RNA–Protein interactions for RNA: ENST00000571456.1

VPS53-210, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 3

Gene VPS53, Length 744 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-210ENST00000571456 KLHL35Q6PF15 583 aa20.06■□□□□ 0.8
VPS53-210ENST00000571456 TMEM26Q6ZUK4 368 aa20.06■□□□□ 0.8
VPS53-210ENST00000571456 CCDC91Q7Z6B0 441 aa20.06■□□□□ 0.8
VPS53-210ENST00000571456 TBC1D21Q8IYX1 336 aa20.06■□□□□ 0.8
VPS53-210ENST00000571456 GPATCH11Q8N954 259 aa20.06■□□□□ 0.8
VPS53-210ENST00000571456 ZNF248Q8NDW4 579 aa20.06■□□□□ 0.8
VPS53-210ENST00000571456 PHC3Q8NDX5 983 aa20.06■□□□□ 0.8
VPS53-210ENST00000571456 PATE1Q8WXA2 126 aa20.06■□□□□ 0.8
VPS53-210ENST00000571456 GRAMD1AQ96CP6 724 aa20.06■□□□□ 0.8
VPS53-210ENST00000571456 GPR21Q99679 349 aa20.06■□□□□ 0.8
VPS53-210ENST00000571456 CCDC3Q9BQI4 270 aa20.06■□□□□ 0.8
VPS53-210ENST00000571456 CCDC77Q9BR77 488 aa20.06■□□□□ 0.8
VPS53-210ENST00000571456 ABCG4Q9H172 646 aa20.06■□□□□ 0.8
VPS53-210ENST00000571456 TRIT1Q9H3H1 467 aaKnown RBP20.06■□□□□ 0.8
VPS53-210ENST00000571456 CPNE5Q9HCH3 593 aa20.06■□□□□ 0.8
VPS53-210ENST00000571456 SYTL2Q9HCH5 934 aa20.06■□□□□ 0.8
VPS53-210ENST00000571456 IMP3Q9NV31 184 aaKnown RBP20.06■□□□□ 0.8
VPS53-210ENST00000571456 RAB21Q9UL25 225 aa20.06■□□□□ 0.8
VPS53-210ENST00000571456 PSAT1Q9Y617 370 aa20.06■□□□□ 0.8
VPS53-210ENST00000571456 FAM95CA0A1B0GW59 222 aa20.05■□□□□ 0.8
VPS53-210ENST00000571456 OR52A4PA6NMU1 304 aa20.05■□□□□ 0.8
VPS53-210ENST00000571456 PPM1DO15297 605 aa20.05■□□□□ 0.8
VPS53-210ENST00000571456 RIPK2O43353 540 aa20.05■□□□□ 0.8
VPS53-210ENST00000571456 MPC1LP0DKB6 136 aa20.05■□□□□ 0.8
VPS53-210ENST00000571456 CNTFP26441 200 aa20.05■□□□□ 0.8
VPS53-210ENST00000571456 PDHA2P29803 388 aa20.05■□□□□ 0.8
VPS53-210ENST00000571456 CCNFP41002 786 aa20.05■□□□□ 0.8
VPS53-210ENST00000571456 SERPINB9P50453 376 aa20.05■□□□□ 0.8
VPS53-210ENST00000571456 SLC12A2P55011 1212 aa20.05■□□□□ 0.8
VPS53-210ENST00000571456 PDAP1Q13442 181 aaKnown RBP20.05■□□□□ 0.8
VPS53-210ENST00000571456 TTC23LQ6PF05 361 aa20.05■□□□□ 0.8
VPS53-210ENST00000571456 SPRED1Q7Z699 444 aa20.05■□□□□ 0.8
VPS53-210ENST00000571456 LILRA3Q8N6C8 439 aaPredicted RBP20.05■□□□□ 0.8
VPS53-210ENST00000571456 ACVR1CQ8NER5 493 aa20.05■□□□□ 0.8
VPS53-210ENST00000571456 OR10G6Q8NH81 332 aa20.05■□□□□ 0.8
VPS53-210ENST00000571456 OR5K2Q8NHB8 316 aa20.05■□□□□ 0.8
VPS53-210ENST00000571456 CD200R1Q8TD46 325 aa20.05■□□□□ 0.8
VPS53-210ENST00000571456 TTC9Q92623 222 aa20.05■□□□□ 0.8
VPS53-210ENST00000571456 MED8Q96G25 268 aa20.05■□□□□ 0.8
VPS53-210ENST00000571456 GPR22Q99680 433 aa20.05■□□□□ 0.8
VPS53-210ENST00000571456 KIR3DX1Q9H7L2 352 aa20.05■□□□□ 0.8
VPS53-210ENST00000571456 KCNK4Q9NYG8 393 aa20.05■□□□□ 0.8
VPS53-210ENST00000571456 ASF1AQ9Y294 204 aa20.05■□□□□ 0.8
VPS53-210ENST00000571456 MED16Q9Y2X0 877 aa20.05■□□□□ 0.8
VPS53-210ENST00000571456 LRRK2Q5S007 2527 aa20.05■□□□□ 0.8
VPS53-210ENST00000571456 CXorf49A8MYA2 514 aaPredicted RBP20.04■□□□□ 0.8
VPS53-210ENST00000571456 FAM153BP0C7A2 387 aa20.04■□□□□ 0.8
VPS53-210ENST00000571456 MYBL2P10244 700 aa20.04■□□□□ 0.8
VPS53-210ENST00000571456 FAM153CQ494X1 144 aa20.04■□□□□ 0.8
VPS53-210ENST00000571456 LGSNQ5TDP6 509 aa20.04■□□□□ 0.8
VPS53-210ENST00000571456 ANKRD7Q92527 254 aa20.04■□□□□ 0.8
VPS53-210ENST00000571456 NAF1Q96HR8 494 aaKnown RBP20.04■□□□□ 0.8
VPS53-210ENST00000571456 NDNQ99608 321 aa20.04■□□□□ 0.8
VPS53-210ENST00000571456 SLC17A6Q9P2U8 582 aa20.04■□□□□ 0.8
VPS53-210ENST00000571456 ZNF180Q9UJW8 692 aa20.04■□□□□ 0.8
VPS53-210ENST00000571456 TRBV23OR9-2A0A075B6M9 112 aa20.03■□□□□ 0.8
VPS53-210ENST00000571456 TMX2-CTNND1H3BSU7 103 aa20.03■□□□□ 0.8
VPS53-210ENST00000571456 DUX1O43812 170 aa20.03■□□□□ 0.8
VPS53-210ENST00000571456 OPA1O60313 960 aa20.03■□□□□ 0.8
VPS53-210ENST00000571456 MATN4O95460 622 aa20.03■□□□□ 0.8
VPS53-210ENST00000571456 INHBAP08476 426 aa20.03■□□□□ 0.8
VPS53-210ENST00000571456 PCBP4P57723 403 aaKnown RBP20.03■□□□□ 0.8
VPS53-210ENST00000571456 BRD3Q15059 726 aa20.03■□□□□ 0.8
VPS53-210ENST00000571456 PERM1Q5SV97 790 aa20.03■□□□□ 0.8
VPS53-210ENST00000571456 RBM20Q5T481 1227 aaKnown RBP20.03■□□□□ 0.8
VPS53-210ENST00000571456 PRICKLE2Q7Z3G6 844 aa20.03■□□□□ 0.8
VPS53-210ENST00000571456 DCUN1D3Q8IWE4 304 aa20.03■□□□□ 0.8
VPS53-210ENST00000571456 NKAPQ8N5F7 415 aaKnown RBP20.03■□□□□ 0.8
VPS53-210ENST00000571456 SIDT2Q8NBJ9 832 aaKnown RBP20.03■□□□□ 0.8
VPS53-210ENST00000571456 SPDYE1Q8NFV5 336 aaPredicted RBP20.03■□□□□ 0.8
VPS53-210ENST00000571456 SLC44A1Q8WWI5 657 aa20.03■□□□□ 0.8
VPS53-210ENST00000571456 CAVIN3Q969G5 261 aa20.03■□□□□ 0.8
VPS53-210ENST00000571456 PDLIM5Q96HC4 596 aaKnown RBP20.03■□□□□ 0.8
VPS53-210ENST00000571456 AHCYL2Q96HN2 611 aaKnown RBP20.03■□□□□ 0.8
VPS53-210ENST00000571456 ELMO2Q96JJ3 720 aa20.03■□□□□ 0.8
VPS53-210ENST00000571456 FERD3LQ96RJ6 166 aa20.03■□□□□ 0.8
VPS53-210ENST00000571456 RAB11FIP5Q9BXF6 653 aa20.03■□□□□ 0.8
VPS53-210ENST00000571456 PARD6BQ9BYG5 372 aa20.03■□□□□ 0.8
VPS53-210ENST00000571456 LRRN3Q9H3W5 708 aa20.03■□□□□ 0.8
VPS53-210ENST00000571456 TFB2MQ9H5Q4 396 aaKnown RBP20.03■□□□□ 0.8
VPS53-210ENST00000571456 IL17BQ9UHF5 180 aa20.03■□□□□ 0.8
VPS53-210ENST00000571456 NOTCH2Q04721 2471 aa20.02■□□□□ 0.8
VPS53-210ENST00000571456 EXOC1LA0A1B0GW35 172 aa20.02■□□□□ 0.8
VPS53-210ENST00000571456 MATN2O00339 956 aa20.02■□□□□ 0.8
VPS53-210ENST00000571456 KRT38O76015 456 aa20.02■□□□□ 0.8
VPS53-210ENST00000571456 CPNE6O95741 557 aa20.02■□□□□ 0.8
VPS53-210ENST00000571456 ITGA2BP08514 1039 aa20.02■□□□□ 0.8
VPS53-210ENST00000571456 MSH2P43246 934 aa20.02■□□□□ 0.8
VPS53-210ENST00000571456 IL2P60568 153 aa20.02■□□□□ 0.8
VPS53-210ENST00000571456 SPIDRQ14159 915 aa20.02■□□□□ 0.8
VPS53-210ENST00000571456 GPR18Q14330 331 aa20.02■□□□□ 0.8
VPS53-210ENST00000571456 SFTPA2Q8IWL1 248 aa20.02■□□□□ 0.8
VPS53-210ENST00000571456 RAB42Q8N4Z0 105 aa20.02■□□□□ 0.8
VPS53-210ENST00000571456 FBXO15Q8NCQ5 510 aaPredicted RBP20.02■□□□□ 0.8
VPS53-210ENST00000571456 AENQ8WTP8 325 aaKnown RBP20.02■□□□□ 0.8
VPS53-210ENST00000571456 SKA2Q8WVK7 121 aaPredicted RBP20.02■□□□□ 0.8
VPS53-210ENST00000571456 RAD51AP1Q96B01 352 aa20.02■□□□□ 0.8
VPS53-210ENST00000571456 RAB33BQ9H082 229 aa20.02■□□□□ 0.8
VPS53-210ENST00000571456 IGSF5Q9NSI5 407 aa20.02■□□□□ 0.8
VPS53-210ENST00000571456 SLC24A2Q9UI40 661 aa20.02■□□□□ 0.8
Retrieved 100 of 20,778 RNA–protein pairs in 24.5 ms