RNA–Protein interactions for RNA: ENST00000565778.6

CLN3-219, Transcript of CLN3, battenin, humanhuman

TSL 1 (best)

Gene CLN3, Length 688 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-219ENST00000565778 SLC38A9Q8NBW4 561 aa20.07■□□□□ 0.8
CLN3-219ENST00000565778 N4BP2L2Q92802 583 aaPredicted RBP20.07■□□□□ 0.8
CLN3-219ENST00000565778 MS4A14Q96JA4 679 aa20.07■□□□□ 0.8
CLN3-219ENST00000565778 SLC7A5P2Q9GIP4 190 aa20.07■□□□□ 0.8
CLN3-219ENST00000565778 TREX1Q9NSU2 369 aa20.07■□□□□ 0.8
CLN3-219ENST00000565778 OR6C2Q9NZP2 312 aa20.07■□□□□ 0.8
CLN3-219ENST00000565778 PLAGL1Q9UM63 463 aa20.07■□□□□ 0.8
CLN3-219ENST00000565778 POLHQ9Y253 713 aa20.07■□□□□ 0.8
CLN3-219ENST00000565778 FARSAQ9Y285 508 aaKnown RBP20.07■□□□□ 0.8
CLN3-219ENST00000565778 TCRBV7S3A2A0A539 114 aa20.06■□□□□ 0.8
CLN3-219ENST00000565778 ISM1B1AKI9 464 aa20.06■□□□□ 0.8
CLN3-219ENST00000565778 VAPBO95292 243 aa20.06■□□□□ 0.8
CLN3-219ENST00000565778 RECKO95980 971 aa20.06■□□□□ 0.8
CLN3-219ENST00000565778 KRT14P02533 472 aa20.06■□□□□ 0.8
CLN3-219ENST00000565778 CHRM5P08912 532 aaPredicted RBP20.06■□□□□ 0.8
CLN3-219ENST00000565778 TPBGLP0DKB5 382 aa20.06■□□□□ 0.8
CLN3-219ENST00000565778 PTPN4P29074 926 aa20.06■□□□□ 0.8
CLN3-219ENST00000565778 GPS2Q13227 327 aa20.06■□□□□ 0.8
CLN3-219ENST00000565778 SDCCAG8Q86SQ7 713 aaPredicted RBP20.06■□□□□ 0.8
CLN3-219ENST00000565778 TRIM73Q86UV7 250 aa20.06■□□□□ 0.8
CLN3-219ENST00000565778 PTRH1Q86Y79 214 aaKnown RBP20.06■□□□□ 0.8
CLN3-219ENST00000565778 VRK3Q8IV63 474 aa20.06■□□□□ 0.8
CLN3-219ENST00000565778 SLC22A15Q8IZD6 547 aa20.06■□□□□ 0.8
CLN3-219ENST00000565778 OR1L3Q8NH93 324 aa20.06■□□□□ 0.8
CLN3-219ENST00000565778 GSDMBQ8TAX9 411 aa20.06■□□□□ 0.8
CLN3-219ENST00000565778 LKAAEAR1Q8TD35 194 aa20.06■□□□□ 0.8
CLN3-219ENST00000565778 MFSD3Q96ES6 412 aa20.06■□□□□ 0.8
CLN3-219ENST00000565778 OR2A14Q96R47 310 aa20.06■□□□□ 0.8
CLN3-219ENST00000565778 RUFY1Q96T51 708 aa20.06■□□□□ 0.8
CLN3-219ENST00000565778 KIFC1Q9BW19 673 aa20.06■□□□□ 0.8
CLN3-219ENST00000565778 ACTL8Q9H568 366 aa20.06■□□□□ 0.8
CLN3-219ENST00000565778 SYBUQ9NX95 663 aa20.06■□□□□ 0.8
CLN3-219ENST00000565778 SPHK1Q9NYA1 384 aa20.06■□□□□ 0.8
CLN3-219ENST00000565778 KCNMB2Q9Y691 235 aa20.06■□□□□ 0.8
CLN3-219ENST00000565778 COL6A6A6NMZ7 2263 aa20.06■□□□□ 0.8
CLN3-219ENST00000565778 GCN1Q92616 2671 aaKnown RBP20.05■□□□□ 0.8
CLN3-219ENST00000565778 ZNF462Q96JM2 2506 aa20.05■□□□□ 0.8
CLN3-219ENST00000565778 MEN1O00255 615 aa20.05■□□□□ 0.8
CLN3-219ENST00000565778 GPC4O75487 556 aa20.05■□□□□ 0.8
CLN3-219ENST00000565778 UGT2B7P16662 529 aa20.05■□□□□ 0.8
CLN3-219ENST00000565778 AOAHP28039 575 aa20.05■□□□□ 0.8
CLN3-219ENST00000565778 TMED2Q15363 201 aa20.05■□□□□ 0.8
CLN3-219ENST00000565778 PLEKHS1Q5SXH7 462 aa20.05■□□□□ 0.8
CLN3-219ENST00000565778 ATG14Q6ZNE5 492 aa20.05■□□□□ 0.8
CLN3-219ENST00000565778 CDHR3Q6ZTQ4 885 aa20.05■□□□□ 0.8
CLN3-219ENST00000565778 TMEM135Q86UB9 458 aa20.05■□□□□ 0.8
CLN3-219ENST00000565778 RASGEF1CQ8N431 466 aa20.05■□□□□ 0.8
CLN3-219ENST00000565778 ABHD17AQ96GS6 310 aa20.05■□□□□ 0.8
CLN3-219ENST00000565778 TCTN2Q96GX1 697 aa20.05■□□□□ 0.8
CLN3-219ENST00000565778 PANX3Q96QZ0 392 aa20.05■□□□□ 0.8
CLN3-219ENST00000565778 ZNF71Q9NQZ8 489 aaPredicted RBP20.05■□□□□ 0.8
CLN3-219ENST00000565778 GNPTGQ9UJJ9 305 aa20.05■□□□□ 0.8
CLN3-219ENST00000565778 CDYLQ9Y232 598 aa20.05■□□□□ 0.8
CLN3-219ENST00000565778 PIKFYVEQ9Y2I7 2098 aa20.04■□□□□ 0.8
CLN3-219ENST00000565778 PYCARD-AS1I3L0S3 204 aa20.04■□□□□ 0.8
CLN3-219ENST00000565778 KPNA5O15131 536 aa20.04■□□□□ 0.8
CLN3-219ENST00000565778 SUV39H1O43463 412 aa20.04■□□□□ 0.8
CLN3-219ENST00000565778 AVILO75366 819 aa20.04■□□□□ 0.8
CLN3-219ENST00000565778 ZIC2O95409 532 aaPredicted RBP20.04■□□□□ 0.8
CLN3-219ENST00000565778 RPN2P04844 631 aa20.04■□□□□ 0.8
CLN3-219ENST00000565778 MSL3P1P0C860 447 aa20.04■□□□□ 0.8
CLN3-219ENST00000565778 ITGA1P56199 1179 aa20.04■□□□□ 0.8
CLN3-219ENST00000565778 RPS18P62269 152 aaKnown RBP20.04■□□□□ 0.8
CLN3-219ENST00000565778 MRNIPQ6NTE8 343 aa20.04■□□□□ 0.8
CLN3-219ENST00000565778 TTC27Q6P3X3 843 aa20.04■□□□□ 0.8
CLN3-219ENST00000565778 CASC4Q6P4E1 433 aa20.04■□□□□ 0.8
CLN3-219ENST00000565778 TTC23LQ6PF05 361 aa20.04■□□□□ 0.8
CLN3-219ENST00000565778 LRRC6Q86X45 466 aa20.04■□□□□ 0.8
CLN3-219ENST00000565778 GPR135Q8IZ08 494 aa20.04■□□□□ 0.8
CLN3-219ENST00000565778 MPP5Q8N3R9 675 aa20.04■□□□□ 0.8
CLN3-219ENST00000565778 C19orf47Q8N9M1 422 aaKnown RBP20.04■□□□□ 0.8
CLN3-219ENST00000565778 C9orf43Q8TAL5 461 aaPredicted RBP20.04■□□□□ 0.8
CLN3-219ENST00000565778 SEC14L1Q92503 715 aa20.04■□□□□ 0.8
CLN3-219ENST00000565778 LRFN5Q96NI6 719 aa20.04■□□□□ 0.8
CLN3-219ENST00000565778 NAP1L3Q99457 506 aaPredicted RBP20.04■□□□□ 0.8
CLN3-219ENST00000565778 P2RY12Q9H244 342 aa20.04■□□□□ 0.8
CLN3-219ENST00000565778 CHST8Q9H2A9 424 aa20.04■□□□□ 0.8
CLN3-219ENST00000565778 ACTR5Q9H9F9 607 aaPredicted RBP20.04■□□□□ 0.8
CLN3-219ENST00000565778 GRPEL1Q9HAV7 217 aa20.04■□□□□ 0.8
CLN3-219ENST00000565778 MRM3Q9HC36 420 aaKnown RBP20.04■□□□□ 0.8
CLN3-219ENST00000565778 FAM60AQ9NP50 221 aa20.04■□□□□ 0.8
CLN3-219ENST00000565778 SOX13Q9UN79 622 aa20.04■□□□□ 0.8
CLN3-219ENST00000565778 TRBV21OR9-2A0A075B6F4 123 aaPredicted RBP20.03■□□□□ 0.8
CLN3-219ENST00000565778 GOLGA8KD6RF30 607 aa20.03■□□□□ 0.8
CLN3-219ENST00000565778 E7EQ34 232 aa20.03■□□□□ 0.8
CLN3-219ENST00000565778 GOLGA8TH3BQL2 631 aa20.03■□□□□ 0.8
CLN3-219ENST00000565778 PFDN6O15212 129 aa20.03■□□□□ 0.8
CLN3-219ENST00000565778 SLCO2B1O94956 709 aa20.03■□□□□ 0.8
CLN3-219ENST00000565778 COILP38432 576 aaPredicted RBP20.03■□□□□ 0.8
CLN3-219ENST00000565778 EIF3BP55884 814 aaKnown RBP20.03■□□□□ 0.8
CLN3-219ENST00000565778 KCNJ11Q14654 390 aa20.03■□□□□ 0.8
CLN3-219ENST00000565778 KIR2DS3Q14952 304 aa20.03■□□□□ 0.8
CLN3-219ENST00000565778 DSELQ8IZU8 1212 aa20.03■□□□□ 0.8
CLN3-219ENST00000565778 C2orf73Q8N5S3 287 aaPredicted RBP20.03■□□□□ 0.8
CLN3-219ENST00000565778 SKA2Q8WVK7 121 aaPredicted RBP20.03■□□□□ 0.8
CLN3-219ENST00000565778 CIDEBQ9UHD4 219 aa20.03■□□□□ 0.8
CLN3-219ENST00000565778 MAN2B2Q9Y2E5 1009 aa20.03■□□□□ 0.8
CLN3-219ENST00000565778 A0A0J9YY10 115 aa20.02■□□□□ 0.8
CLN3-219ENST00000565778 ZSCAN12O43309 604 aa20.02■□□□□ 0.8
CLN3-219ENST00000565778 ZNF749O43361 778 aa20.02■□□□□ 0.8
Retrieved 100 of 20,778 RNA–protein pairs in 31.8 ms