RNA–Protein interactions for RNA: ENST00000637050.1

CLN3-254, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,684 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-254ENST00000637050 ABCF3Q9NUQ8 709 aa17.95■□□□□ 0.46
CLN3-254ENST00000637050 ZNF225Q9UK10 706 aa17.95■□□□□ 0.46
CLN3-254ENST00000637050 APOBEC2Q9Y235 224 aaKnown RBP17.95■□□□□ 0.46
CLN3-254ENST00000637050 INVSQ9Y283 1065 aa17.95■□□□□ 0.46
CLN3-254ENST00000637050 STK38LQ9Y2H1 464 aa17.95■□□□□ 0.46
CLN3-254ENST00000637050 PLEKHM1Q9Y4G2 1056 aa17.95■□□□□ 0.46
CLN3-254ENST00000637050 PLXND1Q9Y4D7 1925 aa17.95■□□□□ 0.46
CLN3-254ENST00000637050 ZFC3H1O60293 1989 aaKnown RBP17.95■□□□□ 0.46
CLN3-254ENST00000637050 MYO1CO00159 1063 aa17.94■□□□□ 0.46
CLN3-254ENST00000637050 OR7A17O14581 309 aa17.94■□□□□ 0.46
CLN3-254ENST00000637050 PRDX3P30048 256 aaKnown RBP17.94■□□□□ 0.46
CLN3-254ENST00000637050 PIK3CGP48736 1102 aa17.94■□□□□ 0.46
CLN3-254ENST00000637050 RBBP7Q16576 425 aa17.94■□□□□ 0.46
CLN3-254ENST00000637050 PTCHD3Q3KNS1 767 aa17.94■□□□□ 0.46
CLN3-254ENST00000637050 SLC9B1Q4ZJI4 515 aa17.94■□□□□ 0.46
CLN3-254ENST00000637050 KANK2Q63ZY3 851 aa17.94■□□□□ 0.46
CLN3-254ENST00000637050 CLEC6AQ6EIG7 209 aa17.94■□□□□ 0.46
CLN3-254ENST00000637050 FITM2Q8N6M3 262 aa17.94■□□□□ 0.46
CLN3-254ENST00000637050 OR52B6Q8NGF0 335 aa17.94■□□□□ 0.46
CLN3-254ENST00000637050 SNX19Q92543 992 aa17.94■□□□□ 0.46
CLN3-254ENST00000637050 TFGQ92734 400 aaPredicted RBP17.94■□□□□ 0.46
CLN3-254ENST00000637050 SKA1Q96BD8 255 aa17.94■□□□□ 0.46
CLN3-254ENST00000637050 NUF2Q9BZD4 464 aa17.94■□□□□ 0.46
CLN3-254ENST00000637050 IPPKQ9H8X2 491 aa17.94■□□□□ 0.46
CLN3-254ENST00000637050 STOX2Q9P2F5 926 aaPredicted RBP17.94■□□□□ 0.46
CLN3-254ENST00000637050 KLQ9UEF7 1012 aa17.94■□□□□ 0.46
CLN3-254ENST00000637050 PNMA8BQ9ULN7 279 aaPredicted RBP17.94■□□□□ 0.46
CLN3-254ENST00000637050 PSMD13Q9UNM6 376 aa17.94■□□□□ 0.46
CLN3-254ENST00000637050 KCNK6Q9Y257 313 aa17.94■□□□□ 0.46
CLN3-254ENST00000637050 TRPC5OSA6NMA1 111 aa17.93■□□□□ 0.46
CLN3-254ENST00000637050 IFRD1O00458 451 aaPredicted RBP17.93■□□□□ 0.46
CLN3-254ENST00000637050 AZIN1O14977 448 aa17.93■□□□□ 0.46
CLN3-254ENST00000637050 DIAPH2O60879 1101 aa17.93■□□□□ 0.46
CLN3-254ENST00000637050 SLC16A8O95907 504 aa17.93■□□□□ 0.46
CLN3-254ENST00000637050 OTCP00480 354 aa17.93■□□□□ 0.46
CLN3-254ENST00000637050 JUNP05412 331 aaKnown RBP17.93■□□□□ 0.46
CLN3-254ENST00000637050 SLC35G4P0C7Q5 338 aa17.93■□□□□ 0.46
CLN3-254ENST00000637050 CD27P26842 260 aa17.93■□□□□ 0.46
CLN3-254ENST00000637050 SERPINB3P29508 390 aa17.93■□□□□ 0.46
CLN3-254ENST00000637050 HOXA6P31267 233 aa17.93■□□□□ 0.46
CLN3-254ENST00000637050 CLCNKAP51800 687 aa17.93■□□□□ 0.46
CLN3-254ENST00000637050 SRP54P61011 504 aaKnown RBP17.93■□□□□ 0.46
CLN3-254ENST00000637050 PDCD2Q16342 344 aaPredicted RBP17.93■□□□□ 0.46
CLN3-254ENST00000637050 ALG11Q2TAA5 492 aa17.93■□□□□ 0.46
CLN3-254ENST00000637050 USP39Q53GS9 565 aaKnown RBP17.93■□□□□ 0.46
CLN3-254ENST00000637050 GPRIN3Q6ZVF9 776 aa17.93■□□□□ 0.46
CLN3-254ENST00000637050 KLHDC8AQ8IYD2 350 aa17.93■□□□□ 0.46
CLN3-254ENST00000637050 SLC22A18ASQ8N1D0 253 aa17.93■□□□□ 0.46
CLN3-254ENST00000637050 MAGEC3Q8TD91 643 aa17.93■□□□□ 0.46
CLN3-254ENST00000637050 CCT6BQ92526 530 aa17.93■□□□□ 0.46
CLN3-254ENST00000637050 TSACCQ96A04 125 aaPredicted RBP17.93■□□□□ 0.46
CLN3-254ENST00000637050 SPACA7Q96KW9 195 aa17.93■□□□□ 0.46
CLN3-254ENST00000637050 RILPQ96NA2 401 aa17.93■□□□□ 0.46
CLN3-254ENST00000637050 LRRC37BQ96QE4 947 aa17.93■□□□□ 0.46
CLN3-254ENST00000637050 OSGEPL1Q9H4B0 414 aa17.93■□□□□ 0.46
CLN3-254ENST00000637050 ASF1AQ9Y294 204 aa17.93■□□□□ 0.46
CLN3-254ENST00000637050 FIS1Q9Y3D6 152 aa17.93■□□□□ 0.46
CLN3-254ENST00000637050 ANGPTL3Q9Y5C1 460 aa17.93■□□□□ 0.46
CLN3-254ENST00000637050 ST14Q9Y5Y6 855 aa17.93■□□□□ 0.46
CLN3-254ENST00000637050 EPB42P16452 691 aa17.93■□□□□ 0.46
CLN3-254ENST00000637050 IDSP22304 550 aa17.93■□□□□ 0.46
CLN3-254ENST00000637050 RPL10P27635 214 aaKnown RBP17.93■□□□□ 0.46
CLN3-254ENST00000637050 INHBCP55103 352 aa17.93■□□□□ 0.46
CLN3-254ENST00000637050 FOXA1P55317 472 aa17.93■□□□□ 0.46
CLN3-254ENST00000637050 BTKQ06187 659 aa17.93■□□□□ 0.46
CLN3-254ENST00000637050 TRAF3Q13114 568 aa17.93■□□□□ 0.46
CLN3-254ENST00000637050 LRP8Q14114 963 aa17.93■□□□□ 0.46
CLN3-254ENST00000637050 PTK2BQ14289 1009 aa17.93■□□□□ 0.46
CLN3-254ENST00000637050 AGTRAPQ6RW13 159 aa17.93■□□□□ 0.46
CLN3-254ENST00000637050 SLC36A4Q6YBV0 504 aa17.93■□□□□ 0.46
CLN3-254ENST00000637050 MTDHQ86UE4 582 aaKnown RBP17.93■□□□□ 0.46
CLN3-254ENST00000637050 ALYREFQ86V81 257 aaKnown RBP17.93■□□□□ 0.46
CLN3-254ENST00000637050 OR9A1PQ8NGU1 263 aa17.93■□□□□ 0.46
CLN3-254ENST00000637050 WDR37Q9Y2I8 494 aa17.93■□□□□ 0.46
CLN3-254ENST00000637050 DNAJC15Q9Y5T4 150 aa17.93■□□□□ 0.46
CLN3-254ENST00000637050 SLCO1B1Q9Y6L6 691 aa17.93■□□□□ 0.46
CLN3-254ENST00000637050 DGKBQ9Y6T7 804 aa17.93■□□□□ 0.46
CLN3-254ENST00000637050 GIPC1O14908 333 aa17.92■□□□□ 0.46
CLN3-254ENST00000637050 WDR47O94967 919 aa17.92■□□□□ 0.46
CLN3-254ENST00000637050 RPN2P04844 631 aa17.92■□□□□ 0.46
CLN3-254ENST00000637050 EPORP19235 508 aa17.92■□□□□ 0.46
CLN3-254ENST00000637050 AOC1P19801 751 aa17.92■□□□□ 0.46
CLN3-254ENST00000637050 IMPA1P29218 277 aa17.92■□□□□ 0.46
CLN3-254ENST00000637050 ERVPABLB-1P60509 514 aa17.92■□□□□ 0.46
CLN3-254ENST00000637050 RPL6Q02878 288 aaKnown RBP17.92■□□□□ 0.46
CLN3-254ENST00000637050 LETMD1Q6P1Q0 360 aa17.92■□□□□ 0.46
CLN3-254ENST00000637050 DCUN1D3Q8IWE4 304 aa17.92■□□□□ 0.46
CLN3-254ENST00000637050 OR5AR1Q8NGP9 310 aa17.92■□□□□ 0.46
CLN3-254ENST00000637050 OR56A3Q8NH54 315 aa17.92■□□□□ 0.46
CLN3-254ENST00000637050 OR5K2Q8NHB8 316 aa17.92■□□□□ 0.46
CLN3-254ENST00000637050 MAELQ96JY0 434 aaKnown RBP17.92■□□□□ 0.46
CLN3-254ENST00000637050 SLC6A18Q96N87 628 aa17.92■□□□□ 0.46
CLN3-254ENST00000637050 KCNA7Q96RP8 456 aa17.92■□□□□ 0.46
CLN3-254ENST00000637050 NTMT1Q9BV86 223 aa17.92■□□□□ 0.46
CLN3-254ENST00000637050 ATG10Q9H0Y0 220 aa17.92■□□□□ 0.46
CLN3-254ENST00000637050 MYLK2Q9H1R3 596 aa17.92■□□□□ 0.46
CLN3-254ENST00000637050 WDR55Q9H6Y2 383 aaPredicted RBP17.92■□□□□ 0.46
CLN3-254ENST00000637050 MEAF6Q9HAF1 191 aa17.92■□□□□ 0.46
CLN3-254ENST00000637050 SPTY2D1-AS1A0A0U1RR47 76 aa17.91■□□□□ 0.46
CLN3-254ENST00000637050 SDHDO14521 159 aa17.91■□□□□ 0.46
Retrieved 100 of 20,778 RNA–protein pairs in 40.3 ms