RNA–Protein interactions for RNA: ENST00000263274.11

LIG1-201, Transcript of DNA ligase 1, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene LIG1, Length 3,384 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-201ENST00000263274 CCND3P30281 292 aaPredicted RBP12.38□□□□□ -0.43
LIG1-201ENST00000263274 BCAP31P51572 246 aa12.38□□□□□ -0.43
LIG1-201ENST00000263274 TMBIM6P55061 237 aa12.38□□□□□ -0.43
LIG1-201ENST00000263274 BOP1Q14137 746 aaKnown RBP12.38□□□□□ -0.43
LIG1-201ENST00000263274 DSC3Q14574 896 aa12.38□□□□□ -0.43
LIG1-201ENST00000263274 ZNF362Q5T0B9 420 aaPredicted RBP12.38□□□□□ -0.43
LIG1-201ENST00000263274 HECTD3Q5T447 861 aa12.38□□□□□ -0.43
LIG1-201ENST00000263274 TAS1R1Q7RTX1 841 aa12.38□□□□□ -0.43
LIG1-201ENST00000263274 ZDHHC21Q8IVQ6 265 aa12.38□□□□□ -0.43
LIG1-201ENST00000263274 RIMKLAQ8IXN7 391 aa12.38□□□□□ -0.43
LIG1-201ENST00000263274 TAMM41Q96BW9 452 aa12.38□□□□□ -0.43
LIG1-201ENST00000263274 EGLN2Q96KS0 407 aa12.38□□□□□ -0.43
LIG1-201ENST00000263274 SLC6A13Q9NSD5 602 aa12.38□□□□□ -0.43
LIG1-201ENST00000263274 PCDHB14Q9Y5E9 798 aa12.38□□□□□ -0.43
LIG1-201ENST00000263274 EVPLLA8MZ36 301 aa12.37□□□□□ -0.43
LIG1-201ENST00000263274 ADAM12O43184 909 aa12.37□□□□□ -0.43
LIG1-201ENST00000263274 FAM20BO75063 409 aa12.37□□□□□ -0.43
LIG1-201ENST00000263274 AOC2O75106 756 aa12.37□□□□□ -0.43
LIG1-201ENST00000263274 ZNF12P17014 697 aa12.37□□□□□ -0.43
LIG1-201ENST00000263274 JAK1P23458 1154 aa12.37□□□□□ -0.43
LIG1-201ENST00000263274 ITPKAP23677 461 aa12.37□□□□□ -0.43
LIG1-201ENST00000263274 PCYT1AP49585 367 aa12.37□□□□□ -0.43
LIG1-201ENST00000263274 CACNG1Q06432 222 aa12.37□□□□□ -0.43
LIG1-201ENST00000263274 PLD3Q8IV08 490 aa12.37□□□□□ -0.43
LIG1-201ENST00000263274 ADGRG2Q8IZP9 1017 aa12.37□□□□□ -0.43
LIG1-201ENST00000263274 ADAMTS16Q8TE57 1224 aa12.37□□□□□ -0.43
LIG1-201ENST00000263274 SH3GL1Q99961 368 aa12.37□□□□□ -0.43
LIG1-201ENST00000263274 YTHDF1Q9BYJ9 559 aaKnown RBP12.37□□□□□ -0.43
LIG1-201ENST00000263274 ATG10Q9H0Y0 220 aa12.37□□□□□ -0.43
LIG1-201ENST00000263274 EPS8L2Q9H6S3 715 aa12.37□□□□□ -0.43
LIG1-201ENST00000263274 ZFYVE1Q9HBF4 777 aa12.37□□□□□ -0.43
LIG1-201ENST00000263274 PDFQ9HBH1 243 aa12.37□□□□□ -0.43
LIG1-201ENST00000263274 ELOVL2Q9NXB9 296 aa12.37□□□□□ -0.43
LIG1-201ENST00000263274 AKAP8LQ9ULX6 646 aaKnown RBP eCLIP12.37□□□□□ -0.432e-6■□□□□ 8.3
LIG1-201ENST00000263274 GMPPBQ9Y5P6 360 aa12.37□□□□□ -0.43
LIG1-201ENST00000263274 H0Y858 1186 aa12.37□□□□□ -0.43
LIG1-201ENST00000263274 SLC1A7O00341 560 aa12.37□□□□□ -0.43
LIG1-201ENST00000263274 RFXANKO14593 260 aa12.37□□□□□ -0.43
LIG1-201ENST00000263274 DGKAP23743 735 aa12.37□□□□□ -0.43
LIG1-201ENST00000263274 DCTP40126 519 aa12.37□□□□□ -0.43
LIG1-201ENST00000263274 SMN1Q16637 294 aaKnown RBP12.37□□□□□ -0.43
LIG1-201ENST00000263274 SYT16Q17RD7 645 aa12.37□□□□□ -0.43
LIG1-201ENST00000263274 RBM48Q5RL73 367 aaKnown RBP12.37□□□□□ -0.43
LIG1-201ENST00000263274 DHRS4L2Q6PKH6 230 aa12.37□□□□□ -0.43
LIG1-201ENST00000263274 SUSD1Q6UWL2 747 aa12.37□□□□□ -0.43
LIG1-201ENST00000263274 TPGS1Q6ZTW0 290 aa12.37□□□□□ -0.43
LIG1-201ENST00000263274 USP51Q70EK9 711 aa12.37□□□□□ -0.43
LIG1-201ENST00000263274 SOCS4Q8WXH5 440 aa12.37□□□□□ -0.43
LIG1-201ENST00000263274 WBP2Q969T9 261 aa12.37□□□□□ -0.43
LIG1-201ENST00000263274 RHNO1Q9BSD3 238 aa12.37□□□□□ -0.43
LIG1-201ENST00000263274 KLHL25Q9H0H3 589 aa12.37□□□□□ -0.43
LIG1-201ENST00000263274 TLR9Q9NR96 1032 aa12.37□□□□□ -0.43
LIG1-201ENST00000263274 SCN3BQ9NY72 215 aa12.37□□□□□ -0.43
LIG1-201ENST00000263274 PCDHB7Q9Y5E2 793 aa12.37□□□□□ -0.43
LIG1-201ENST00000263274 GPC6Q9Y625 555 aaPredicted RBP12.37□□□□□ -0.43
LIG1-201ENST00000263274 CLDN25C9JDP6 229 aa12.36□□□□□ -0.43
LIG1-201ENST00000263274 AGRPO00253 132 aa12.36□□□□□ -0.43
LIG1-201ENST00000263274 ABCB1P08183 1280 aaPredicted RBP12.36□□□□□ -0.43
LIG1-201ENST00000263274 CLK1P49759 484 aaKnown RBP12.36□□□□□ -0.43
LIG1-201ENST00000263274 TRAF3Q13114 568 aa12.36□□□□□ -0.43
LIG1-201ENST00000263274 AQP6Q13520 282 aa12.36□□□□□ -0.43
LIG1-201ENST00000263274 NPTX1Q15818 432 aa12.36□□□□□ -0.43
LIG1-201ENST00000263274 XAF1Q6GPH4 301 aa12.36□□□□□ -0.43
LIG1-201ENST00000263274 OR4F3Q6IEY1 312 aa12.36□□□□□ -0.43
LIG1-201ENST00000263274 FUT10Q6P4F1 479 aa12.36□□□□□ -0.43
LIG1-201ENST00000263274 SBSNQ6UWP8 590 aa12.36□□□□□ -0.43
LIG1-201ENST00000263274 IQCF2Q8IXL9 164 aa12.36□□□□□ -0.43
LIG1-201ENST00000263274 HS6ST3Q8IZP7 471 aa12.36□□□□□ -0.43
LIG1-201ENST00000263274 STK40Q8N2I9 435 aa12.36□□□□□ -0.43
LIG1-201ENST00000263274 TMEM132CQ8N3T6 1108 aa12.36□□□□□ -0.43
LIG1-201ENST00000263274 PAPD5Q8NDF8 572 aaKnown RBP12.36□□□□□ -0.43
LIG1-201ENST00000263274 UBE2FQ969M7 185 aa12.36□□□□□ -0.43
LIG1-201ENST00000263274 BARD1Q99728 777 aaKnown RBP12.36□□□□□ -0.43
LIG1-201ENST00000263274 OSBPL10Q9BXB5 764 aa12.36□□□□□ -0.43
LIG1-201ENST00000263274 BBS2Q9BXC9 721 aa12.36□□□□□ -0.43
LIG1-201ENST00000263274 SLC25A37Q9NYZ2 338 aa12.36□□□□□ -0.43
LIG1-201ENST00000263274 TMEM9Q9P0T7 183 aa12.36□□□□□ -0.43
LIG1-201ENST00000263274 MTRRQ9UBK8 725 aa12.36□□□□□ -0.43
LIG1-201ENST00000263274 CDH7Q9ULB5 785 aa12.36□□□□□ -0.43
LIG1-201ENST00000263274 COCHO43405 550 aa12.36□□□□□ -0.43
LIG1-201ENST00000263274 STK16O75716 305 aa12.36□□□□□ -0.43
LIG1-201ENST00000263274 KRT6AP02538 564 aa12.36□□□□□ -0.43
LIG1-201ENST00000263274 KRT6BP04259 564 aa12.36□□□□□ -0.43
LIG1-201ENST00000263274 BCKDHAP12694 445 aa12.36□□□□□ -0.43
LIG1-201ENST00000263274 KRT6CP48668 564 aa12.36□□□□□ -0.43
LIG1-201ENST00000263274 RPS14P62263 151 aaKnown RBP12.36□□□□□ -0.43
LIG1-201ENST00000263274 SF1Q15637 639 aaKnown RBP12.36□□□□□ -0.43
LIG1-201ENST00000263274 INAQ16352 499 aa12.36□□□□□ -0.43
LIG1-201ENST00000263274 PUS10Q3MIT2 529 aaKnown RBP12.36□□□□□ -0.43
LIG1-201ENST00000263274 AHSA2Q719I0 299 aa12.36□□□□□ -0.43
LIG1-201ENST00000263274 PAGE2Q7Z2X7 111 aa12.36□□□□□ -0.43
LIG1-201ENST00000263274 ZNF548Q8NEK5 533 aaPredicted RBP12.36□□□□□ -0.43
LIG1-201ENST00000263274 PSMA8Q8TAA3 256 aa12.36□□□□□ -0.43
LIG1-201ENST00000263274 ELMO1Q92556 727 aa12.36□□□□□ -0.43
LIG1-201ENST00000263274 HDAC2Q92769 488 aaKnown RBP12.36□□□□□ -0.43
LIG1-201ENST00000263274 HMG20AQ9NP66 347 aa12.36□□□□□ -0.43
LIG1-201ENST00000263274 HEBP1Q9NRV9 189 aa12.36□□□□□ -0.43
LIG1-201ENST00000263274 TRPM5Q9NZQ8 1165 aa12.36□□□□□ -0.43
LIG1-201ENST00000263274 PDP1Q9P0J1 537 aaPredicted RBP12.36□□□□□ -0.43
LIG1-201ENST00000263274 DLGAP4Q9Y2H0 992 aa12.36□□□□□ -0.43
Retrieved 100 of 20,778 RNA–protein pairs in 43.2 ms