RNA–Protein interactions for RNA: ENST00000561381.5

USP3-220, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 2

Gene USP3, Length 979 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-220ENST00000561381 NUDT9Q9BW91 350 aa11.26□□□□□ -0.61
USP3-220ENST00000561381 VPS37BQ9H9H4 285 aa11.26□□□□□ -0.61
USP3-220ENST00000561381 SPHK1Q9NYA1 384 aa11.26□□□□□ -0.61
USP3-220ENST00000561381 SERTAD3Q9UJW9 196 aa11.26□□□□□ -0.61
USP3-220ENST00000561381 CCDC88CQ9P219 2028 aa11.26□□□□□ -0.61
USP3-220ENST00000561381 MROH6A6NGR9 719 aa11.25□□□□□ -0.61
USP3-220ENST00000561381 E7EQ34 232 aa11.25□□□□□ -0.61
USP3-220ENST00000561381 CEACAM4O75871 244 aa11.25□□□□□ -0.61
USP3-220ENST00000561381 SORBS2O94875 1100 aaKnown RBP11.25□□□□□ -0.61
USP3-220ENST00000561381 FTCDO95954 541 aa11.25□□□□□ -0.61
USP3-220ENST00000561381 UGT2B7P16662 529 aa11.25□□□□□ -0.61
USP3-220ENST00000561381 ACADLP28330 430 aa11.25□□□□□ -0.61
USP3-220ENST00000561381 CETN2P41208 172 aa11.25□□□□□ -0.61
USP3-220ENST00000561381 VAV2P52735 878 aa11.25□□□□□ -0.61
USP3-220ENST00000561381 FOXL2P58012 376 aa11.25□□□□□ -0.61
USP3-220ENST00000561381 RPA4Q13156 261 aa11.25□□□□□ -0.61
USP3-220ENST00000561381 KLF1Q13351 362 aaPredicted RBP11.25□□□□□ -0.61
USP3-220ENST00000561381 RAPSNQ13702 412 aa11.25□□□□□ -0.61
USP3-220ENST00000561381 ATP1A4Q13733 1029 aa11.25□□□□□ -0.61
USP3-220ENST00000561381 NCF4Q15080 339 aa11.25□□□□□ -0.61
USP3-220ENST00000561381 ZNF385CQ66K41 422 aaPredicted RBP11.25□□□□□ -0.61
USP3-220ENST00000561381 HIST2H2BCQ6DN03 193 aa11.25□□□□□ -0.61
USP3-220ENST00000561381 SPESP1Q6UW49 350 aa11.25□□□□□ -0.61
USP3-220ENST00000561381 UNC5AQ6ZN44 842 aa11.25□□□□□ -0.61
USP3-220ENST00000561381 TMEM151BQ8IW70 566 aa11.25□□□□□ -0.61
USP3-220ENST00000561381 C19orf47Q8N9M1 422 aaKnown RBP11.25□□□□□ -0.61
USP3-220ENST00000561381 FLVCR1-AS1Q8TAF5 88 aa11.25□□□□□ -0.61
USP3-220ENST00000561381 SLC35B2Q8TB61 432 aa11.25□□□□□ -0.61
USP3-220ENST00000561381 ELMO1Q92556 727 aa11.25□□□□□ -0.61
USP3-220ENST00000561381 CALR3Q96L12 384 aaKnown RBP11.25□□□□□ -0.61
USP3-220ENST00000561381 OR2A14Q96R47 310 aa11.25□□□□□ -0.61
USP3-220ENST00000561381 SLC7A5P2Q9GIP4 190 aa11.25□□□□□ -0.61
USP3-220ENST00000561381 SPRTNQ9H040 489 aaPredicted RBP11.25□□□□□ -0.61
USP3-220ENST00000561381 LRRC40Q9H9A6 602 aa11.25□□□□□ -0.61
USP3-220ENST00000561381 SYTL2Q9HCH5 934 aa11.25□□□□□ -0.61
USP3-220ENST00000561381 AMFRQ9UKV5 643 aa11.25□□□□□ -0.61
USP3-220ENST00000561381 PLAGL1Q9UM63 463 aa11.25□□□□□ -0.61
USP3-220ENST00000561381 ASF1AQ9Y294 204 aa11.25□□□□□ -0.61
USP3-220ENST00000561381 ICE1Q9Y2F5 2266 aa11.25□□□□□ -0.61
USP3-220ENST00000561381 USP9XQ93008 2570 aaPredicted RBP11.24□□□□□ -0.61
USP3-220ENST00000561381 SNRNP200O75643 2136 aaKnown RBP11.24□□□□□ -0.61
USP3-220ENST00000561381 RP1L1Q8IWN7 2480 aaPredicted RBP11.24□□□□□ -0.61
USP3-220ENST00000561381 CCDC162PA2VCL2 907 aa11.24□□□□□ -0.61
USP3-220ENST00000561381 H3BMH7 237 aa11.24□□□□□ -0.61
USP3-220ENST00000561381 OR1I1O60431 355 aa11.24□□□□□ -0.61
USP3-220ENST00000561381 VPS4BO75351 444 aa11.24□□□□□ -0.61
USP3-220ENST00000561381 AP2A2O94973 939 aa11.24□□□□□ -0.61
USP3-220ENST00000561381 IPO7O95373 1038 aaKnown RBP11.24□□□□□ -0.61
USP3-220ENST00000561381 AP2A1O95782 977 aa11.24□□□□□ -0.61
USP3-220ENST00000561381 PTMAP06454 111 aaKnown RBP11.24□□□□□ -0.61
USP3-220ENST00000561381 CHRM5P08912 532 aaPredicted RBP11.24□□□□□ -0.61
USP3-220ENST00000561381 CBSLP0DN79 551 aa11.24□□□□□ -0.61
USP3-220ENST00000561381 PSMA3P25788 255 aa11.24□□□□□ -0.61
USP3-220ENST00000561381 MSNP26038 577 aaKnown RBP11.24□□□□□ -0.61
USP3-220ENST00000561381 FOXN2P32314 431 aa11.24□□□□□ -0.61
USP3-220ENST00000561381 CBSP35520 551 aa11.24□□□□□ -0.61
USP3-220ENST00000561381 GABRA4P48169 554 aa11.24□□□□□ -0.61
USP3-220ENST00000561381 C1orf189Q5VU69 101 aa11.24□□□□□ -0.61
USP3-220ENST00000561381 ZNF449Q6P9G9 518 aa11.24□□□□□ -0.61
USP3-220ENST00000561381 PEX26Q7Z412 305 aa11.24□□□□□ -0.61
USP3-220ENST00000561381 FAM20CQ8IXL6 584 aa11.24□□□□□ -0.61
USP3-220ENST00000561381 RBMXL3Q8N7X1 1067 aaKnown RBP11.24□□□□□ -0.61
USP3-220ENST00000561381 Q8NA96 180 aa11.24□□□□□ -0.61
USP3-220ENST00000561381 OR52K1Q8NGK4 314 aa11.24□□□□□ -0.61
USP3-220ENST00000561381 ATG4AQ8WYN0 398 aa11.24□□□□□ -0.61
USP3-220ENST00000561381 LRRC45Q96CN5 670 aa11.24□□□□□ -0.61
USP3-220ENST00000561381 IMPACTQ9P2X3 320 aa11.24□□□□□ -0.61
USP3-220ENST00000561381 SLC2A6Q9UGQ3 507 aa11.24□□□□□ -0.61
USP3-220ENST00000561381 VPS4AQ9UN37 437 aa11.24□□□□□ -0.61
USP3-220ENST00000561381 TDRKHQ9Y2W6 561 aaKnown RBP11.24□□□□□ -0.61
USP3-220ENST00000561381 ZNF451Q9Y4E5 1061 aa11.24□□□□□ -0.61
USP3-220ENST00000561381 MAP4K5Q9Y4K4 846 aa11.24□□□□□ -0.61
USP3-220ENST00000561381 ESPL1Q14674 2120 aa11.24□□□□□ -0.61
USP3-220ENST00000561381 USP9YO00507 2555 aaPredicted RBP11.23□□□□□ -0.61
USP3-220ENST00000561381 SLC5A10A0PJK1 596 aa11.23□□□□□ -0.61
USP3-220ENST00000561381 GOLGA6L9A6NEM1 432 aa11.23□□□□□ -0.61
USP3-220ENST00000561381 C9J4A7 227 aa11.23□□□□□ -0.61
USP3-220ENST00000561381 MASP2O00187 686 aa11.23□□□□□ -0.61
USP3-220ENST00000561381 LIN7AO14910 233 aaPredicted RBP11.23□□□□□ -0.61
USP3-220ENST00000561381 KLF7O75840 302 aaPredicted RBP11.23□□□□□ -0.61
USP3-220ENST00000561381 OR2B3O76000 313 aa11.23□□□□□ -0.61
USP3-220ENST00000561381 GSTM1P09488 218 aa11.23□□□□□ -0.61
USP3-220ENST00000561381 RNF224P0DH78 156 aa11.23□□□□□ -0.61
USP3-220ENST00000561381 PEBP1P30086 187 aaKnown RBP11.23□□□□□ -0.61
USP3-220ENST00000561381 OTX2P32243 289 aa11.23□□□□□ -0.61
USP3-220ENST00000561381 SHMT2P34897 504 aa11.23□□□□□ -0.61
USP3-220ENST00000561381 GRIA1P42261 906 aa11.23□□□□□ -0.61
USP3-220ENST00000561381 NSG1P42857 185 aa11.23□□□□□ -0.61
USP3-220ENST00000561381 CSE1LP55060 971 aaKnown RBP11.23□□□□□ -0.61
USP3-220ENST00000561381 GSTM4Q03013 218 aa11.23□□□□□ -0.61
USP3-220ENST00000561381 ITIH4Q14624 930 aa11.23□□□□□ -0.61
USP3-220ENST00000561381 SLC9A5Q14940 896 aa11.23□□□□□ -0.61
USP3-220ENST00000561381 INPP5JQ15735 1006 aaPredicted RBP11.23□□□□□ -0.61
USP3-220ENST00000561381 P3H1Q32P28 736 aa11.23□□□□□ -0.61
USP3-220ENST00000561381 MLIPQ5VWP3 458 aa11.23□□□□□ -0.61
USP3-220ENST00000561381 JMJD6Q6NYC1 403 aaPredicted RBP11.23□□□□□ -0.61
USP3-220ENST00000561381 KIAA1328Q86T90 577 aa11.23□□□□□ -0.61
USP3-220ENST00000561381 PRUNE1Q86TP1 453 aa11.23□□□□□ -0.61
USP3-220ENST00000561381 HOOK3Q86VS8 718 aa11.23□□□□□ -0.61
USP3-220ENST00000561381 TMEM102Q8N9M5 508 aaPredicted RBP11.23□□□□□ -0.61
Retrieved 100 of 20,778 RNA–protein pairs in 37.5 ms