RNA–Protein interactions for RNA: ENST00000553619.1

VTI1B-202, Transcript of vesicle transport through interaction with t-SNAREs 1B, humanhuman

TSL 2

Gene VTI1B, Length 574 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VTI1B-202ENST00000553619 HOXC4P09017 264 aaPredicted RBP4.93□□□□□ -1.62
VTI1B-202ENST00000553619 LTA4HP09960 611 aaKnown RBP4.93□□□□□ -1.62
VTI1B-202ENST00000553619 GPR89BP0CG08 455 aa4.93□□□□□ -1.62
VTI1B-202ENST00000553619 CBSLP0DN79 551 aa4.93□□□□□ -1.62
VTI1B-202ENST00000553619 HTR1BP28222 390 aa4.93□□□□□ -1.62
VTI1B-202ENST00000553619 GABRB3P28472 473 aa4.93□□□□□ -1.62
VTI1B-202ENST00000553619 CD6P30203 668 aa4.93□□□□□ -1.62
VTI1B-202ENST00000553619 HOXA6P31267 233 aa4.93□□□□□ -1.62
VTI1B-202ENST00000553619 AKT1P31749 480 aa4.93□□□□□ -1.62
VTI1B-202ENST00000553619 AKT2P31751 481 aa4.93□□□□□ -1.62
VTI1B-202ENST00000553619 HPDP32754 393 aaPredicted RBP4.93□□□□□ -1.62
VTI1B-202ENST00000553619 CBSP35520 551 aa4.93□□□□□ -1.62
VTI1B-202ENST00000553619 MAPK9P45984 424 aa4.93□□□□□ -1.62
VTI1B-202ENST00000553619 TPMTP51580 245 aa4.93□□□□□ -1.62
VTI1B-202ENST00000553619 CCR5P51681 352 aa4.93□□□□□ -1.62
VTI1B-202ENST00000553619 AFF3P51826 1226 aaKnown RBP4.93□□□□□ -1.62
VTI1B-202ENST00000553619 PRKAA2P54646 552 aa4.93□□□□□ -1.62
VTI1B-202ENST00000553619 ERVFRD-1P60508 538 aa4.93□□□□□ -1.62
VTI1B-202ENST00000553619 IL2P60568 153 aa4.93□□□□□ -1.62
VTI1B-202ENST00000553619 ATP6V0D1P61421 351 aa4.93□□□□□ -1.62
VTI1B-202ENST00000553619 NAA20P61599 178 aa4.93□□□□□ -1.62
VTI1B-202ENST00000553619 YPEL5P62699 121 aa4.93□□□□□ -1.62
VTI1B-202ENST00000553619 YBX1P67809 324 aaKnown RBP4.93□□□□□ -1.62
VTI1B-202ENST00000553619 MPP1Q00013 466 aa4.93□□□□□ -1.62
VTI1B-202ENST00000553619 TMEM115Q12893 351 aaPredicted RBP4.93□□□□□ -1.62
VTI1B-202ENST00000553619 EFTUD2Q15029 972 aaKnown RBP eCLIP4.93□□□□□ -1.62
VTI1B-202ENST00000553619 ACAP2Q15057 778 aa4.93□□□□□ -1.62
VTI1B-202ENST00000553619 PTPRRQ15256 657 aa4.93□□□□□ -1.62
VTI1B-202ENST00000553619 ATP13A5Q4VNC0 1218 aa4.93□□□□□ -1.62
VTI1B-202ENST00000553619 LRRC73Q5JTD7 316 aa4.93□□□□□ -1.62
VTI1B-202ENST00000553619 PLEKHS1Q5SXH7 462 aa4.93□□□□□ -1.62
VTI1B-202ENST00000553619 UBAP2Q5T6F2 1119 aaKnown RBP4.93□□□□□ -1.62
VTI1B-202ENST00000553619 AGBL4Q5VU57 503 aa4.93□□□□□ -1.62
VTI1B-202ENST00000553619 PNCKQ6P2M8 343 aa4.93□□□□□ -1.62
VTI1B-202ENST00000553619 MACC1Q6ZN28 852 aa4.93□□□□□ -1.62
VTI1B-202ENST00000553619 C11orf74Q86VG3 221 aa4.93□□□□□ -1.62
VTI1B-202ENST00000553619 TRIM69Q86WT6 500 aa4.93□□□□□ -1.62
VTI1B-202ENST00000553619 DCP2Q8IU60 420 aaKnown RBP4.93□□□□□ -1.62
VTI1B-202ENST00000553619 AADATQ8N5Z0 425 aa4.93□□□□□ -1.62
VTI1B-202ENST00000553619 BANPQ8N9N5 519 aa4.93□□□□□ -1.62
VTI1B-202ENST00000553619 CCDC63Q8NA47 563 aa4.93□□□□□ -1.62
VTI1B-202ENST00000553619 DDHD1Q8NEL9 900 aa4.93□□□□□ -1.62
VTI1B-202ENST00000553619 LPGAT1Q92604 370 aa4.93□□□□□ -1.62
VTI1B-202ENST00000553619 KCNJ9Q92806 393 aa4.93□□□□□ -1.62
VTI1B-202ENST00000553619 SCAMP4Q969E2 229 aa4.93□□□□□ -1.62
VTI1B-202ENST00000553619 VOPP1Q96AW1 172 aa4.93□□□□□ -1.62
VTI1B-202ENST00000553619 SKA1Q96BD8 255 aa4.93□□□□□ -1.62
VTI1B-202ENST00000553619 CCDC126Q96EE4 140 aa4.93□□□□□ -1.62
VTI1B-202ENST00000553619 APOPT1Q96IL0 206 aa4.93□□□□□ -1.62
VTI1B-202ENST00000553619 HIC2Q96JB3 615 aa4.93□□□□□ -1.62
VTI1B-202ENST00000553619 SCYL1Q96KG9 808 aa4.93□□□□□ -1.62
VTI1B-202ENST00000553619 SMIM14Q96QK8 99 aa4.93□□□□□ -1.62
VTI1B-202ENST00000553619 MCMBPQ9BTE3 642 aa4.93□□□□□ -1.62
VTI1B-202ENST00000553619 TRIM54Q9BYV2 358 aa4.93□□□□□ -1.62
VTI1B-202ENST00000553619 SLC13A1Q9BZW2 595 aa4.93□□□□□ -1.62
VTI1B-202ENST00000553619 VPS11Q9H270 941 aa4.93□□□□□ -1.62
VTI1B-202ENST00000553619 FAM96AQ9H5X1 160 aa4.93□□□□□ -1.62
VTI1B-202ENST00000553619 RMI1Q9H9A7 625 aa4.93□□□□□ -1.62
VTI1B-202ENST00000553619 CD248Q9HCU0 757 aa4.93□□□□□ -1.62
VTI1B-202ENST00000553619 SNX15Q9NRS6 342 aa4.93□□□□□ -1.62
VTI1B-202ENST00000553619 SPATS2LQ9NUQ6 558 aaKnown RBP4.93□□□□□ -1.62
VTI1B-202ENST00000553619 MKS1Q9NXB0 559 aa4.93□□□□□ -1.62
VTI1B-202ENST00000553619 WSB2Q9NYS7 404 aaPredicted RBP4.93□□□□□ -1.62
VTI1B-202ENST00000553619 CAMSAP3Q9P1Y5 1249 aaPredicted RBP4.93□□□□□ -1.62
VTI1B-202ENST00000553619 USP36Q9P275 1121 aaKnown RBP4.93□□□□□ -1.62
VTI1B-202ENST00000553619 MARCH4Q9P2E8 410 aaPredicted RBP4.93□□□□□ -1.62
VTI1B-202ENST00000553619 CTNNAL1Q9UBT7 734 aa4.93□□□□□ -1.62
VTI1B-202ENST00000553619 CD84Q9UIB8 345 aa4.93□□□□□ -1.62
VTI1B-202ENST00000553619 TRMT6Q9UJA5 497 aaKnown RBP4.93□□□□□ -1.62
VTI1B-202ENST00000553619 TMCO1Q9UM00 188 aa4.93□□□□□ -1.62
VTI1B-202ENST00000553619 DMTF1Q9Y222 760 aa4.93□□□□□ -1.62
VTI1B-202ENST00000553619 RUVBL2Q9Y230 463 aaKnown RBP4.93□□□□□ -1.62
VTI1B-202ENST00000553619 PLLPQ9Y342 182 aa4.93□□□□□ -1.62
VTI1B-202ENST00000553619 DHRS7Q9Y394 339 aa4.93□□□□□ -1.62
VTI1B-202ENST00000553619 PSAT1Q9Y617 370 aa4.93□□□□□ -1.62
VTI1B-202ENST00000553619 PIKFYVEQ9Y2I7 2098 aa4.93□□□□□ -1.62
VTI1B-202ENST00000553619 NUMA1Q14980 2115 aa4.93□□□□□ -1.62
VTI1B-202ENST00000553619 LRRK1Q38SD2 2015 aa4.92□□□□□ -1.62
VTI1B-202ENST00000553619 IGLV3-16A0A075B6K0 115 aa4.92□□□□□ -1.62
VTI1B-202ENST00000553619 A0A0U1RQS6 177 aa4.92□□□□□ -1.62
VTI1B-202ENST00000553619 A0A1W2PQU0 124 aa4.92□□□□□ -1.62
VTI1B-202ENST00000553619 TMEM120BA0PK00 339 aa4.92□□□□□ -1.62
VTI1B-202ENST00000553619 SYCE1LA8MT33 242 aa4.92□□□□□ -1.62
VTI1B-202ENST00000553619 PRAMEF26H0Y7S4 382 aa4.92□□□□□ -1.62
VTI1B-202ENST00000553619 H0Y8X5 98 aa4.92□□□□□ -1.62
VTI1B-202ENST00000553619 H3BQF6 201 aa4.92□□□□□ -1.62
VTI1B-202ENST00000553619 GOLGA8RI6L899 631 aa4.92□□□□□ -1.62
VTI1B-202ENST00000553619 PLK4O00444 970 aa4.92□□□□□ -1.62
VTI1B-202ENST00000553619 CCL22O00626 93 aa4.92□□□□□ -1.62
VTI1B-202ENST00000553619 TPP1O14773 563 aa4.92□□□□□ -1.62
VTI1B-202ENST00000553619 KMOO15229 486 aa4.92□□□□□ -1.62
VTI1B-202ENST00000553619 POLR3GO15318 223 aaPredicted RBP4.92□□□□□ -1.62
VTI1B-202ENST00000553619 BIRC5O15392 142 aa4.92□□□□□ -1.62
VTI1B-202ENST00000553619 LAMTOR5O43504 91 aa4.92□□□□□ -1.62
VTI1B-202ENST00000553619 TYROBPO43914 113 aa4.92□□□□□ -1.62
VTI1B-202ENST00000553619 SPAG7O75391 227 aa4.92□□□□□ -1.62
VTI1B-202ENST00000553619 PIAS1O75925 651 aa4.92□□□□□ -1.62
VTI1B-202ENST00000553619 SNUPNO95149 360 aaKnown RBP4.92□□□□□ -1.62
VTI1B-202ENST00000553619 TRIM16O95361 564 aa4.92□□□□□ -1.62
VTI1B-202ENST00000553619 SEMA4FO95754 770 aa4.92□□□□□ -1.62
Retrieved 100 of 20,778 RNA–protein pairs in 72.8 ms