RNA–Protein interactions for RNA: ENST00000560467.1

LDLR-212, Transcript of low density lipoprotein receptor, humanhuman

TSL 3

Gene LDLR, Length 928 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-212ENST00000560467 ITIH1P19827 911 aa11.54□□□□□ -0.56
LDLR-212ENST00000560467 CD9P21926 228 aa11.54□□□□□ -0.56
LDLR-212ENST00000560467 GABRB3P28472 473 aa11.54□□□□□ -0.56
LDLR-212ENST00000560467 CDKN1CP49918 316 aaPredicted RBP11.54□□□□□ -0.56
LDLR-212ENST00000560467 SLC18A1P54219 525 aa11.54□□□□□ -0.56
LDLR-212ENST00000560467 IL2P60568 153 aa11.54□□□□□ -0.56
LDLR-212ENST00000560467 TMEM115Q12893 351 aaPredicted RBP11.54□□□□□ -0.56
LDLR-212ENST00000560467 EIF3IQ13347 325 aaKnown RBP11.54□□□□□ -0.56
LDLR-212ENST00000560467 SEMA3AQ14563 771 aa11.54□□□□□ -0.56
LDLR-212ENST00000560467 INPP5AQ14642 412 aa11.54□□□□□ -0.56
LDLR-212ENST00000560467 ELOCQ15369 112 aa11.54□□□□□ -0.56
LDLR-212ENST00000560467 INSCQ1MX18 579 aa11.54□□□□□ -0.56
LDLR-212ENST00000560467 WSCD2Q2TBF2 565 aa11.54□□□□□ -0.56
LDLR-212ENST00000560467 LRRC8EQ6NSJ5 796 aa11.54□□□□□ -0.56
LDLR-212ENST00000560467 ENPP7Q6UWV6 458 aa11.54□□□□□ -0.56
LDLR-212ENST00000560467 RFLNAQ6ZTI6 216 aa11.54□□□□□ -0.56
LDLR-212ENST00000560467 SFTPA2Q8IWL1 248 aa11.54□□□□□ -0.56
LDLR-212ENST00000560467 PDXPQ96GD0 296 aa11.54□□□□□ -0.56
LDLR-212ENST00000560467 APOPT1Q96IL0 206 aa11.54□□□□□ -0.56
LDLR-212ENST00000560467 SCYL1Q96KG9 808 aa11.54□□□□□ -0.56
LDLR-212ENST00000560467 PAIP2Q9BPZ3 127 aaKnown RBP11.54□□□□□ -0.56
LDLR-212ENST00000560467 LRRN3Q9H3W5 708 aa11.54□□□□□ -0.56
LDLR-212ENST00000560467 NMRAL1Q9HBL8 299 aa11.54□□□□□ -0.56
LDLR-212ENST00000560467 SARS2Q9NP81 518 aaKnown RBP11.54□□□□□ -0.56
LDLR-212ENST00000560467 STARD5Q9NSY2 213 aa11.54□□□□□ -0.56
LDLR-212ENST00000560467 SPATS2LQ9NUQ6 558 aaKnown RBP11.54□□□□□ -0.56
LDLR-212ENST00000560467 PCMTD2Q9NV79 361 aa11.54□□□□□ -0.56
LDLR-212ENST00000560467 EURLQ9NYK6 297 aa11.54□□□□□ -0.56
LDLR-212ENST00000560467 FOXJ2Q9P0K8 574 aa11.54□□□□□ -0.56
LDLR-212ENST00000560467 KLHL42Q9P2K6 505 aa11.54□□□□□ -0.56
LDLR-212ENST00000560467 KLQ9UEF7 1012 aa11.54□□□□□ -0.56
LDLR-212ENST00000560467 IL17BQ9UHF5 180 aa11.54□□□□□ -0.56
LDLR-212ENST00000560467 ACSL6Q9UKU0 697 aa11.54□□□□□ -0.56
LDLR-212ENST00000560467 OR1A2Q9Y585 309 aa11.54□□□□□ -0.56
LDLR-212ENST00000560467 PCDHGA4Q9Y5G9 962 aa11.54□□□□□ -0.56
LDLR-212ENST00000560467 PRAMEF33A0A0G2JMD5 474 aa11.53□□□□□ -0.56
LDLR-212ENST00000560467 TMEM120BA0PK00 339 aa11.53□□□□□ -0.56
LDLR-212ENST00000560467 CCDC189A1A4V9 331 aa11.53□□□□□ -0.56
LDLR-212ENST00000560467 GAPDHSO14556 408 aaPredicted RBP11.53□□□□□ -0.56
LDLR-212ENST00000560467 PRPF4O43172 522 aaKnown RBP eCLIP11.53□□□□□ -0.56
LDLR-212ENST00000560467 OR1I1O60431 355 aa11.53□□□□□ -0.56
LDLR-212ENST00000560467 PRAMEF10O60809 474 aa11.53□□□□□ -0.56
LDLR-212ENST00000560467 SPAG7O75391 227 aa11.53□□□□□ -0.56
LDLR-212ENST00000560467 RFPL1O75677 317 aa11.53□□□□□ -0.56
LDLR-212ENST00000560467 RASGRP1O95267 797 aa11.53□□□□□ -0.56
LDLR-212ENST00000560467 ALDOAP04075 364 aaKnown RBP11.53□□□□□ -0.56
LDLR-212ENST00000560467 RBP1P09455 135 aa11.53□□□□□ -0.56
LDLR-212ENST00000560467 JMJD7P0C870 316 aa11.53□□□□□ -0.56
LDLR-212ENST00000560467 PRSS56P0CW18 603 aa11.53□□□□□ -0.56
LDLR-212ENST00000560467 LIPCP11150 499 aa11.53□□□□□ -0.56
LDLR-212ENST00000560467 CTSEP14091 401 aa11.53□□□□□ -0.56
LDLR-212ENST00000560467 ITGB6P18564 788 aa11.53□□□□□ -0.56
LDLR-212ENST00000560467 WT1P19544 449 aaPredicted RBP11.53□□□□□ -0.56
LDLR-212ENST00000560467 CCKBRP32239 447 aa11.53□□□□□ -0.56
LDLR-212ENST00000560467 CRHR1P34998 444 aa11.53□□□□□ -0.56
LDLR-212ENST00000560467 ETV5P41161 510 aa11.53□□□□□ -0.56
LDLR-212ENST00000560467 MAPK9P45984 424 aa11.53□□□□□ -0.56
LDLR-212ENST00000560467 BLKP51451 505 aa11.53□□□□□ -0.56
LDLR-212ENST00000560467 TAS2R39P59534 338 aa11.53□□□□□ -0.56
LDLR-212ENST00000560467 SRP54P61011 504 aaKnown RBP11.53□□□□□ -0.56
LDLR-212ENST00000560467 ATP6V0D1P61421 351 aa11.53□□□□□ -0.56
LDLR-212ENST00000560467 CYP4F2P78329 520 aa11.53□□□□□ -0.56
LDLR-212ENST00000560467 PLOD1Q02809 727 aaPredicted RBP11.53□□□□□ -0.56
LDLR-212ENST00000560467 ASPHQ12797 758 aa11.53□□□□□ -0.56
LDLR-212ENST00000560467 NFATC4Q14934 902 aa11.53□□□□□ -0.56
LDLR-212ENST00000560467 CCDC153Q494R4 210 aa11.53□□□□□ -0.56
LDLR-212ENST00000560467 SYTL3Q4VX76 610 aa11.53□□□□□ -0.56
LDLR-212ENST00000560467 TNFAIP8L3Q5GJ75 292 aa11.53□□□□□ -0.56
LDLR-212ENST00000560467 LVRNQ6Q4G3 990 aa11.53□□□□□ -0.56
LDLR-212ENST00000560467 ZFAND4Q86XD8 727 aa11.53□□□□□ -0.56
LDLR-212ENST00000560467 ANKRD42Q8N9B4 389 aa11.53□□□□□ -0.56
LDLR-212ENST00000560467 ASZ1Q8WWH4 475 aa11.53□□□□□ -0.56
LDLR-212ENST00000560467 TMEM74Q96NL1 305 aa11.53□□□□□ -0.56
LDLR-212ENST00000560467 ARHGAP9Q9BRR9 750 aa11.53□□□□□ -0.56
LDLR-212ENST00000560467 P2RY12Q9H244 342 aa11.53□□□□□ -0.56
LDLR-212ENST00000560467 RMI1Q9H9A7 625 aa11.53□□□□□ -0.56
LDLR-212ENST00000560467 CAB39LQ9H9S4 337 aa11.53□□□□□ -0.56
LDLR-212ENST00000560467 INTS9Q9NV88 658 aaKnown RBP11.53□□□□□ -0.56
LDLR-212ENST00000560467 RUVBL2Q9Y230 463 aaKnown RBP11.53□□□□□ -0.56
LDLR-212ENST00000560467 UBR5O95071 2799 aaPredicted RBP11.52□□□□□ -0.56
LDLR-212ENST00000560467 IGLV3-16A0A075B6K0 115 aa11.52□□□□□ -0.57
LDLR-212ENST00000560467 H3BQF6 201 aa11.52□□□□□ -0.57
LDLR-212ENST00000560467 TMX2-CTNND1H3BSU7 103 aa11.52□□□□□ -0.57
LDLR-212ENST00000560467 DNAJC6O75061 913 aa11.52□□□□□ -0.57
LDLR-212ENST00000560467 KLHL2O95198 593 aa11.52□□□□□ -0.57
LDLR-212ENST00000560467 ITGB2P05107 769 aa11.52□□□□□ -0.57
LDLR-212ENST00000560467 HOXC4P09017 264 aaPredicted RBP11.52□□□□□ -0.57
LDLR-212ENST00000560467 LTA4HP09960 611 aaKnown RBP11.52□□□□□ -0.57
LDLR-212ENST00000560467 CCDC166P0CW27 439 aa11.52□□□□□ -0.57
LDLR-212ENST00000560467 MYCLP1P12525 358 aaPredicted RBP11.52□□□□□ -0.57
LDLR-212ENST00000560467 TAC1P20366 129 aa11.52□□□□□ -0.57
LDLR-212ENST00000560467 FDXRP22570 491 aa11.52□□□□□ -0.57
LDLR-212ENST00000560467 SLC18A2Q05940 514 aa11.52□□□□□ -0.57
LDLR-212ENST00000560467 TBR1Q16650 682 aa11.52□□□□□ -0.57
LDLR-212ENST00000560467 ZNF789Q5FWF6 425 aa11.52□□□□□ -0.57
LDLR-212ENST00000560467 MANEAQ5SRI9 462 aa11.52□□□□□ -0.57
LDLR-212ENST00000560467 RBM20Q5T481 1227 aaKnown RBP11.52□□□□□ -0.57
LDLR-212ENST00000560467 DET1Q7L5Y6 550 aa11.52□□□□□ -0.57
LDLR-212ENST00000560467 TMPRSS9Q7Z410 1059 aa11.52□□□□□ -0.57
LDLR-212ENST00000560467 SPRED1Q7Z699 444 aa11.52□□□□□ -0.57
Retrieved 100 of 20,778 RNA–protein pairs in 50.6 ms