RNA–Protein interactions for RNA: ENST00000297261.6

SHH-201, Transcript of sonic hedgehog, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SHH, Length 4,454 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHH-201ENST00000297261 FPGTO14772 594 aa15.06■□□□□ 0
SHH-201ENST00000297261 ITGB1P05556 798 aa15.06■□□□□ 0
SHH-201ENST00000297261 PDE12Q6L8Q7 609 aaKnown RBP15.06■□□□□ 0
SHH-201ENST00000297261 OR6K2Q8NGY2 324 aa15.06■□□□□ 0
SHH-201ENST00000297261 CNIH3Q8TBE1 160 aa15.06■□□□□ 0
SHH-201ENST00000297261 TCF25Q9BQ70 676 aa15.06■□□□□ 0
SHH-201ENST00000297261 MYO10Q9HD67 2058 aa15.06■□□□□ 0
SHH-201ENST00000297261 TTC24A2A3L6 582 aaPredicted RBP15.06■□□□□ 0
SHH-201ENST00000297261 CSF2P04141 144 aa15.06■□□□□ 0
SHH-201ENST00000297261 YES1P07947 543 aa15.06■□□□□ 0
SHH-201ENST00000297261 POLR2EP19388 210 aaKnown RBP15.06■□□□□ 0
SHH-201ENST00000297261 OPRL1P41146 370 aa15.06■□□□□ 0
SHH-201ENST00000297261 CLCN2P51788 898 aa15.06■□□□□ 0
SHH-201ENST00000297261 UGT2B15P54855 530 aa15.06■□□□□ 0
SHH-201ENST00000297261 PABPC1LQ4VXU2 614 aaKnown RBP15.06■□□□□ 0
SHH-201ENST00000297261 BICRALQ6AI39 1079 aa15.06■□□□□ 0
SHH-201ENST00000297261 TRMT11Q7Z4G4 463 aaKnown RBP15.06■□□□□ 0
SHH-201ENST00000297261 CMTR2Q8IYT2 770 aaKnown RBP15.06■□□□□ 0
SHH-201ENST00000297261 OR13C4Q8NGS5 318 aa15.06■□□□□ 0
SHH-201ENST00000297261 POP5Q969H6 163 aaKnown RBP15.06■□□□□ 0
SHH-201ENST00000297261 BEX2Q9BXY8 128 aa15.06■□□□□ 0
SHH-201ENST00000297261 NLNQ9BYT8 704 aa15.06■□□□□ 0
SHH-201ENST00000297261 SPG21Q9NZD8 308 aa15.06■□□□□ 0
SHH-201ENST00000297261 COMMD3Q9UBI1 195 aa15.06■□□□□ 0
SHH-201ENST00000297261 PTGDR2Q9Y5Y4 395 aa15.06■□□□□ 0
SHH-201ENST00000297261 ENPP3O14638 875 aa15.06■□□□□ 0
SHH-201ENST00000297261 B4GAT1O43505 415 aa15.06■□□□□ 0
SHH-201ENST00000297261 ADAMTS4O75173 837 aa15.06■□□□□ 0
SHH-201ENST00000297261 TRBC1P01850 177 aa15.06■□□□□ 0
SHH-201ENST00000297261 PSKH1P11801 424 aa15.06■□□□□ 0
SHH-201ENST00000297261 MAP2K4P45985 399 aa15.06■□□□□ 0
SHH-201ENST00000297261 CENPAP49450 140 aa15.06■□□□□ 0
SHH-201ENST00000297261 ANKDD1AQ495B1 522 aa15.06■□□□□ 0
SHH-201ENST00000297261 ART5Q96L15 291 aa15.06■□□□□ 0
SHH-201ENST00000297261 PHOX2BQ99453 314 aa15.06■□□□□ 0
SHH-201ENST00000297261 TMEM246Q9BRR3 403 aa15.06■□□□□ 0
SHH-201ENST00000297261 TMLHEQ9NVH6 421 aa15.06■□□□□ 0
SHH-201ENST00000297261 CFL2Q9Y281 166 aa15.06■□□□□ 0
SHH-201ENST00000297261 MCM3APO60318 1980 aa15.05■□□□□ 0
SHH-201ENST00000297261 KIAA1217Q5T5P2 1943 aa15.05■□□□□ 0
SHH-201ENST00000297261 KRBA1A5PL33 1030 aa15.05■□□□□ 0
SHH-201ENST00000297261 M0QX08 132 aa15.05■□□□□ 0
SHH-201ENST00000297261 STK16O75716 305 aa15.05■□□□□ 0
SHH-201ENST00000297261 WEE1P30291 646 aa15.05■□□□□ 0
SHH-201ENST00000297261 DGKEP52429 567 aa15.05■□□□□ 0
SHH-201ENST00000297261 ALKAL1Q6UXT8 129 aa15.05■□□□□ 0
SHH-201ENST00000297261 PXYLP1Q8TE99 480 aa15.05■□□□□ 0
SHH-201ENST00000297261 SIPA1Q96FS4 1042 aa15.05■□□□□ 0
SHH-201ENST00000297261 SORT1Q99523 831 aa15.05■□□□□ 0
SHH-201ENST00000297261 GINS4Q9BRT9 223 aa15.05■□□□□ 0
SHH-201ENST00000297261 MED28Q9H204 178 aa15.05■□□□□ 0
SHH-201ENST00000297261 PCDHB3Q9Y5E6 796 aa15.05■□□□□ 0
SHH-201ENST00000297261 ACOX3O15254 700 aa15.05■□□□□ -0
SHH-201ENST00000297261 ATE1O95260 518 aa15.05■□□□□ -0
SHH-201ENST00000297261 RHOQP17081 205 aa15.05■□□□□ -0
SHH-201ENST00000297261 ST8SIA6P61647 398 aa15.05■□□□□ -0
SHH-201ENST00000297261 NANOGP8Q6NSW7 305 aa15.05■□□□□ -0
SHH-201ENST00000297261 MACC1Q6ZN28 852 aa15.05■□□□□ -0
SHH-201ENST00000297261 PRR23CQ6ZRP0 262 aa15.05■□□□□ -0
SHH-201ENST00000297261 OR8H3Q8N146 312 aa15.05■□□□□ -0
SHH-201ENST00000297261 RTL3Q8N8U3 475 aaKnown RBP15.05■□□□□ -0
SHH-201ENST00000297261 DHRS4Q9BTZ2 278 aa15.05■□□□□ -0
SHH-201ENST00000297261 NANOGQ9H9S0 305 aa15.05■□□□□ -0
SHH-201ENST00000297261 FAM72CH0Y354 149 aa15.05■□□□□ -0
SHH-201ENST00000297261 KLHL18O94889 574 aa15.05■□□□□ -0
SHH-201ENST00000297261 SLC25A14O95258 325 aaPredicted RBP15.05■□□□□ -0
SHH-201ENST00000297261 PGRP06401 933 aa15.05■□□□□ -0
SHH-201ENST00000297261 CCL5P13501 91 aa15.05■□□□□ -0
SHH-201ENST00000297261 GLDCP23378 1020 aa15.05■□□□□ -0
SHH-201ENST00000297261 CASP9P55211 416 aa15.05■□□□□ -0
SHH-201ENST00000297261 GTF2H2Q13888 395 aa15.05■□□□□ -0
SHH-201ENST00000297261 GRB7Q14451 532 aa15.05■□□□□ -0
SHH-201ENST00000297261 FAM72AQ5TYM5 149 aa15.05■□□□□ -0
SHH-201ENST00000297261 FAM72DQ6L9T8 149 aa15.05■□□□□ -0
SHH-201ENST00000297261 GTF2H2CQ6P1K8 395 aa15.05■□□□□ -0
SHH-201ENST00000297261 FAM72BQ86X60 149 aa15.05■□□□□ -0
SHH-201ENST00000297261 ASCC1Q8N9N2 400 aaKnown RBP15.05■□□□□ -0
SHH-201ENST00000297261 SIDT2Q8NBJ9 832 aaKnown RBP15.05■□□□□ -0
SHH-201ENST00000297261 VANGL1Q8TAA9 524 aaPredicted RBP15.05■□□□□ -0
SHH-201ENST00000297261 FCGR1BQ92637 280 aa15.05■□□□□ -0
SHH-201ENST00000297261 PSMG2Q969U7 264 aa15.05■□□□□ -0
SHH-201ENST00000297261 ANKRD60Q9BZ19 345 aa15.05■□□□□ -0
SHH-201ENST00000297261 AGO1Q9UL18 857 aaKnown RBP15.05■□□□□ -0
SHH-201ENST00000297261 ANGPT4Q9Y264 503 aa15.05■□□□□ -0
SHH-201ENST00000297261 PCDHGC4Q9Y5F7 938 aa15.05■□□□□ -0
SHH-201ENST00000297261 RASAL1O95294 804 aa15.04■□□□□ -0
SHH-201ENST00000297261 NDST3O95803 873 aa15.04■□□□□ -0
SHH-201ENST00000297261 CPOXP36551 454 aa15.04■□□□□ -0
SHH-201ENST00000297261 LCN1P1Q5VSP4 162 aa15.04■□□□□ -0
SHH-201ENST00000297261 CCBE1Q6UXH8 406 aaPredicted RBP15.04■□□□□ -0
SHH-201ENST00000297261 TBC1D19Q8N5T2 526 aa15.04■□□□□ -0
SHH-201ENST00000297261 ITPKCQ96DU7 683 aa15.04■□□□□ -0
SHH-201ENST00000297261 KCNC2Q96PR1 638 aa15.04■□□□□ -0
SHH-201ENST00000297261 FCRL5Q96RD9 977 aa15.04■□□□□ -0
SHH-201ENST00000297261 POLR2J2Q9GZM3 115 aaKnown RBP15.04■□□□□ -0
SHH-201ENST00000297261 C1orf109Q9NX04 203 aa15.04■□□□□ -0
SHH-201ENST00000297261 TCAF2A6NFQ2 919 aa15.04■□□□□ -0
SHH-201ENST00000297261 SLC35E2BP0CK96 405 aa15.04■□□□□ -0
SHH-201ENST00000297261 SNAPC1Q16533 368 aa15.04■□□□□ -0
SHH-201ENST00000297261 USP39Q53GS9 565 aaKnown RBP15.04■□□□□ -0
Retrieved 100 of 20,778 RNA–protein pairs in 21.3 ms