RNA–Protein interactions for RNA: ENST00000262803.9

UPF1-201, Transcript of UPF1, RNA helicase and ATPase, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene UPF1, Length 5,348 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-201ENST00000262803 SPIN4Q56A73 249 aa18.78■□□□□ 0.6
UPF1-201ENST00000262803 ARNTL2Q8WYA1 636 aa18.78■□□□□ 0.6
UPF1-201ENST00000262803 SLC29A3Q9BZD2 475 aa18.78■□□□□ 0.6
UPF1-201ENST00000262803 MOCS1Q9NZB8 636 aa18.78■□□□□ 0.6
UPF1-201ENST00000262803 TLL2Q9Y6L7 1015 aa18.78■□□□□ 0.6
UPF1-201ENST00000262803 ZNF879B4DU55 563 aa18.78■□□□□ 0.6
UPF1-201ENST00000262803 PITPNAQ00169 270 aa18.78■□□□□ 0.6
UPF1-201ENST00000262803 ZNF33AQ06730 810 aa18.78■□□□□ 0.6
UPF1-201ENST00000262803 ADNP2Q6IQ32 1131 aa18.78■□□□□ 0.6
UPF1-201ENST00000262803 FBXL18Q96ME1 805 aa18.78■□□□□ 0.6
UPF1-201ENST00000262803 SYT17Q9BSW7 474 aa18.78■□□□□ 0.6
UPF1-201ENST00000262803 TRPV5Q9NQA5 729 aa18.78■□□□□ 0.6
UPF1-201ENST00000262803 OAS3Q9Y6K5 1087 aaKnown RBP18.78■□□□□ 0.6
UPF1-201ENST00000262803 FAM234BA2RU67 622 aa18.77■□□□□ 0.6
UPF1-201ENST00000262803 NME6O75414 186 aaPredicted RBP18.77■□□□□ 0.6
UPF1-201ENST00000262803 ADH5P11766 374 aa18.77■□□□□ 0.6
UPF1-201ENST00000262803 C1QTNF8P60827 252 aa18.77■□□□□ 0.6
UPF1-201ENST00000262803 SNTA1Q13424 505 aa18.77■□□□□ 0.6
UPF1-201ENST00000262803 UBXN2BQ14CS0 331 aa18.77■□□□□ 0.6
UPF1-201ENST00000262803 ADGRF1Q5T601 910 aa18.77■□□□□ 0.6
UPF1-201ENST00000262803 ZNF776Q68DI1 518 aaPredicted RBP18.77■□□□□ 0.6
UPF1-201ENST00000262803 AMIGO1Q86WK6 493 aa18.77■□□□□ 0.6
UPF1-201ENST00000262803 GAL3ST4Q96RP7 486 aa18.77■□□□□ 0.6
UPF1-201ENST00000262803 ZNF536O15090 1300 aa18.77■□□□□ 0.6
UPF1-201ENST00000262803 NCK1P16333 377 aa18.77■□□□□ 0.6
UPF1-201ENST00000262803 GRIA1P42261 906 aa18.77■□□□□ 0.6
UPF1-201ENST00000262803 CHRNA4P43681 627 aa18.77■□□□□ 0.6
UPF1-201ENST00000262803 HERC3Q15034 1050 aa18.77■□□□□ 0.6
UPF1-201ENST00000262803 FRRS1Q6ZNA5 592 aa18.77■□□□□ 0.6
UPF1-201ENST00000262803 LAPTM4BQ86VI4 370 aa18.77■□□□□ 0.6
UPF1-201ENST00000262803 SH3RF2Q8TEC5 729 aa18.77■□□□□ 0.6
UPF1-201ENST00000262803 ESAMQ96AP7 390 aa18.77■□□□□ 0.6
UPF1-201ENST00000262803 SLC17A6Q9P2U8 582 aa18.77■□□□□ 0.6
UPF1-201ENST00000262803 CACNA1FO60840 1977 aa18.77■□□□□ 0.6
UPF1-201ENST00000262803 CSNK2A2P19784 350 aaPredicted RBP18.77■□□□□ 0.6
UPF1-201ENST00000262803 RBBP4Q09028 425 aa18.77■□□□□ 0.6
UPF1-201ENST00000262803 MAPK14Q16539 360 aa18.77■□□□□ 0.6
UPF1-201ENST00000262803 PITRM1Q5JRX3 1037 aa18.77■□□□□ 0.6
UPF1-201ENST00000262803 GKN2Q86XP6 184 aa18.77■□□□□ 0.6
UPF1-201ENST00000262803 SLC7A8Q9UHI5 535 aa18.77■□□□□ 0.6
UPF1-201ENST00000262803 YIPF1Q9Y548 306 aa18.77■□□□□ 0.6
UPF1-201ENST00000262803 GSTM3P21266 225 aa18.77■□□□□ 0.59
UPF1-201ENST00000262803 VIPR1P32241 457 aa18.77■□□□□ 0.59
UPF1-201ENST00000262803 SEC13P55735 322 aa18.77■□□□□ 0.59
UPF1-201ENST00000262803 ADGRE1Q14246 886 aa18.77■□□□□ 0.59
UPF1-201ENST00000262803 WDR45BQ5MNZ6 344 aa18.77■□□□□ 0.59
UPF1-201ENST00000262803 SLC30A6Q6NXT4 461 aa18.77■□□□□ 0.59
UPF1-201ENST00000262803 FAM129CQ86XR2 697 aa18.77■□□□□ 0.59
UPF1-201ENST00000262803 RGMAQ96B86 450 aa18.77■□□□□ 0.59
UPF1-201ENST00000262803 TRMT61BQ9BVS5 477 aaKnown RBP18.77■□□□□ 0.59
UPF1-201ENST00000262803 POLR3BQ9NW08 1133 aaPredicted RBP18.77■□□□□ 0.59
UPF1-201ENST00000262803 IQCJ-SCHIP1C9J366 451 aaPredicted RBP18.76■□□□□ 0.59
UPF1-201ENST00000262803 ZNF208O43345 1280 aa18.76■□□□□ 0.59
UPF1-201ENST00000262803 IRF9Q00978 393 aa18.76■□□□□ 0.59
UPF1-201ENST00000262803 C10orf62Q5T681 223 aaPredicted RBP18.76■□□□□ 0.59
UPF1-201ENST00000262803 SIX5Q8N196 739 aa18.76■□□□□ 0.59
UPF1-201ENST00000262803 CNTN3Q9P232 1028 aa18.76■□□□□ 0.59
UPF1-201ENST00000262803 TP73O15350 636 aa18.76■□□□□ 0.59
UPF1-201ENST00000262803 UTS2BQ765I0 119 aa18.76■□□□□ 0.59
UPF1-201ENST00000262803 DBF4BQ8NFT6 615 aa18.76■□□□□ 0.59
UPF1-201ENST00000262803 IPCEF1Q8WWN9 437 aaPredicted RBP18.76■□□□□ 0.59
UPF1-201ENST00000262803 CST11Q9H112 138 aa18.76■□□□□ 0.59
UPF1-201ENST00000262803 ABCB8Q9NUT2 735 aa18.76■□□□□ 0.59
UPF1-201ENST00000262803 MEMO1Q9Y316 297 aa18.76■□□□□ 0.59
UPF1-201ENST00000262803 TMED5Q9Y3A6 229 aa18.76■□□□□ 0.59
UPF1-201ENST00000262803 PEX16Q9Y5Y5 336 aa18.76■□□□□ 0.59
UPF1-201ENST00000262803 DGKBQ9Y6T7 804 aa18.76■□□□□ 0.59
UPF1-201ENST00000262803 HCN1O60741 890 aa18.76■□□□□ 0.59
UPF1-201ENST00000262803 TACSTD2P09758 323 aa18.76■□□□□ 0.59
UPF1-201ENST00000262803 ANXA8P13928 327 aa18.76■□□□□ 0.59
UPF1-201ENST00000262803 PRPS1L1P21108 318 aa18.76■□□□□ 0.59
UPF1-201ENST00000262803 PRKCZQ05513 592 aa18.76■□□□□ 0.59
UPF1-201ENST00000262803 SYPL2Q5VXT5 272 aa18.76■□□□□ 0.59
UPF1-201ENST00000262803 LRRTM4Q86VH4 590 aa18.76■□□□□ 0.59
UPF1-201ENST00000262803 SIDT2Q8NBJ9 832 aaKnown RBP18.76■□□□□ 0.59
UPF1-201ENST00000262803 OR10A6Q8NH74 314 aa18.76■□□□□ 0.59
UPF1-201ENST00000262803 THRSPQ92748 146 aa18.76■□□□□ 0.59
UPF1-201ENST00000262803 CXorf21Q9HAI6 301 aa18.76■□□□□ 0.59
UPF1-201ENST00000262803 NEUROD4Q9HD90 331 aa18.76■□□□□ 0.59
UPF1-201ENST00000262803 MON2Q7Z3U7 1717 aa18.76■□□□□ 0.59
UPF1-201ENST00000262803 PPP2R2BQ00005 443 aa18.76■□□□□ 0.59
UPF1-201ENST00000262803 PLEKHG4Q58EX7 1191 aa18.76■□□□□ 0.59
UPF1-201ENST00000262803 ZMIZ2Q8NF64 920 aa18.76■□□□□ 0.59
UPF1-201ENST00000262803 SLC13A3Q8WWT9 602 aa18.76■□□□□ 0.59
UPF1-201ENST00000262803 ING5Q8WYH8 240 aa18.76■□□□□ 0.59
UPF1-201ENST00000262803 CMTM7Q96FZ5 175 aa18.76■□□□□ 0.59
UPF1-201ENST00000262803 TWNKQ96RR1 684 aa18.76■□□□□ 0.59
UPF1-201ENST00000262803 DUSP26Q9BV47 211 aa18.76■□□□□ 0.59
UPF1-201ENST00000262803 TPK1Q9H3S4 243 aa18.76■□□□□ 0.59
UPF1-201ENST00000262803 SP140Q13342 867 aa18.76■□□□□ 0.59
UPF1-201ENST00000262803 PLET1Q6UQ28 207 aa18.76■□□□□ 0.59
UPF1-201ENST00000262803 OTUB2Q96DC9 234 aa18.76■□□□□ 0.59
UPF1-201ENST00000262803 CWF19L1Q69YN2 538 aaKnown RBP18.75■□□□□ 0.59
UPF1-201ENST00000262803 PDE12Q6L8Q7 609 aaKnown RBP18.75■□□□□ 0.59
UPF1-201ENST00000262803 ANKRD46Q86W74 232 aa18.75■□□□□ 0.59
UPF1-201ENST00000262803 ZNF317Q96PQ6 595 aaPredicted RBP18.75■□□□□ 0.59
UPF1-201ENST00000262803 CYP2S1Q96SQ9 504 aa18.75■□□□□ 0.59
UPF1-201ENST00000262803 CHMP1AQ9HD42 196 aaPredicted RBP18.75■□□□□ 0.59
UPF1-201ENST00000262803 SPATA7Q9P0W8 599 aa18.75■□□□□ 0.59
UPF1-201ENST00000262803 CXorf49A8MYA2 514 aaPredicted RBP18.75■□□□□ 0.59
Retrieved 100 of 20,778 RNA–protein pairs in 24.5 ms