5HYI8 236 aa12.6□□□□□ -0.39
COL3A1-201ENST00000304636 FAM171BQ6P995 826 aa12.6□□□□□ -0.39
COL3A1-201ENST00000304636 GALNT12Q8IXK2 581 aa12.6□□□□□ -0.39
COL3A1-201ENST00000304636 OXR1Q8N573 874 aa12.6□□□□□ -0.39
COL3A1-201ENST00000304636 ATAD1Q8NBU5 361 aa12.6□□□□□ -0.39
COL3A1-201ENST00000304636 TTLL2Q9BWV7 592 aa12.6□□□□□ -0.39
COL3A1-201ENST00000304636 EQTNQ9NQ60 294 aa12.6□□□□□ -0.39
COL3A1-201ENST00000304636 CKLFQ9UBR5 152 aa12.6□□□□□ -0.39
COL3A1-201ENST00000304636 ILVBLA1L0T0 632 aa12.6□□□□□ -0.39
COL3A1-201ENST00000304636 RNASEH2AO75792 299 aaKnown RBP12.6□□□□□ -0.39
COL3A1-201ENST00000304636 PEPDP12955 493 aa12.6□□□□□ -0.39
COL3A1-201ENST00000304636 LAMP2P13473 410 aa12.6□□□□□ -0.39
COL3A1-201ENST00000304636 DGKQP52824 942 aa12.6□□□□□ -0.39
COL3A1-201ENST00000304636 ZNF45Q02386 682 aa12.6□□□□□ -0.39
COL3A1-201ENST00000304636 ZNF33AQ06730 810 aa12.6□□□□□ -0.39
COL3A1-201ENST00000304636 LINGO4Q6UY18 593 aa12.6□□□□□ -0.39
COL3A1-201ENST00000304636 CXorf40BQ96DE9 158 aa12.6□□□□□ -0.39
COL3A1-201ENST00000304636 SLC30A2Q9BRI3 323 aa12.6□□□□□ -0.39
COL3A1-201ENST00000304636 OR14I1A6ND48 311 aa12.6□□□□□ -0.39
COL3A1-201ENST00000304636 MID1O15344 667 aa12.6□□□□□ -0.39
COL3A1-201ENST00000304636 CREG1O75629 220 aa12.6□□□□□ -0.39
COL3A1-201ENST00000304636 SLC25A12O75746 678 aa12.6□□□□□ -0.39
COL3A1-201ENST00000304636 ACSL1P33121 698 aa12.6□□□□□ -0.39
COL3A1-201ENST00000304636 SYCE2Q6PIF2 218 aa12.6□□□□□ -0.39
COL3A1-201ENST00000304636 TAF8Q7Z7C8 310 aa12.6□□□□□ -0.39
COL3A1-201ENST00000304636 PLD6Q8N2A8 252 aaKnown RBP12.6□□□□□ -0.39
COL3A1-201ENST00000304636 TMEM74Q96NL1 305 aa12.6□□□□□ -0.39
COL3A1-201ENST00000304636 LPIN3Q9BQK8 851 aa12.6□□□□□ -0.39
COL3A1-201ENST00000304636 TTPALQ9BTX7 342 aa12.6□□□□□ -0.39
COL3A1-201ENST00000304636 MND1Q9BWT6 205 aa12.6□□□□□ -0.39
COL3A1-201ENST00000304636 NDOR1Q9UHB4 597 aa12.6□□□□□ -0.39
COL3A1-201ENST00000304636 ENGP17813 658 aa12.59□□□□□ -0.39
COL3A1-201ENST00000304636 HEPACAMQ14CZ8 416 aa12.59□□□□□ -0.39
COL3A1-201ENST00000304636 SIX1Q15475 284 aaPredicted RBP12.59□□□□□ -0.39
COL3A1-201ENST00000304636 MSANTD2Q6P1R3 559 aa12.59□□□□□ -0.39
COL3A1-201ENST00000304636 CDHR3Q6ZTQ4 885 aa12.59□□□□□ -0.39
COL3A1-201ENST00000304636 CACUL1Q86Y37 369 aa12.59□□□□□ -0.39
COL3A1-201ENST00000304636 TRUB1Q8WWH5 349 aaKnown RBP12.59□□□□□ -0.39
COL3A1-201ENST00000304636 ZNF599Q96NL3 588 aa12.59□□□□□ -0.39
COL3A1-201ENST00000304636 PEBP4Q96S96 227 aa12.59□□□□□ -0.39
COL3A1-201ENST00000304636 MNTQ99583 582 aa12.59□□□□□ -0.39
COL3A1-201ENST00000304636 OXCT2Q9BYC2 517 aaPredicted RBP12.59□□□□□ -0.39
COL3A1-201ENST00000304636 GPSM3Q9Y4H4 160 aa12.59□□□□□ -0.39
COL3A1-201ENST00000304636 A0A0X1KG70 313 aa12.59□□□□□ -0.39
COL3A1-201ENST00000304636 TBC1D3BA6NDS4 549 aa12.59□□□□□ -0.39
COL3A1-201ENST00000304636 TLR4O00206 839 aa12.59□□□□□ -0.39
COL3A1-201ENST00000304636 PQBP1O60828 265 aaKnown RBP12.59□□□□□ -0.39
COL3A1-201ENST00000304636 IFNA6P05013 189 aa12.59□□□□□ -0.39
COL3A1-201ENST00000304636 VBP1P61758 197 aa12.59□□□□□ -0.39
COL3A1-201ENST00000304636 CD83Q01151 205 aa12.59□□□□□ -0.39
COL3A1-201ENST00000304636 CIR1Q86X95 450 aaPredicted RBP12.59□□□□□ -0.39
COL3A1-201ENST00000304636 TMEM192Q8IY95 271 aa12.59□□□□□ -0.39
COL3A1-201ENST00000304636 PHC3Q8NDX5 983 aa12.59□□□□□ -0.39
COL3A1-201ENST00000304636 SRFBP1Q8NEF9 429 aaKnown RBP12.59□□□□□ -0.39
COL3A1-201ENST00000304636 KLHL6Q8WZ60 621 aa12.59□□□□□ -0.39
COL3A1-201ENST00000304636 MAPKAP1Q9BPZ7 522 aa12.59□□□□□ -0.39
COL3A1-201ENST00000304636 FAM83DQ9H4H8 585 aa12.59□□□□□ -0.39
COL3A1-201ENST00000304636 FLRT1Q9NZU1 646 aa12.59□□□□□ -0.39
COL3A1-201ENST00000304636 SLC2A6Q9UGQ3 507 aa12.59□□□□□ -0.39
COL3A1-201ENST00000304636 ZNF214Q9UL59 606 aaPredicted RBP12.59□□□□□ -0.39
COL3A1-201ENST00000304636 RIMBP3CA6NJZ7 1639 aa12.59□□□□□ -0.39
COL3A1-201ENST00000304636 RIMBP3BA6NNM3 1639 aa12.59□□□□□ -0.39
COL3A1-201ENST00000304636 RIMBP3Q9UFD9 1639 aa12.59□□□□□ -0.39
COL3A1-201ENST00000304636 CDK14O94921 469 aa12.59□□□□□ -0.39
COL3A1-201ENST00000304636 ALDOAP04075 364 aaKnown RBP12.59□□□□□ -0.39
COL3A1-201ENST00000304636 XKP51811 444 aa12.59□□□□□ -0.39
COL3A1-201ENST00000304636 CSTF1Q05048 431 aaKnown RBP12.59□□□□□ -0.39
COL3A1-201ENST00000304636 ALG11Q2TAA5 492 aa12.59□□□□□ -0.39
COL3A1-201ENST00000304636 ZNF678Q5SXM1 525 aa12.59□□□□□ -0.39
COL3A1-201ENST00000304636 KIAA1614Q5VZ46 1190 aa12.59□□□□□ -0.39
COL3A1-201ENST00000304636 BEND7Q8N7W2 519 aaPredicted RBP12.59□□□□□ -0.39
COL3A1-201ENST00000304636 MUS81Q96NY9 551 aa12.59□□□□□ -0.39
COL3A1-201ENST00000304636 DERL2Q9GZP9 239 aa12.59□□□□□ -0.39
Retrieved 100 of 20,778 RNA–protein pairs in 34.9 ms