RNA–Protein interactions for RNA: ENST00000616140.1

CPSF1-212, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CPSF1, Length 4,494 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-212ENST00000616140 TBX1O43435 398 aa13.75□□□□□ -0.21
CPSF1-212ENST00000616140 RSL1D1O76021 490 aaKnown RBP13.75□□□□□ -0.21
CPSF1-212ENST00000616140 CCNB2O95067 398 aa13.75□□□□□ -0.21
CPSF1-212ENST00000616140 DHFRP00374 187 aa13.75□□□□□ -0.21
CPSF1-212ENST00000616140 VARSP26640 1264 aaKnown RBP13.75□□□□□ -0.21
CPSF1-212ENST00000616140 CREB5Q02930 508 aa13.75□□□□□ -0.21
CPSF1-212ENST00000616140 CBX3Q13185 183 aa13.75□□□□□ -0.21
CPSF1-212ENST00000616140 IL18Q14116 193 aa13.75□□□□□ -0.21
CPSF1-212ENST00000616140 SLC2A7Q6PXP3 512 aa13.75□□□□□ -0.21
CPSF1-212ENST00000616140 ING5Q8WYH8 240 aa13.75□□□□□ -0.21
CPSF1-212ENST00000616140 FCRL4Q96PJ5 515 aa13.75□□□□□ -0.21
CPSF1-212ENST00000616140 KLHL31Q9H511 634 aa13.75□□□□□ -0.21
CPSF1-212ENST00000616140 C11orf16Q9NQ32 467 aa13.75□□□□□ -0.21
CPSF1-212ENST00000616140 MYH11P35749 1972 aa13.75□□□□□ -0.21
CPSF1-212ENST00000616140 ILVBLA1L0T0 632 aa13.75□□□□□ -0.21
CPSF1-212ENST00000616140 CPSF4LA6NMK7 179 aaKnown RBP13.75□□□□□ -0.21
CPSF1-212ENST00000616140 CLIC1O00299 241 aa13.75□□□□□ -0.21
CPSF1-212ENST00000616140 PRPS1L1P21108 318 aa13.75□□□□□ -0.21
CPSF1-212ENST00000616140 FMO3P31513 532 aa13.75□□□□□ -0.21
CPSF1-212ENST00000616140 RPS6KA3P51812 740 aa13.75□□□□□ -0.21
CPSF1-212ENST00000616140 PTPRCAPQ14761 206 aa13.75□□□□□ -0.21
CPSF1-212ENST00000616140 ZFP69Q49AA0 526 aa13.75□□□□□ -0.21
CPSF1-212ENST00000616140 ZNF433Q8N7K0 673 aaPredicted RBP13.75□□□□□ -0.21
CPSF1-212ENST00000616140 FAM110BQ8TC76 370 aa13.75□□□□□ -0.21
CPSF1-212ENST00000616140 TMBIM1Q969X1 311 aa13.75□□□□□ -0.21
CPSF1-212ENST00000616140 RACGAP1Q9H0H5 632 aa13.75□□□□□ -0.21
CPSF1-212ENST00000616140 IRGMA1A4Y4 181 aa13.75□□□□□ -0.21
CPSF1-212ENST00000616140 ANKRD66B4E2M5 251 aa13.75□□□□□ -0.21
CPSF1-212ENST00000616140 E7ESA3 106 aa13.75□□□□□ -0.21
CPSF1-212ENST00000616140 CNTN5O94779 1100 aa13.75□□□□□ -0.21
CPSF1-212ENST00000616140 CDH1P12830 882 aa13.75□□□□□ -0.21
CPSF1-212ENST00000616140 IGFBP4P22692 258 aa13.75□□□□□ -0.21
CPSF1-212ENST00000616140 UFM1P61960 85 aa13.75□□□□□ -0.21
CPSF1-212ENST00000616140 LARS2Q15031 903 aaKnown RBP13.75□□□□□ -0.21
CPSF1-212ENST00000616140 RNASE12Q5GAN4 147 aaKnown RBP13.75□□□□□ -0.21
CPSF1-212ENST00000616140 NEK5Q6P3R8 708 aa13.75□□□□□ -0.21
CPSF1-212ENST00000616140 RAB43Q86YS6 212 aa13.75□□□□□ -0.21
CPSF1-212ENST00000616140 PCYT2Q99447 389 aa13.75□□□□□ -0.21
CPSF1-212ENST00000616140 HERPUD2Q9BSE4 406 aa13.75□□□□□ -0.21
CPSF1-212ENST00000616140 CRTAC1Q9NQ79 661 aa13.75□□□□□ -0.21
CPSF1-212ENST00000616140 ACTR3BQ9P1U1 418 aa13.75□□□□□ -0.21
CPSF1-212ENST00000616140 FBXW2Q9UKT8 454 aa13.75□□□□□ -0.21
CPSF1-212ENST00000616140 IQCMA0A1B0GVH7 501 aa13.74□□□□□ -0.21
CPSF1-212ENST00000616140 A0A1W2PP18 115 aa13.74□□□□□ -0.21
CPSF1-212ENST00000616140 LRRC14BA6NHZ5 514 aa13.74□□□□□ -0.21
CPSF1-212ENST00000616140 SAP18O00422 153 aaKnown RBP13.74□□□□□ -0.21
CPSF1-212ENST00000616140 PI15O43692 258 aa13.74□□□□□ -0.21
CPSF1-212ENST00000616140 BCAS2O75934 225 aaPredicted RBP13.74□□□□□ -0.21
CPSF1-212ENST00000616140 BNIP3Q12983 259 aa13.74□□□□□ -0.21
CPSF1-212ENST00000616140 TOMM20Q15388 145 aa13.74□□□□□ -0.21
CPSF1-212ENST00000616140 USP30Q70CQ3 517 aa13.74□□□□□ -0.21
CPSF1-212ENST00000616140 DNAJB7Q7Z6W7 309 aaPredicted RBP13.74□□□□□ -0.21
CPSF1-212ENST00000616140 ZNF248Q8NDW4 579 aa13.74□□□□□ -0.21
CPSF1-212ENST00000616140 KCNA7Q96RP8 456 aa13.74□□□□□ -0.21
CPSF1-212ENST00000616140 SYT17Q9BSW7 474 aa13.74□□□□□ -0.21
CPSF1-212ENST00000616140 SCAMP1O15126 338 aa13.74□□□□□ -0.21
CPSF1-212ENST00000616140 FAM163BP0C2L3 166 aa13.74□□□□□ -0.21
CPSF1-212ENST00000616140 OMPP47874 163 aa13.74□□□□□ -0.21
CPSF1-212ENST00000616140 PRKCZQ05513 592 aa13.74□□□□□ -0.21
CPSF1-212ENST00000616140 RAPSNQ13702 412 aa13.74□□□□□ -0.21
CPSF1-212ENST00000616140 CXorf57Q6NSI4 855 aaKnown RBP13.74□□□□□ -0.21
CPSF1-212ENST00000616140 CHST15Q7LFX5 561 aaPredicted RBP13.74□□□□□ -0.21
CPSF1-212ENST00000616140 CILP2Q8IUL8 1156 aa13.74□□□□□ -0.21
CPSF1-212ENST00000616140 TXNDC5Q8NBS9 432 aaKnown RBP13.74□□□□□ -0.21
CPSF1-212ENST00000616140 OR14C36Q8NHC7 312 aa13.74□□□□□ -0.21
CPSF1-212ENST00000616140 CD99L2Q8TCZ2 262 aa13.74□□□□□ -0.21
CPSF1-212ENST00000616140 SCLYQ96I15 445 aa13.74□□□□□ -0.21
CPSF1-212ENST00000616140 GMLQ99445 158 aa13.74□□□□□ -0.21
CPSF1-212ENST00000616140 VPS29Q9UBQ0 182 aa13.74□□□□□ -0.21
CPSF1-212ENST00000616140 IRAK3Q9Y616 596 aa13.74□□□□□ -0.21
CPSF1-212ENST00000616140 LMO7Q8WWI1 1683 aa13.74□□□□□ -0.21
CPSF1-212ENST00000616140 A0A0G2JN53 185 aa13.74□□□□□ -0.21
CPSF1-212ENST00000616140 ZNF99A8MXY4 864 aaPredicted RBP13.74□□□□□ -0.21
CPSF1-212ENST00000616140 PCDH7O60245 1069 aa13.74□□□□□ -0.21
CPSF1-212ENST00000616140 NFATC1O95644 943 aa13.74□□□□□ -0.21
CPSF1-212ENST00000616140 IVDP26440 423 aa13.74□□□□□ -0.21
CPSF1-212ENST00000616140 DSC3Q14574 896 aa13.74□□□□□ -0.21
CPSF1-212ENST00000616140 KLHDC10Q6PID8 442 aa13.74□□□□□ -0.21
CPSF1-212ENST00000616140 PHC3Q8NDX5 983 aa13.74□□□□□ -0.21
CPSF1-212ENST00000616140 NSUN3Q9H649 340 aaKnown RBP13.74□□□□□ -0.21
CPSF1-212ENST00000616140 TLE6Q9H808 572 aa13.74□□□□□ -0.21
CPSF1-212ENST00000616140 ZIM2Q9NZV7 527 aa13.74□□□□□ -0.21
CPSF1-212ENST00000616140 COMMD9Q9P000 198 aa13.74□□□□□ -0.21
CPSF1-212ENST00000616140 IKZF2Q9UKS7 526 aa13.74□□□□□ -0.21
CPSF1-212ENST00000616140 CD247P20963 164 aa13.74□□□□□ -0.21
CPSF1-212ENST00000616140 NT5EP21589 574 aa13.74□□□□□ -0.21
CPSF1-212ENST00000616140 MYBPC1Q00872 1141 aa13.74□□□□□ -0.21
CPSF1-212ENST00000616140 SCN1BQ07699 218 aa13.74□□□□□ -0.21
CPSF1-212ENST00000616140 CHRNA6Q15825 494 aa13.74□□□□□ -0.21
CPSF1-212ENST00000616140 ATP13A5Q4VNC0 1218 aa13.74□□□□□ -0.21
CPSF1-212ENST00000616140 UBXN11Q5T124 520 aa13.74□□□□□ -0.21
CPSF1-212ENST00000616140 FAM171BQ6P995 826 aa13.74□□□□□ -0.21
CPSF1-212ENST00000616140 PACRGLQ8N7B6 248 aa13.74□□□□□ -0.21
CPSF1-212ENST00000616140 OR10Q1Q8NGQ4 319 aa13.74□□□□□ -0.21
CPSF1-212ENST00000616140 RASSF5Q8WWW0 418 aa13.74□□□□□ -0.21
CPSF1-212ENST00000616140 TP53INP1Q96A56 240 aa13.74□□□□□ -0.21
CPSF1-212ENST00000616140 SUV39H2Q9H5I1 410 aa13.74□□□□□ -0.21
CPSF1-212ENST00000616140 ELL3Q9HB65 397 aaPredicted RBP13.74□□□□□ -0.21
CPSF1-212ENST00000616140 TVP23BQ9NYZ1 205 aa13.74□□□□□ -0.21
CPSF1-212ENST00000616140 COQ6Q9Y2Z9 468 aa13.74□□□□□ -0.21
Retrieved 100 of 20,778 RNA–protein pairs in 34 ms