RNA–Protein interactions for RNA: ENST00000614932.1

VPS39-214, Transcript of VPS39, HOPS complex subunit, humanhuman

Gene VPS39, Length 2,835 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-214ENST00000614932 CPB1P15086 417 aa10.04□□□□□ -0.8
VPS39-214ENST00000614932 PDGFRAP16234 1089 aa10.04□□□□□ -0.8
VPS39-214ENST00000614932 PTPN7P35236 360 aa10.04□□□□□ -0.8
VPS39-214ENST00000614932 GDI2P50395 445 aaKnown RBP10.04□□□□□ -0.8
VPS39-214ENST00000614932 AIF1P55008 147 aa10.04□□□□□ -0.8
VPS39-214ENST00000614932 RBP5P82980 135 aa10.04□□□□□ -0.8
VPS39-214ENST00000614932 SLC25A11Q02978 314 aaKnown RBP10.04□□□□□ -0.8
VPS39-214ENST00000614932 DPYSL3Q14195 570 aa10.04□□□□□ -0.8
VPS39-214ENST00000614932 ZMAT1Q5H9K5 638 aa10.04□□□□□ -0.8
VPS39-214ENST00000614932 SYT6Q5T7P8 510 aaPredicted RBP10.04□□□□□ -0.8
VPS39-214ENST00000614932 REP15Q6BDI9 236 aa10.04□□□□□ -0.8
VPS39-214ENST00000614932 CES5AQ6NT32 575 aa10.04□□□□□ -0.8
VPS39-214ENST00000614932 FAM180BQ6P0A1 224 aa10.04□□□□□ -0.8
VPS39-214ENST00000614932 TBPL2Q6SJ96 375 aa10.04□□□□□ -0.8
VPS39-214ENST00000614932 GANCQ8TET4 914 aa10.04□□□□□ -0.8
VPS39-214ENST00000614932 RXFP2Q8WXD0 754 aa10.04□□□□□ -0.8
VPS39-214ENST00000614932 MYDGFQ969H8 173 aa10.04□□□□□ -0.8
VPS39-214ENST00000614932 NPAS1Q99742 590 aa10.04□□□□□ -0.8
VPS39-214ENST00000614932 RRAGCQ9HB90 399 aa10.04□□□□□ -0.8
VPS39-214ENST00000614932 GBA2Q9HCG7 927 aaPredicted RBP10.04□□□□□ -0.8
VPS39-214ENST00000614932 COX16Q9P0S2 106 aa10.04□□□□□ -0.8
VPS39-214ENST00000614932 INTS6Q9UL03 887 aaKnown RBP10.04□□□□□ -0.8
VPS39-214ENST00000614932 PIN4Q9Y237 131 aaKnown RBP10.04□□□□□ -0.8
VPS39-214ENST00000614932 DERAQ9Y315 318 aa10.04□□□□□ -0.8
VPS39-214ENST00000614932 U3KQV3 271 aa10.04□□□□□ -0.8
VPS39-214ENST00000614932 FAM92AA1XBS5 289 aa10.03□□□□□ -0.8
VPS39-214ENST00000614932 FAM159BA6NKW6 160 aa10.03□□□□□ -0.8
VPS39-214ENST00000614932 CLDN24A6NM45 220 aa10.03□□□□□ -0.8
VPS39-214ENST00000614932 SLC1A7O00341 560 aa10.03□□□□□ -0.8
VPS39-214ENST00000614932 TREHO43280 583 aa10.03□□□□□ -0.8
VPS39-214ENST00000614932 TRIM3O75382 744 aaPredicted RBP10.03□□□□□ -0.8
VPS39-214ENST00000614932 LDLRP01130 860 aa10.03□□□□□ -0.8
VPS39-214ENST00000614932 EPOP01588 193 aa10.03□□□□□ -0.8
VPS39-214ENST00000614932 MYL3P08590 195 aa10.03□□□□□ -0.8
VPS39-214ENST00000614932 THRBP10828 461 aa10.03□□□□□ -0.8
VPS39-214ENST00000614932 KDELR1P24390 212 aa10.03□□□□□ -0.8
VPS39-214ENST00000614932 PSMB9P28065 219 aa10.03□□□□□ -0.8
VPS39-214ENST00000614932 HOXA11P31270 313 aaPredicted RBP10.03□□□□□ -0.8
VPS39-214ENST00000614932 GMPRP36959 345 aa10.03□□□□□ -0.8
VPS39-214ENST00000614932 GTF2A2P52657 109 aa10.03□□□□□ -0.8
VPS39-214ENST00000614932 CDH6P55285 790 aa10.03□□□□□ -0.8
VPS39-214ENST00000614932 CBLBQ13191 982 aa10.03□□□□□ -0.8
VPS39-214ENST00000614932 DGCR6Q14129 220 aa10.03□□□□□ -0.8
VPS39-214ENST00000614932 ANGPT1Q15389 498 aa10.03□□□□□ -0.8
VPS39-214ENST00000614932 DUSP6Q16828 381 aa10.03□□□□□ -0.8
VPS39-214ENST00000614932 RTP2Q5QGT7 225 aa10.03□□□□□ -0.8
VPS39-214ENST00000614932 METTL23Q86XA0 190 aa10.03□□□□□ -0.8
VPS39-214ENST00000614932 RASAL3Q86YV0 1011 aa10.03□□□□□ -0.8
VPS39-214ENST00000614932 LINC01465Q8N7H1 131 aa10.03□□□□□ -0.8
VPS39-214ENST00000614932 RNF34Q969K3 372 aa10.03□□□□□ -0.8
VPS39-214ENST00000614932 NAT9Q9BTE0 207 aa10.03□□□□□ -0.8
VPS39-214ENST00000614932 MMP28Q9H239 520 aa10.03□□□□□ -0.8
VPS39-214ENST00000614932 ELOVL6Q9H5J4 265 aa10.03□□□□□ -0.8
VPS39-214ENST00000614932 USP18Q9UMW8 372 aa10.03□□□□□ -0.8
VPS39-214ENST00000614932 A0A1B0GVM2 712 aa10.03□□□□□ -0.8
VPS39-214ENST00000614932 C3orf70A6NLC5 250 aaPredicted RBP10.03□□□□□ -0.8
VPS39-214ENST00000614932 HNRNPCL2B2RXH8 293 aa10.03□□□□□ -0.8
VPS39-214ENST00000614932 TBC1D4O60343 1298 aa10.03□□□□□ -0.8
VPS39-214ENST00000614932 AHSGP02765 367 aa10.03□□□□□ -0.8
VPS39-214ENST00000614932 AGXTP21549 392 aa10.03□□□□□ -0.8
VPS39-214ENST00000614932 MYL9P24844 172 aa10.03□□□□□ -0.8
VPS39-214ENST00000614932 MPSTP25325 297 aa10.03□□□□□ -0.8
VPS39-214ENST00000614932 LMO2P25791 158 aa10.03□□□□□ -0.8
VPS39-214ENST00000614932 OXTRP30559 389 aa10.03□□□□□ -0.8
VPS39-214ENST00000614932 GPC1P35052 558 aa10.03□□□□□ -0.8
VPS39-214ENST00000614932 RPL14P50914 215 aaKnown RBP10.03□□□□□ -0.8
VPS39-214ENST00000614932 ALDH3A2P51648 485 aa10.03□□□□□ -0.8
VPS39-214ENST00000614932 SLC7A2P52569 658 aa10.03□□□□□ -0.8
VPS39-214ENST00000614932 YWHAZP63104 245 aaKnown RBP10.03□□□□□ -0.8
VPS39-214ENST00000614932 ZNF91Q05481 1191 aa10.03□□□□□ -0.8
VPS39-214ENST00000614932 CLCA4Q14CN2 919 aa10.03□□□□□ -0.8
VPS39-214ENST00000614932 CTU2Q2VPK5 515 aaKnown RBP10.03□□□□□ -0.8
VPS39-214ENST00000614932 DUSP28Q4G0W2 176 aa10.03□□□□□ -0.8
VPS39-214ENST00000614932 CLLU1Q5K131 121 aa10.03□□□□□ -0.8
VPS39-214ENST00000614932 NAPRTQ6XQN6 538 aa10.03□□□□□ -0.8
VPS39-214ENST00000614932 PLEKHH3Q7Z736 793 aa10.03□□□□□ -0.8
VPS39-214ENST00000614932 C3orf58Q8NDZ4 430 aa10.03□□□□□ -0.8
VPS39-214ENST00000614932 DEPDC1BQ8WUY9 529 aa10.03□□□□□ -0.8
VPS39-214ENST00000614932 ARL5BQ96KC2 179 aa10.03□□□□□ -0.8
VPS39-214ENST00000614932 FRMD8P1Q9BZ68 369 aaPredicted RBP10.03□□□□□ -0.8
VPS39-214ENST00000614932 POPDC2Q9HBU9 364 aa10.03□□□□□ -0.8
VPS39-214ENST00000614932 LIPT1Q9Y234 373 aa10.03□□□□□ -0.8
VPS39-214ENST00000614932 TRAPPC4Q9Y296 219 aa10.03□□□□□ -0.8
VPS39-214ENST00000614932 PCDHGA9Q9Y5G4 932 aaKnown RBP10.03□□□□□ -0.8
VPS39-214ENST00000614932 LYVE1Q9Y5Y7 322 aa10.03□□□□□ -0.8
VPS39-214ENST00000614932 DOCK3Q8IZD9 2030 aa10.03□□□□□ -0.8
VPS39-214ENST00000614932 C17orf113A0A1B0GUU1 675 aa10.02□□□□□ -0.8
VPS39-214ENST00000614932 TTC24A2A3L6 582 aaPredicted RBP10.02□□□□□ -0.8
VPS39-214ENST00000614932 TPP1O14773 563 aa10.02□□□□□ -0.8
VPS39-214ENST00000614932 TLL1O43897 1013 aa10.02□□□□□ -0.8
VPS39-214ENST00000614932 ALDOAP04075 364 aaKnown RBP10.02□□□□□ -0.8
VPS39-214ENST00000614932 SMIM10L2AP0DMW4 78 aa10.02□□□□□ -0.8
VPS39-214ENST00000614932 SMIM10L2BP0DMW5 78 aa10.02□□□□□ -0.8
VPS39-214ENST00000614932 LCP1P13796 627 aa10.02□□□□□ -0.8
VPS39-214ENST00000614932 MTHFRP42898 656 aa10.02□□□□□ -0.8
VPS39-214ENST00000614932 SMAD1Q15797 465 aaKnown RBP10.02□□□□□ -0.8
VPS39-214ENST00000614932 HADHQ16836 314 aaKnown RBP10.02□□□□□ -0.8
VPS39-214ENST00000614932 GTDC1Q4AE62 458 aa10.02□□□□□ -0.8
VPS39-214ENST00000614932 OTUD3Q5T2D3 398 aaPredicted RBP10.02□□□□□ -0.8
VPS39-214ENST00000614932 LCN8Q6JVE9 175 aa10.02□□□□□ -0.8
Retrieved 100 of 20,778 RNA–protein pairs in 66.5 ms