RNA–Protein interactions for RNA: ENST00000553278.1

SCFD1-208, Transcript of sec1 family domain containing 1, humanhuman

TSL 2

Gene SCFD1, Length 795 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCFD1-208ENST00000553278 ZNF540Q8NDQ6 660 aa5.55□□□□□ -1.52
SCFD1-208ENST00000553278 OR5M8Q8NGP6 311 aa5.55□□□□□ -1.52
SCFD1-208ENST00000553278 VANGL1Q8TAA9 524 aaPredicted RBP5.55□□□□□ -1.52
SCFD1-208ENST00000553278 SSMEM1Q8WWF3 244 aa5.55□□□□□ -1.52
SCFD1-208ENST00000553278 CFAP36Q96G28 342 aa5.55□□□□□ -1.52
SCFD1-208ENST00000553278 ZNF560Q96MR9 790 aa5.55□□□□□ -1.52
SCFD1-208ENST00000553278 GDAP1L1Q96MZ0 367 aa5.55□□□□□ -1.52
SCFD1-208ENST00000553278 QRFPRQ96P65 431 aa5.55□□□□□ -1.52
SCFD1-208ENST00000553278 PANX3Q96QZ0 392 aa5.55□□□□□ -1.52
SCFD1-208ENST00000553278 TSPAN18Q96SJ8 248 aa5.55□□□□□ -1.52
SCFD1-208ENST00000553278 MTERF1Q99551 399 aaKnown RBP5.55□□□□□ -1.52
SCFD1-208ENST00000553278 ISCUQ9H1K1 167 aa5.55□□□□□ -1.52
SCFD1-208ENST00000553278 DNAJC4Q9NNZ3 241 aa5.55□□□□□ -1.52
SCFD1-208ENST00000553278 P4HTMQ9NXG6 502 aa5.55□□□□□ -1.52
SCFD1-208ENST00000553278 PCDHA12Q9UN75 941 aa5.55□□□□□ -1.52
SCFD1-208ENST00000553278 GPR132Q9UNW8 380 aa5.55□□□□□ -1.52
SCFD1-208ENST00000553278 CLCA3PQ9Y6N3 262 aa5.55□□□□□ -1.52
SCFD1-208ENST00000553278 TRIM64CA6NLI5 447 aa5.54□□□□□ -1.52
SCFD1-208ENST00000553278 NPIPB8E9PQR5 432 aa5.54□□□□□ -1.52
SCFD1-208ENST00000553278 SOCS6O14544 535 aa5.54□□□□□ -1.52
SCFD1-208ENST00000553278 HSF2BPO75031 334 aa5.54□□□□□ -1.52
SCFD1-208ENST00000553278 ATP9AO75110 1047 aa5.54□□□□□ -1.52
SCFD1-208ENST00000553278 CNOT3O75175 753 aaKnown RBP5.54□□□□□ -1.52
SCFD1-208ENST00000553278 CERS1P27544 350 aa5.54□□□□□ -1.52
SCFD1-208ENST00000553278 SLC26A5P58743 744 aa5.54□□□□□ -1.52
SCFD1-208ENST00000553278 EGR4Q05215 589 aa5.54□□□□□ -1.52
SCFD1-208ENST00000553278 SLC10A2Q12908 348 aaPredicted RBP5.54□□□□□ -1.52
SCFD1-208ENST00000553278 UGP2Q16851 508 aa5.54□□□□□ -1.52
SCFD1-208ENST00000553278 CTU2Q2VPK5 515 aaKnown RBP5.54□□□□□ -1.52
SCFD1-208ENST00000553278 ANKDD1AQ495B1 522 aa5.54□□□□□ -1.52
SCFD1-208ENST00000553278 LACTB2Q53H82 288 aaPredicted RBP5.54□□□□□ -1.52
SCFD1-208ENST00000553278 NEK5Q6P3R8 708 aa5.54□□□□□ -1.52
SCFD1-208ENST00000553278 ZNF782Q6ZMW2 699 aaPredicted RBP5.54□□□□□ -1.52
SCFD1-208ENST00000553278 ZNF627Q7L945 461 aa5.54□□□□□ -1.52
SCFD1-208ENST00000553278 ZNF367Q7RTV3 350 aa5.54□□□□□ -1.52
SCFD1-208ENST00000553278 ARMC9Q7Z3E5 817 aa5.54□□□□□ -1.52
SCFD1-208ENST00000553278 SPRED1Q7Z699 444 aa5.54□□□□□ -1.52
SCFD1-208ENST00000553278 MAP7D3Q8IWC1 876 aa5.54□□□□□ -1.52
SCFD1-208ENST00000553278 PPFIBP2Q8ND30 876 aa5.54□□□□□ -1.52
SCFD1-208ENST00000553278 EXOC6Q8TAG9 804 aa5.54□□□□□ -1.52
SCFD1-208ENST00000553278 SLC44A1Q8WWI5 657 aa5.54□□□□□ -1.52
SCFD1-208ENST00000553278 LPAR1Q92633 364 aa5.54□□□□□ -1.52
SCFD1-208ENST00000553278 VPS39Q96JC1 886 aa5.54□□□□□ -1.52
SCFD1-208ENST00000553278 ATG101Q9BSB4 218 aa5.54□□□□□ -1.52
SCFD1-208ENST00000553278 BTBD10Q9BSF8 475 aa5.54□□□□□ -1.52
SCFD1-208ENST00000553278 KRCC1Q9NPI7 259 aaPredicted RBP5.54□□□□□ -1.52
SCFD1-208ENST00000553278 FAM118AQ9NWS6 357 aa5.54□□□□□ -1.52
SCFD1-208ENST00000553278 YIPF1Q9Y548 306 aa5.54□□□□□ -1.52
SCFD1-208ENST00000553278 INSL6Q9Y581 213 aa5.54□□□□□ -1.52
SCFD1-208ENST00000553278 PRAG1Q86YV5 1406 aa5.54□□□□□ -1.52
SCFD1-208ENST00000553278 A0A1W2PP11 408 aa5.53□□□□□ -1.52
SCFD1-208ENST00000553278 ILVBLA1L0T0 632 aa5.53□□□□□ -1.52
SCFD1-208ENST00000553278 FAM149AA5PLN7 773 aa5.53□□□□□ -1.52
SCFD1-208ENST00000553278 C15orf62A8K5M9 175 aa5.53□□□□□ -1.52
SCFD1-208ENST00000553278 VWA5AO00534 786 aa5.53□□□□□ -1.52
SCFD1-208ENST00000553278 MT-ATP6P00846 226 aa5.53□□□□□ -1.52
SCFD1-208ENST00000553278 LDLRP01130 860 aa5.53□□□□□ -1.52
SCFD1-208ENST00000553278 SERPING1P05155 500 aa5.53□□□□□ -1.52
SCFD1-208ENST00000553278 CYP1A2P05177 515 aa5.53□□□□□ -1.52
SCFD1-208ENST00000553278 ANKRD34CP0C6C1 535 aa5.53□□□□□ -1.52
SCFD1-208ENST00000553278 SFNP31947 248 aa5.53□□□□□ -1.52
SCFD1-208ENST00000553278 ASMTP46597 345 aa5.53□□□□□ -1.52
SCFD1-208ENST00000553278 CDX1P47902 265 aaPredicted RBP5.53□□□□□ -1.52
SCFD1-208ENST00000553278 HTR6P50406 440 aa5.53□□□□□ -1.52
SCFD1-208ENST00000553278 ARHGAP1Q07960 439 aa5.53□□□□□ -1.52
SCFD1-208ENST00000553278 MTX1Q13505 466 aa5.53□□□□□ -1.52
SCFD1-208ENST00000553278 WSCD2Q2TBF2 565 aa5.53□□□□□ -1.52
SCFD1-208ENST00000553278 CCDC40Q4G0X9 1142 aa5.53□□□□□ -1.52
SCFD1-208ENST00000553278 OTUD1Q5VV17 481 aaPredicted RBP5.53□□□□□ -1.52
SCFD1-208ENST00000553278 KCTD11Q693B1 232 aa5.53□□□□□ -1.52
SCFD1-208ENST00000553278 ISLR2Q6UXK2 745 aa5.53□□□□□ -1.52
SCFD1-208ENST00000553278 ZNF517Q6ZMY9 492 aaPredicted RBP5.53□□□□□ -1.52
SCFD1-208ENST00000553278 ZNF66Q6ZN08 573 aa5.53□□□□□ -1.52
SCFD1-208ENST00000553278 Q6ZSV7 163 aa5.53□□□□□ -1.52
SCFD1-208ENST00000553278 COMMD2Q86X83 199 aa5.53□□□□□ -1.52
SCFD1-208ENST00000553278 CNGA4Q8IV77 575 aa5.53□□□□□ -1.52
SCFD1-208ENST00000553278 FAM114A1Q8IWE2 563 aa5.53□□□□□ -1.52
SCFD1-208ENST00000553278 CHERPQ8IWX8 916 aaKnown RBP5.53□□□□□ -1.52
SCFD1-208ENST00000553278 AQP12AQ8IXF9 295 aa5.53□□□□□ -1.52
SCFD1-208ENST00000553278 KLHDC8AQ8IYD2 350 aa5.53□□□□□ -1.52
SCFD1-208ENST00000553278 ELMOD2Q8IZ81 293 aa5.53□□□□□ -1.52
SCFD1-208ENST00000553278 RNASE8Q8TDE3 154 aaKnown RBP5.53□□□□□ -1.52
SCFD1-208ENST00000553278 CKAP2Q8WWK9 683 aa5.53□□□□□ -1.52
SCFD1-208ENST00000553278 OIT3Q8WWZ8 545 aa5.53□□□□□ -1.52
SCFD1-208ENST00000553278 PROX1Q92786 737 aa5.53□□□□□ -1.52
SCFD1-208ENST00000553278 N4BP2L2Q92802 583 aaPredicted RBP5.53□□□□□ -1.52
SCFD1-208ENST00000553278 TMEM186Q96B77 213 aa5.53□□□□□ -1.52
SCFD1-208ENST00000553278 TRIM44Q96DX7 344 aaPredicted RBP5.53□□□□□ -1.52
SCFD1-208ENST00000553278 C20orf173Q96LM9 149 aa5.53□□□□□ -1.52
SCFD1-208ENST00000553278 SPATA13Q96N96 652 aa5.53□□□□□ -1.52
SCFD1-208ENST00000553278 RAD9AQ99638 391 aa5.53□□□□□ -1.52
SCFD1-208ENST00000553278 TEX13AQ9BXU3 409 aaPredicted RBP5.53□□□□□ -1.52
SCFD1-208ENST00000553278 SPRY4Q9C004 299 aa5.53□□□□□ -1.52
SCFD1-208ENST00000553278 S1PR5Q9H228 398 aa5.53□□□□□ -1.52
SCFD1-208ENST00000553278 DPH5Q9H2P9 285 aa5.53□□□□□ -1.52
SCFD1-208ENST00000553278 RWDD1Q9H446 243 aaPredicted RBP5.53□□□□□ -1.52
SCFD1-208ENST00000553278 Q9N2K0 584 aa5.53□□□□□ -1.52
SCFD1-208ENST00000553278 MIOSQ9NXC5 875 aa5.53□□□□□ -1.52
SCFD1-208ENST00000553278 SPASTQ9UBP0 616 aa5.53□□□□□ -1.52
SCFD1-208ENST00000553278 TRIM10Q9UDY6 481 aa5.53□□□□□ -1.52
Retrieved 100 of 20,778 RNA–protein pairs in 77.5 ms