RNA–Protein interactions for RNA: ENST00000629293.1

LINC00550-201, long intergenic non-protein coding RNA 550, humanhuman

TSL 1 (best) BASIC

Gene LINC00550, Length 3,434 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00550-201ENST00000629293 TCRBV7S3A2A0A539 114 aa4.78□□□□□ -1.64
LINC00550-201ENST00000629293 D6RAR5 112 aa4.78□□□□□ -1.64
LINC00550-201ENST00000629293 ZNF821O75541 412 aaPredicted RBP4.78□□□□□ -1.64
LINC00550-201ENST00000629293 TMCC1O94876 653 aa4.78□□□□□ -1.64
LINC00550-201ENST00000629293 POP4O95707 220 aaKnown RBP4.78□□□□□ -1.64
LINC00550-201ENST00000629293 PRKAR1AP10644 381 aa4.78□□□□□ -1.64
LINC00550-201ENST00000629293 EPHB2P29323 1055 aa4.78□□□□□ -1.64
LINC00550-201ENST00000629293 RPL34P49207 117 aaKnown RBP4.78□□□□□ -1.64
LINC00550-201ENST00000629293 BLKP51451 505 aa4.78□□□□□ -1.64
LINC00550-201ENST00000629293 HK3P52790 923 aa4.78□□□□□ -1.64
LINC00550-201ENST00000629293 PDX1P52945 283 aa4.78□□□□□ -1.64
LINC00550-201ENST00000629293 GEMIN4P57678 1058 aaKnown RBP4.78□□□□□ -1.64
LINC00550-201ENST00000629293 DYNLT1P63172 113 aa4.78□□□□□ -1.64
LINC00550-201ENST00000629293 TLE1Q04724 770 aa4.78□□□□□ -1.64
LINC00550-201ENST00000629293 DPYSL3Q14195 570 aa4.78□□□□□ -1.64
LINC00550-201ENST00000629293 ZNF267Q14586 743 aaPredicted RBP4.78□□□□□ -1.64
LINC00550-201ENST00000629293 KCNJ11Q14654 390 aa4.78□□□□□ -1.64
LINC00550-201ENST00000629293 EFTUD2Q15029 972 aaKnown RBP eCLIP4.78□□□□□ -1.64
LINC00550-201ENST00000629293 IRF4Q15306 451 aa4.78□□□□□ -1.64
LINC00550-201ENST00000629293 ZKSCAN8Q15776 578 aaPredicted RBP4.78□□□□□ -1.64
LINC00550-201ENST00000629293 SNCBQ16143 134 aa4.78□□□□□ -1.64
LINC00550-201ENST00000629293 MYLK3Q32MK0 819 aa4.78□□□□□ -1.64
LINC00550-201ENST00000629293 ARL13BQ3SXY8 428 aa4.78□□□□□ -1.64
LINC00550-201ENST00000629293 SLC25A52Q3SY17 297 aa4.78□□□□□ -1.64
LINC00550-201ENST00000629293 ZFYVE27Q5T4F4 411 aa4.78□□□□□ -1.64
LINC00550-201ENST00000629293 WLSQ5T9L3 541 aa4.78□□□□□ -1.64
LINC00550-201ENST00000629293 FAM129CQ86XR2 697 aa4.78□□□□□ -1.64
LINC00550-201ENST00000629293 AGGF1Q8N302 714 aaeCLIP4.78□□□□□ -1.64
LINC00550-201ENST00000629293 ZC3H8Q8N5P1 291 aaKnown RBP eCLIP4.78□□□□□ -1.64
LINC00550-201ENST00000629293 FITM2Q8N6M3 262 aa4.78□□□□□ -1.64
LINC00550-201ENST00000629293 CCDC63Q8NA47 563 aa4.78□□□□□ -1.64
LINC00550-201ENST00000629293 DCAKDQ8WVC6 231 aa4.78□□□□□ -1.64
LINC00550-201ENST00000629293 HSPBAP1Q96EW2 488 aa4.78□□□□□ -1.64
LINC00550-201ENST00000629293 TEKT5Q96M29 485 aa4.78□□□□□ -1.64
LINC00550-201ENST00000629293 CNPY3Q9BT09 278 aa4.78□□□□□ -1.64
LINC00550-201ENST00000629293 MAK16Q9BXY0 300 aaKnown RBP4.78□□□□□ -1.64
LINC00550-201ENST00000629293 C10orf88Q9H8K7 445 aa4.78□□□□□ -1.64
LINC00550-201ENST00000629293 PHTF1Q9UMS5 762 aa4.78□□□□□ -1.64
LINC00550-201ENST00000629293 SF3B6Q9Y3B4 125 aaKnown RBP4.78□□□□□ -1.64
LINC00550-201ENST00000629293 ZFC3H1O60293 1989 aaKnown RBP4.78□□□□□ -1.65
LINC00550-201ENST00000629293 PRAMEF33A0A0G2JMD5 474 aa4.77□□□□□ -1.65
LINC00550-201ENST00000629293 A0A1W2PQM1 296 aa4.77□□□□□ -1.65
LINC00550-201ENST00000629293 ZNF487B1APH4 448 aa4.77□□□□□ -1.65
LINC00550-201ENST00000629293 INSIG1O15503 277 aa4.77□□□□□ -1.65
LINC00550-201ENST00000629293 PRAMEF10O60809 474 aa4.77□□□□□ -1.65
LINC00550-201ENST00000629293 ZMPSTE24O75844 475 aa4.77□□□□□ -1.65
LINC00550-201ENST00000629293 FAM155BO75949 473 aa4.77□□□□□ -1.65
LINC00550-201ENST00000629293 ATP6V1G2O95670 118 aa4.77□□□□□ -1.65
LINC00550-201ENST00000629293 IFNB1P01574 187 aa4.77□□□□□ -1.65
LINC00550-201ENST00000629293 C1QAP02745 245 aa4.77□□□□□ -1.65
LINC00550-201ENST00000629293 NQO1P15559 274 aaKnown RBP4.77□□□□□ -1.65
LINC00550-201ENST00000629293 GPD1P21695 349 aa4.77□□□□□ -1.65
LINC00550-201ENST00000629293 SDC4P31431 198 aa4.77□□□□□ -1.65
LINC00550-201ENST00000629293 RPA3P35244 121 aaPredicted RBP4.77□□□□□ -1.65
LINC00550-201ENST00000629293 ETV5P41161 510 aa4.77□□□□□ -1.65
LINC00550-201ENST00000629293 MAGEA6P43360 314 aa4.77□□□□□ -1.65
LINC00550-201ENST00000629293 CSRP3P50461 194 aa4.77□□□□□ -1.65
LINC00550-201ENST00000629293 EIF3EP60228 445 aaKnown RBP4.77□□□□□ -1.65
LINC00550-201ENST00000629293 PFN3P60673 137 aa4.77□□□□□ -1.65
LINC00550-201ENST00000629293 SPARCL1Q14515 664 aa4.77□□□□□ -1.65
LINC00550-201ENST00000629293 KRT72Q14CN4 511 aa4.77□□□□□ -1.65
LINC00550-201ENST00000629293 SLC1A5Q15758 541 aa4.77□□□□□ -1.65
LINC00550-201ENST00000629293 ALG11Q2TAA5 492 aa4.77□□□□□ -1.65
LINC00550-201ENST00000629293 KLHL38Q2WGJ6 581 aa4.77□□□□□ -1.65
LINC00550-201ENST00000629293 GDPD4Q6W3E5 623 aa4.77□□□□□ -1.65
LINC00550-201ENST00000629293 ACAD11Q709F0 780 aa4.77□□□□□ -1.65
LINC00550-201ENST00000629293 RFX6Q8HWS3 928 aa4.77□□□□□ -1.65
LINC00550-201ENST00000629293 NRSN1Q8IZ57 195 aa4.77□□□□□ -1.65
LINC00550-201ENST00000629293 Q8N1Y9 231 aa4.77□□□□□ -1.65
LINC00550-201ENST00000629293 PYROXD2Q8N2H3 581 aa4.77□□□□□ -1.65
LINC00550-201ENST00000629293 ARL10Q8N8L6 244 aa4.77□□□□□ -1.65
LINC00550-201ENST00000629293 CCL4L1Q8NHW4 92 aa4.77□□□□□ -1.65
LINC00550-201ENST00000629293 RXFP2Q8WXD0 754 aa4.77□□□□□ -1.65
LINC00550-201ENST00000629293 JADE3Q92613 823 aa4.77□□□□□ -1.65
LINC00550-201ENST00000629293 FAM131CQ96AQ9 280 aa4.77□□□□□ -1.65
LINC00550-201ENST00000629293 FAF2Q96CS3 445 aa4.77□□□□□ -1.65
LINC00550-201ENST00000629293 CELF6Q96J87 481 aaKnown RBP4.77□□□□□ -1.65
LINC00550-201ENST00000629293 CMKLR1Q99788 373 aa4.77□□□□□ -1.65
LINC00550-201ENST00000629293 VPS37BQ9H9H4 285 aa4.77□□□□□ -1.65
LINC00550-201ENST00000629293 USP29Q9HBJ7 922 aa4.77□□□□□ -1.65
LINC00550-201ENST00000629293 ASNSD1Q9NWL6 643 aa4.77□□□□□ -1.65
LINC00550-201ENST00000629293 ARHGEF38Q9NXL2 777 aa4.77□□□□□ -1.65
LINC00550-201ENST00000629293 FOXJ2Q9P0K8 574 aa4.77□□□□□ -1.65
LINC00550-201ENST00000629293 SEPT10Q9P0V9 454 aa4.77□□□□□ -1.65
LINC00550-201ENST00000629293 U3KQE9 123 aa4.77□□□□□ -1.65
LINC00550-201ENST00000629293 COL5A1P20908 1838 aaPredicted RBP4.77□□□□□ -1.65
LINC00550-201ENST00000629293 A0A1W2PPM1 405 aa4.77□□□□□ -1.65
LINC00550-201ENST00000629293 POC1B-GALNT4F8VUJ3 575 aa4.77□□□□□ -1.65
LINC00550-201ENST00000629293 F8W735 103 aaPredicted RBP4.77□□□□□ -1.65
LINC00550-201ENST00000629293 EDF1O60869 148 aaKnown RBP4.77□□□□□ -1.65
LINC00550-201ENST00000629293 SPAG7O75391 227 aa4.77□□□□□ -1.65
LINC00550-201ENST00000629293 ZWINTO95229 277 aa4.77□□□□□ -1.65
LINC00550-201ENST00000629293 IGSF6O95976 241 aa4.77□□□□□ -1.65
LINC00550-201ENST00000629293 CCL4P13236 92 aa4.77□□□□□ -1.65
LINC00550-201ENST00000629293 IL4RP24394 825 aa4.77□□□□□ -1.65
LINC00550-201ENST00000629293 SSTR1P30872 391 aa4.77□□□□□ -1.65
LINC00550-201ENST00000629293 PHBP35232 272 aa4.77□□□□□ -1.65
LINC00550-201ENST00000629293 MAZP56270 477 aaKnown RBP4.77□□□□□ -1.65
LINC00550-201ENST00000629293 SF3A3Q12874 501 aaKnown RBP eCLIP4.77□□□□□ -1.65
LINC00550-201ENST00000629293 EIF4EBP2Q13542 120 aaPredicted RBP4.77□□□□□ -1.65
Retrieved 100 of 20,778 RNA–protein pairs in 37.9 ms