RNA–Protein interactions for RNA: ENST00000566824.6

CLN3-225, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,326 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-225ENST00000566824 ARHGEF33A8MVX0 844 aa18.98■□□□□ 0.63
CLN3-225ENST00000566824 ZW10O43264 779 aa18.98■□□□□ 0.63
CLN3-225ENST00000566824 C9P02748 559 aa18.98■□□□□ 0.63
CLN3-225ENST00000566824 MPOP05164 745 aa18.98■□□□□ 0.63
CLN3-225ENST00000566824 POLR2CP19387 275 aaPredicted RBP18.98■□□□□ 0.63
CLN3-225ENST00000566824 CD9P21926 228 aa18.98■□□□□ 0.63
CLN3-225ENST00000566824 GP5P40197 560 aa18.98■□□□□ 0.63
CLN3-225ENST00000566824 CLPPQ16740 277 aaPredicted RBP18.98■□□□□ 0.63
CLN3-225ENST00000566824 EEF1AKMT2Q5JPI9 291 aaKnown RBP18.98■□□□□ 0.63
CLN3-225ENST00000566824 IRGCQ6NXR0 463 aa18.98■□□□□ 0.63
CLN3-225ENST00000566824 FBXO38Q6PIJ6 1188 aa18.98■□□□□ 0.63
CLN3-225ENST00000566824 FAM92BQ6ZTR7 304 aa18.98■□□□□ 0.63
CLN3-225ENST00000566824 CEP128Q6ZU80 1094 aa18.98■□□□□ 0.63
CLN3-225ENST00000566824 ADGRF3Q8IZF5 1079 aa18.98■□□□□ 0.63
CLN3-225ENST00000566824 GATA6Q92908 595 aa18.98■□□□□ 0.63
CLN3-225ENST00000566824 PRR11Q96HE9 360 aaPredicted RBP18.98■□□□□ 0.63
CLN3-225ENST00000566824 CPNE1Q99829 537 aa18.98■□□□□ 0.63
CLN3-225ENST00000566824 FUT8Q9BYC5 575 aa18.98■□□□□ 0.63
CLN3-225ENST00000566824 SRMSQ9H3Y6 488 aa18.98■□□□□ 0.63
CLN3-225ENST00000566824 EPB41L1Q9H4G0 881 aa18.98■□□□□ 0.63
CLN3-225ENST00000566824 ACSS3Q9H6R3 686 aa18.98■□□□□ 0.63
CLN3-225ENST00000566824 HRASLS2Q9NWW9 162 aa18.98■□□□□ 0.63
CLN3-225ENST00000566824 ADAMTS6Q9UKP5 1117 aa18.98■□□□□ 0.63
CLN3-225ENST00000566824 PSIP1O75475 530 aaKnown RBP18.97■□□□□ 0.63
CLN3-225ENST00000566824 TNFRSF8P28908 595 aa18.97■□□□□ 0.63
CLN3-225ENST00000566824 VSNL1P62760 191 aa18.97■□□□□ 0.63
CLN3-225ENST00000566824 NAA30Q147X3 362 aaPredicted RBP18.97■□□□□ 0.63
CLN3-225ENST00000566824 TTLL9Q3SXZ7 439 aa18.97■□□□□ 0.63
CLN3-225ENST00000566824 C3orf38Q5JPI3 329 aa18.97■□□□□ 0.63
CLN3-225ENST00000566824 ARHGAP22Q7Z5H3 698 aa18.97■□□□□ 0.63
CLN3-225ENST00000566824 AMIGO1Q86WK6 493 aa18.97■□□□□ 0.63
CLN3-225ENST00000566824 DCUN1D3Q8IWE4 304 aa18.97■□□□□ 0.63
CLN3-225ENST00000566824 C2orf73Q8N5S3 287 aaPredicted RBP18.97■□□□□ 0.63
CLN3-225ENST00000566824 DENND1AQ8TEH3 1009 aa18.97■□□□□ 0.63
CLN3-225ENST00000566824 DLG3Q92796 817 aa18.97■□□□□ 0.63
CLN3-225ENST00000566824 LINGO1Q96FE5 620 aa18.97■□□□□ 0.63
CLN3-225ENST00000566824 TMEM74Q96NL1 305 aa18.97■□□□□ 0.63
CLN3-225ENST00000566824 SPHK1Q9NYA1 384 aa18.97■□□□□ 0.63
CLN3-225ENST00000566824 POLG2Q9UHN1 485 aa18.97■□□□□ 0.63
CLN3-225ENST00000566824 SLC39A10Q9ULF5 831 aa18.97■□□□□ 0.63
CLN3-225ENST00000566824 SATB2Q9UPW6 733 aa18.97■□□□□ 0.63
CLN3-225ENST00000566824 HMX2A2RU54 273 aa18.96■□□□□ 0.63
CLN3-225ENST00000566824 MPC1LP0DKB6 136 aa18.96■□□□□ 0.63
CLN3-225ENST00000566824 CCL4P13236 92 aa18.96■□□□□ 0.63
CLN3-225ENST00000566824 PEBP1P30086 187 aaKnown RBP18.96■□□□□ 0.63
CLN3-225ENST00000566824 PKLRP30613 574 aa18.96■□□□□ 0.63
CLN3-225ENST00000566824 ETV5P41161 510 aa18.96■□□□□ 0.63
CLN3-225ENST00000566824 SKIV2L2P42285 1042 aaKnown RBP18.96■□□□□ 0.63
CLN3-225ENST00000566824 LSSP48449 732 aa18.96■□□□□ 0.63
CLN3-225ENST00000566824 KPNA2P52292 529 aaKnown RBP18.96■□□□□ 0.63
CLN3-225ENST00000566824 PMS2P54278 862 aa18.96■□□□□ 0.63
CLN3-225ENST00000566824 PDAP1Q13442 181 aaKnown RBP18.96■□□□□ 0.63
CLN3-225ENST00000566824 SLMAPQ14BN4 828 aa18.96■□□□□ 0.63
CLN3-225ENST00000566824 ERCC6LQ2NKX8 1250 aa18.96■□□□□ 0.63
CLN3-225ENST00000566824 FOXR1Q6PIV2 292 aa18.96■□□□□ 0.63
CLN3-225ENST00000566824 NEK10Q6ZWH5 1172 aa18.96■□□□□ 0.63
CLN3-225ENST00000566824 LINC01555Q8NAE3 123 aa18.96■□□□□ 0.63
CLN3-225ENST00000566824 ANKRD49Q8WVL7 239 aa18.96■□□□□ 0.63
CLN3-225ENST00000566824 ASB11Q8WXH4 323 aa18.96■□□□□ 0.63
CLN3-225ENST00000566824 LIN37Q96GY3 246 aaPredicted RBP18.96■□□□□ 0.63
CLN3-225ENST00000566824 GPR22Q99680 433 aa18.96■□□□□ 0.63
CLN3-225ENST00000566824 TWSG1Q9GZX9 223 aa18.96■□□□□ 0.63
CLN3-225ENST00000566824 RAB33BQ9H082 229 aa18.96■□□□□ 0.63
CLN3-225ENST00000566824 EPHA6Q9UF33 1036 aa18.96■□□□□ 0.63
CLN3-225ENST00000566824 CCDC187A0A096LP49 1063 aa18.95■□□□□ 0.62
CLN3-225ENST00000566824 IGHV5-51A0A0C4DH38 117 aa18.95■□□□□ 0.62
CLN3-225ENST00000566824 C1QTNF9BB2RNN3 333 aa18.95■□□□□ 0.62
CLN3-225ENST00000566824 WISP3O95389 354 aaPredicted RBP18.95■□□□□ 0.62
CLN3-225ENST00000566824 C1QTNF9P0C862 333 aa18.95■□□□□ 0.62
CLN3-225ENST00000566824 CBSLP0DN79 551 aa18.95■□□□□ 0.62
CLN3-225ENST00000566824 ITIH1P19827 911 aa18.95■□□□□ 0.62
CLN3-225ENST00000566824 PHBP35232 272 aa18.95■□□□□ 0.62
CLN3-225ENST00000566824 CBSP35520 551 aa18.95■□□□□ 0.62
CLN3-225ENST00000566824 BMPR2Q13873 1038 aa18.95■□□□□ 0.62
CLN3-225ENST00000566824 GRTP1Q5TC63 336 aa18.95■□□□□ 0.62
CLN3-225ENST00000566824 UGT3A1Q6NUS8 523 aa18.95■□□□□ 0.62
CLN3-225ENST00000566824 RAB11FIP2Q7L804 512 aa18.95■□□□□ 0.62
CLN3-225ENST00000566824 OOSP2Q86WS3 158 aa18.95■□□□□ 0.62
CLN3-225ENST00000566824 PLXDC1Q8IUK5 500 aa18.95■□□□□ 0.62
CLN3-225ENST00000566824 EIF1ADQ8N9N8 165 aaKnown RBP18.95■□□□□ 0.62
CLN3-225ENST00000566824 FLVCR1-AS1Q8TAF5 88 aa18.95■□□□□ 0.62
CLN3-225ENST00000566824 CYTH2Q99418 400 aa18.95■□□□□ 0.62
CLN3-225ENST00000566824 MAP3K3Q99759 626 aa18.95■□□□□ 0.62
CLN3-225ENST00000566824 DPYSL5Q9BPU6 564 aa18.95■□□□□ 0.62
CLN3-225ENST00000566824 OCIAD1Q9NX40 245 aa18.95■□□□□ 0.62
CLN3-225ENST00000566824 TXNDC16Q9P2K2 825 aa18.95■□□□□ 0.62
CLN3-225ENST00000566824 LOXL2Q9Y4K0 774 aa18.95■□□□□ 0.62
CLN3-225ENST00000566824 PCM1Q15154 2024 aa18.94■□□□□ 0.62
CLN3-225ENST00000566824 TPRP12270 2363 aaKnown RBP18.94■□□□□ 0.62
CLN3-225ENST00000566824 GSAPA4D1B5 854 aa18.94■□□□□ 0.62
CLN3-225ENST00000566824 GFYI3L273 518 aa18.94■□□□□ 0.62
CLN3-225ENST00000566824 PHGDHO43175 533 aaKnown RBP18.94■□□□□ 0.62
CLN3-225ENST00000566824 RIPK2O43353 540 aa18.94■□□□□ 0.62
CLN3-225ENST00000566824 CHRM5P08912 532 aaPredicted RBP18.94■□□□□ 0.62
CLN3-225ENST00000566824 ENO3P13929 434 aaPredicted RBP18.94■□□□□ 0.62
CLN3-225ENST00000566824 SEPHS1P49903 392 aa18.94■□□□□ 0.62
CLN3-225ENST00000566824 GABREP78334 506 aa18.94■□□□□ 0.62
CLN3-225ENST00000566824 NAB1Q13506 487 aa18.94■□□□□ 0.62
CLN3-225ENST00000566824 CMC1Q7Z7K0 106 aa18.94■□□□□ 0.62
CLN3-225ENST00000566824 TRIM73Q86UV7 250 aa18.94■□□□□ 0.62
Retrieved 100 of 20,778 RNA–protein pairs in 274.7 ms