RNA–Protein interactions for RNA: ENST00000640036.1

SCN1A-218, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

APPRIS ALT1 TSL 5 BASIC

Gene SCN1A, Length 8,131 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-218ENST00000640036 APTXQ7Z2E3 356 aaKnown RBP4.93□□□□□ -1.62
SCN1A-218ENST00000640036 CLEC4FQ8N1N0 589 aa4.93□□□□□ -1.62
SCN1A-218ENST00000640036 RDH11Q8TC12 318 aa4.93□□□□□ -1.62
SCN1A-218ENST00000640036 SPPL2AQ8TCT8 520 aa4.93□□□□□ -1.62
SCN1A-218ENST00000640036 GATAD2BQ8WXI9 593 aa4.93□□□□□ -1.62
SCN1A-218ENST00000640036 MAT2BQ9NZL9 334 aa4.93□□□□□ -1.62
SCN1A-218ENST00000640036 HMGXB4Q9UGU5 601 aa4.93□□□□□ -1.62
SCN1A-218ENST00000640036 ZNF180Q9UJW8 692 aa4.93□□□□□ -1.62
SCN1A-218ENST00000640036 BOKQ9UMX3 212 aaPredicted RBP4.93□□□□□ -1.62
SCN1A-218ENST00000640036 CORO2BQ9UQ03 480 aa4.93□□□□□ -1.62
SCN1A-218ENST00000640036 TSC22D4Q9Y3Q8 395 aa4.93□□□□□ -1.62
SCN1A-218ENST00000640036 H3BQF6 201 aa4.92□□□□□ -1.62
SCN1A-218ENST00000640036 ATXN7O15265 892 aaPredicted RBP4.92□□□□□ -1.62
SCN1A-218ENST00000640036 SLC7A4O43246 635 aa4.92□□□□□ -1.62
SCN1A-218ENST00000640036 IL9P15248 144 aa4.92□□□□□ -1.62
SCN1A-218ENST00000640036 HNF1AP20823 631 aa4.92□□□□□ -1.62
SCN1A-218ENST00000640036 PSMB4P28070 264 aa4.92□□□□□ -1.62
SCN1A-218ENST00000640036 BTN3A2P78410 334 aa4.92□□□□□ -1.62
SCN1A-218ENST00000640036 IQCCQ4KMZ1 466 aa4.92□□□□□ -1.62
SCN1A-218ENST00000640036 RTP2Q5QGT7 225 aa4.92□□□□□ -1.62
SCN1A-218ENST00000640036 FAM220AQ7Z4H9 259 aa4.92□□□□□ -1.62
SCN1A-218ENST00000640036 CENPLQ8N0S6 344 aaPredicted RBP4.92□□□□□ -1.62
SCN1A-218ENST00000640036 SLC43A3Q8NBI5 491 aa4.92□□□□□ -1.62
SCN1A-218ENST00000640036 TRPV3Q8NET8 790 aa4.92□□□□□ -1.62
SCN1A-218ENST00000640036 ZFR2Q9UPR6 939 aaKnown RBP4.92□□□□□ -1.62
SCN1A-218ENST00000640036 CCDC187A0A096LP49 1063 aa4.92□□□□□ -1.62
SCN1A-218ENST00000640036 ZNF840PA6NDX5 716 aa4.92□□□□□ -1.62
SCN1A-218ENST00000640036 LEFTY1O75610 366 aa4.92□□□□□ -1.62
SCN1A-218ENST00000640036 RECQL5O94762 991 aaPredicted RBP4.92□□□□□ -1.62
SCN1A-218ENST00000640036 CRYABP02511 175 aaKnown RBP4.92□□□□□ -1.62
SCN1A-218ENST00000640036 EDN1P05305 212 aa4.92□□□□□ -1.62
SCN1A-218ENST00000640036 CLUP10909 449 aa4.92□□□□□ -1.62
SCN1A-218ENST00000640036 FCGR1AP12314 374 aa4.92□□□□□ -1.62
SCN1A-218ENST00000640036 ANPEPP15144 967 aa4.92□□□□□ -1.62
SCN1A-218ENST00000640036 CDC25BP30305 580 aa4.92□□□□□ -1.62
SCN1A-218ENST00000640036 BMP8BP34820 402 aa4.92□□□□□ -1.62
SCN1A-218ENST00000640036 SRP14P37108 136 aaKnown RBP4.92□□□□□ -1.62
SCN1A-218ENST00000640036 RPS6KA3P51812 740 aa4.92□□□□□ -1.62
SCN1A-218ENST00000640036 RAD23BP54727 409 aa4.92□□□□□ -1.62
SCN1A-218ENST00000640036 SMIM11AP58511 58 aa4.92□□□□□ -1.62
SCN1A-218ENST00000640036 SRP54P61011 504 aaKnown RBP4.92□□□□□ -1.62
SCN1A-218ENST00000640036 CYP4F3Q08477 520 aa4.92□□□□□ -1.62
SCN1A-218ENST00000640036 NIPAL4Q0D2K0 466 aa4.92□□□□□ -1.62
SCN1A-218ENST00000640036 NR1D2Q14995 579 aa4.92□□□□□ -1.62
SCN1A-218ENST00000640036 RUNDC3AQ59EK9 446 aa4.92□□□□□ -1.62
SCN1A-218ENST00000640036 TMEM234Q8WY98 164 aa4.92□□□□□ -1.62
SCN1A-218ENST00000640036 EPB41L4BQ9H329 900 aa4.92□□□□□ -1.62
SCN1A-218ENST00000640036 EURLQ9NYK6 297 aa4.92□□□□□ -1.62
SCN1A-218ENST00000640036 ACTL7BQ9Y614 415 aa4.92□□□□□ -1.62
SCN1A-218ENST00000640036 A0A1W2PQJ5 194 aa4.92□□□□□ -1.62
SCN1A-218ENST00000640036 HIDE1A8MVS5 230 aa4.92□□□□□ -1.62
SCN1A-218ENST00000640036 APOC4-APOC2K7ER74 178 aa4.92□□□□□ -1.62
SCN1A-218ENST00000640036 AKAP10O43572 662 aa4.92□□□□□ -1.62
SCN1A-218ENST00000640036 GLSO94925 669 aaPredicted RBP4.92□□□□□ -1.62
SCN1A-218ENST00000640036 APOC2P02655 101 aa4.92□□□□□ -1.62
SCN1A-218ENST00000640036 CCNCP24863 283 aa4.92□□□□□ -1.62
SCN1A-218ENST00000640036 MSX1P28360 303 aa4.92□□□□□ -1.62
SCN1A-218ENST00000640036 MAGEA4P43358 317 aa4.92□□□□□ -1.62
SCN1A-218ENST00000640036 RAB25P57735 213 aa4.92□□□□□ -1.62
SCN1A-218ENST00000640036 RPL26P61254 145 aaKnown RBP4.92□□□□□ -1.62
SCN1A-218ENST00000640036 MRPS35P82673 323 aaKnown RBP4.92□□□□□ -1.62
SCN1A-218ENST00000640036 RRP1BQ14684 758 aaKnown RBP4.92□□□□□ -1.62
SCN1A-218ENST00000640036 DEFB109BQ30KR1 87 aa4.92□□□□□ -1.62
SCN1A-218ENST00000640036 ESCO2Q56NI9 601 aa4.92□□□□□ -1.62
SCN1A-218ENST00000640036 C1orf189Q5VU69 101 aa4.92□□□□□ -1.62
SCN1A-218ENST00000640036 TXNDC11Q6PKC3 985 aa4.92□□□□□ -1.62
SCN1A-218ENST00000640036 C6orf120Q7Z4R8 191 aa4.92□□□□□ -1.62
SCN1A-218ENST00000640036 DCUN1D3Q8IWE4 304 aa4.92□□□□□ -1.62
SCN1A-218ENST00000640036 SMYD1Q8NB12 490 aa4.92□□□□□ -1.62
SCN1A-218ENST00000640036 TRPC4APQ8TEL6 797 aa4.92□□□□□ -1.62
SCN1A-218ENST00000640036 ART4Q93070 314 aa4.92□□□□□ -1.62
SCN1A-218ENST00000640036 FZD3Q9NPG1 666 aa4.92□□□□□ -1.62
SCN1A-218ENST00000640036 PCDH12Q9NPG4 1184 aa4.92□□□□□ -1.62
SCN1A-218ENST00000640036 ZDHHC3Q9NYG2 299 aa4.92□□□□□ -1.62
SCN1A-218ENST00000640036 PCYOX1Q9UHG3 505 aa4.92□□□□□ -1.62
SCN1A-218ENST00000640036 ADGRE2Q9UHX3 823 aa4.92□□□□□ -1.62
SCN1A-218ENST00000640036 FBXW11Q9UKB1 542 aa4.92□□□□□ -1.62
SCN1A-218ENST00000640036 RPL26L1Q9UNX3 145 aaKnown RBP4.92□□□□□ -1.62
SCN1A-218ENST00000640036 MTF2Q9Y483 593 aaPredicted RBP4.92□□□□□ -1.62
SCN1A-218ENST00000640036 C5P01031 1676 aa4.92□□□□□ -1.62
SCN1A-218ENST00000640036 EEF1E1-BLOC1S5C9J1V9 151 aa4.92□□□□□ -1.62
SCN1A-218ENST00000640036 DCLK1O15075 740 aa4.92□□□□□ -1.62
SCN1A-218ENST00000640036 EEF1E1O43324 174 aaKnown RBP4.92□□□□□ -1.62
SCN1A-218ENST00000640036 S100A6P06703 90 aa4.92□□□□□ -1.62
SCN1A-218ENST00000640036 FOXN2P32314 431 aa4.92□□□□□ -1.62
SCN1A-218ENST00000640036 PEX19P40855 299 aa4.92□□□□□ -1.62
SCN1A-218ENST00000640036 ASMTP46597 345 aa4.92□□□□□ -1.62
SCN1A-218ENST00000640036 VSX2P58304 361 aaPredicted RBP4.92□□□□□ -1.62
SCN1A-218ENST00000640036 FAM189A2Q15884 450 aa4.92□□□□□ -1.62
SCN1A-218ENST00000640036 CPSF6Q16630 551 aaKnown RBP eCLIP4.92□□□□□ -1.62
SCN1A-218ENST00000640036 TOR1AIP1Q5JTV8 583 aa4.92□□□□□ -1.62
SCN1A-218ENST00000640036 FAM91A1Q658Y4 838 aa4.92□□□□□ -1.62
SCN1A-218ENST00000640036 WDR93Q6P2C0 686 aa4.92□□□□□ -1.62
SCN1A-218ENST00000640036 ISLR2Q6UXK2 745 aa4.92□□□□□ -1.62
SCN1A-218ENST00000640036 SERPINA9Q86WD7 417 aa4.92□□□□□ -1.62
SCN1A-218ENST00000640036 ZBTB2Q8N680 514 aa4.92□□□□□ -1.62
SCN1A-218ENST00000640036 ABHD5Q8WTS1 349 aa4.92□□□□□ -1.62
SCN1A-218ENST00000640036 NANOS1Q8WY41 292 aaKnown RBP4.92□□□□□ -1.62
SCN1A-218ENST00000640036 ZSWIM3Q96MP5 696 aa4.92□□□□□ -1.62
SCN1A-218ENST00000640036 CPNE1Q99829 537 aa4.92□□□□□ -1.62
Retrieved 100 of 20,778 RNA–protein pairs in 611.9 ms