RNA–Protein interactions for RNA: ENST00000549970.5

VPS29-207, Transcript of VPS29, retromer complex component, humanhuman

TSL 3 BASIC

Gene VPS29, Length 818 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-207ENST00000549970 HSPA14Q0VDF9 509 aa15.8■□□□□ 0.12
VPS29-207ENST00000549970 ZNF789Q5FWF6 425 aa15.8■□□□□ 0.12
VPS29-207ENST00000549970 AARS2Q5JTZ9 985 aaKnown RBP15.8■□□□□ 0.12
VPS29-207ENST00000549970 PLEKHS1Q5SXH7 462 aa15.8■□□□□ 0.12
VPS29-207ENST00000549970 LCN10Q6JVE6 187 aa15.8■□□□□ 0.12
VPS29-207ENST00000549970 ZNF517Q6ZMY9 492 aaPredicted RBP15.8■□□□□ 0.12
VPS29-207ENST00000549970 CDHR3Q6ZTQ4 885 aa15.8■□□□□ 0.12
VPS29-207ENST00000549970 SYVN1Q86TM6 617 aa15.8■□□□□ 0.12
VPS29-207ENST00000549970 DSELQ8IZU8 1212 aa15.8■□□□□ 0.12
VPS29-207ENST00000549970 C19orf47Q8N9M1 422 aaKnown RBP15.8■□□□□ 0.12
VPS29-207ENST00000549970 MAIP1Q8WWC4 291 aa15.8■□□□□ 0.12
VPS29-207ENST00000549970 SEC14L1Q92503 715 aa15.8■□□□□ 0.12
VPS29-207ENST00000549970 PEX13Q92968 403 aa15.8■□□□□ 0.12
VPS29-207ENST00000549970 LRFN5Q96NI6 719 aa15.8■□□□□ 0.12
VPS29-207ENST00000549970 OR2A14Q96R47 310 aa15.8■□□□□ 0.12
VPS29-207ENST00000549970 TSSK1BQ9BXA7 367 aa15.8■□□□□ 0.12
VPS29-207ENST00000549970 SLC7A5P2Q9GIP4 190 aa15.8■□□□□ 0.12
VPS29-207ENST00000549970 EPN3Q9H201 632 aa15.8■□□□□ 0.12
VPS29-207ENST00000549970 SPHK1Q9NYA1 384 aa15.8■□□□□ 0.12
VPS29-207ENST00000549970 MARCH4Q9P2E8 410 aaPredicted RBP15.8■□□□□ 0.12
VPS29-207ENST00000549970 SERTAD3Q9UJW9 196 aa15.8■□□□□ 0.12
VPS29-207ENST00000549970 FARSAQ9Y285 508 aaKnown RBP15.8■□□□□ 0.12
VPS29-207ENST00000549970 ZKSCAN5Q9Y2L8 839 aa15.8■□□□□ 0.12
VPS29-207ENST00000549970 MYO18BQ8IUG5 2567 aa15.79■□□□□ 0.12
VPS29-207ENST00000549970 E7EQ34 232 aa15.79■□□□□ 0.12
VPS29-207ENST00000549970 MKRN2OSH3BPM6 223 aa15.79■□□□□ 0.12
VPS29-207ENST00000549970 DNAJB5O75953 348 aa15.79■□□□□ 0.12
VPS29-207ENST00000549970 MSL3P1P0C860 447 aa15.79■□□□□ 0.12
VPS29-207ENST00000549970 RORAP35398 523 aa15.79■□□□□ 0.12
VPS29-207ENST00000549970 TERF1P54274 439 aa15.79■□□□□ 0.12
VPS29-207ENST00000549970 PMS2P54278 862 aa15.79■□□□□ 0.12
VPS29-207ENST00000549970 ITGA1P56199 1179 aa15.79■□□□□ 0.12
VPS29-207ENST00000549970 CCZ1BP86790 482 aa15.79■□□□□ 0.12
VPS29-207ENST00000549970 CCZ1P86791 482 aaPredicted RBP15.79■□□□□ 0.12
VPS29-207ENST00000549970 IL10RAQ13651 578 aa15.79■□□□□ 0.12
VPS29-207ENST00000549970 UGT8Q16880 541 aa15.79■□□□□ 0.12
VPS29-207ENST00000549970 DEFB110Q30KQ9 67 aa15.79■□□□□ 0.12
VPS29-207ENST00000549970 PTCHD3Q3KNS1 767 aa15.79■□□□□ 0.12
VPS29-207ENST00000549970 COLEC12Q5KU26 742 aa15.79■□□□□ 0.12
VPS29-207ENST00000549970 IZUMO3Q5VZ72 239 aa15.79■□□□□ 0.12
VPS29-207ENST00000549970 C4orf22Q6V702 233 aa15.79■□□□□ 0.12
VPS29-207ENST00000549970 VRK3Q8IV63 474 aa15.79■□□□□ 0.12
VPS29-207ENST00000549970 SYTL1Q8IYJ3 562 aa15.79■□□□□ 0.12
VPS29-207ENST00000549970 SLC22A15Q8IZD6 547 aa15.79■□□□□ 0.12
VPS29-207ENST00000549970 KRT222Q8N1A0 295 aa15.79■□□□□ 0.12
VPS29-207ENST00000549970 ENDOVQ8N8Q3 282 aaKnown RBP15.79■□□□□ 0.12
VPS29-207ENST00000549970 CFAP61Q8NHU2 1237 aa15.79■□□□□ 0.12
VPS29-207ENST00000549970 N4BP2L2Q92802 583 aaPredicted RBP15.79■□□□□ 0.12
VPS29-207ENST00000549970 SGSM3Q96HU1 749 aa15.79■□□□□ 0.12
VPS29-207ENST00000549970 CARD6Q9BX69 1037 aa15.79■□□□□ 0.12
VPS29-207ENST00000549970 AP1M1Q9BXS5 423 aa15.79■□□□□ 0.12
VPS29-207ENST00000549970 IL22Q9GZX6 179 aa15.79■□□□□ 0.12
VPS29-207ENST00000549970 FAM60AQ9NP50 221 aa15.79■□□□□ 0.12
VPS29-207ENST00000549970 PCMTD2Q9NV79 361 aa15.79■□□□□ 0.12
VPS29-207ENST00000549970 OR6C2Q9NZP2 312 aa15.79■□□□□ 0.12
VPS29-207ENST00000549970 SEC16AO15027 2179 aa15.79■□□□□ 0.12
VPS29-207ENST00000549970 FLNBO75369 2602 aaKnown RBP15.78■□□□□ 0.12
VPS29-207ENST00000549970 ISM1B1AKI9 464 aa15.78■□□□□ 0.12
VPS29-207ENST00000549970 K7EM74 188 aa15.78■□□□□ 0.12
VPS29-207ENST00000549970 PRMT5O14744 637 aaPredicted RBP15.78■□□□□ 0.12
VPS29-207ENST00000549970 CD3EAPO15446 510 aaKnown RBP15.78■□□□□ 0.12
VPS29-207ENST00000549970 ZNF749O43361 778 aa15.78■□□□□ 0.12
VPS29-207ENST00000549970 KDM1AO60341 852 aa15.78■□□□□ 0.12
VPS29-207ENST00000549970 SNRNP200O75643 2136 aaKnown RBP15.78■□□□□ 0.12
VPS29-207ENST00000549970 MGAT1P26572 445 aa15.78■□□□□ 0.12
VPS29-207ENST00000549970 NMBRP28336 390 aa15.78■□□□□ 0.12
VPS29-207ENST00000549970 TTPAP49638 278 aa15.78■□□□□ 0.12
VPS29-207ENST00000549970 ZIC1Q15915 447 aa15.78■□□□□ 0.12
VPS29-207ENST00000549970 DNAJC21Q5F1R6 531 aaKnown RBP15.78■□□□□ 0.12
VPS29-207ENST00000549970 FAM69BQ5VUD6 431 aa15.78■□□□□ 0.12
VPS29-207ENST00000549970 PTRHD1Q6GMV3 140 aaKnown RBP15.78■□□□□ 0.12
VPS29-207ENST00000549970 GPR135Q8IZ08 494 aa15.78■□□□□ 0.12
VPS29-207ENST00000549970 OTUD6BQ8N6M0 293 aa15.78■□□□□ 0.12
VPS29-207ENST00000549970 ASZ1Q8WWH4 475 aa15.78■□□□□ 0.12
VPS29-207ENST00000549970 TRIM55Q9BYV6 548 aa15.78■□□□□ 0.12
VPS29-207ENST00000549970 ASH1LQ9NR48 2969 aaKnown RBP15.78■□□□□ 0.12
VPS29-207ENST00000549970 TREX1Q9NSU2 369 aa15.78■□□□□ 0.12
VPS29-207ENST00000549970 SYBUQ9NX95 663 aa15.78■□□□□ 0.12
VPS29-207ENST00000549970 BFARQ9NZS9 450 aa15.78■□□□□ 0.12
VPS29-207ENST00000549970 CIDEBQ9UHD4 219 aa15.78■□□□□ 0.12
VPS29-207ENST00000549970 ANAPC2Q9UJX6 822 aa15.78■□□□□ 0.12
VPS29-207ENST00000549970 TLK1Q9UKI8 766 aa15.78■□□□□ 0.12
VPS29-207ENST00000549970 TTC7AQ9ULT0 858 aaPredicted RBP15.78■□□□□ 0.12
VPS29-207ENST00000549970 SNX7Q9UNH6 387 aa15.78■□□□□ 0.12
VPS29-207ENST00000549970 CDYLQ9Y232 598 aa15.78■□□□□ 0.12
VPS29-207ENST00000549970 A0A0J9YY10 115 aa15.77■□□□□ 0.12
VPS29-207ENST00000549970 HCRTR1O43613 425 aa15.77■□□□□ 0.12
VPS29-207ENST00000549970 NRDCO43847 1150 aa15.77■□□□□ 0.12
VPS29-207ENST00000549970 GPC4O75487 556 aa15.77■□□□□ 0.12
VPS29-207ENST00000549970 APOA4P06727 396 aa15.77■□□□□ 0.12
VPS29-207ENST00000549970 ATXN8OSP0DMR3 200 aa15.77■□□□□ 0.12
VPS29-207ENST00000549970 PEBP1P30086 187 aaKnown RBP15.77■□□□□ 0.12
VPS29-207ENST00000549970 CASRP41180 1078 aa15.77■□□□□ 0.12
VPS29-207ENST00000549970 NPY2RP49146 381 aa15.77■□□□□ 0.12
VPS29-207ENST00000549970 VPS41P49754 854 aa15.77■□□□□ 0.12
VPS29-207ENST00000549970 CHAF1BQ13112 559 aa15.77■□□□□ 0.12
VPS29-207ENST00000549970 TRIP13Q15645 432 aaPredicted RBP15.77■□□□□ 0.12
VPS29-207ENST00000549970 CPZQ66K79 652 aa15.77■□□□□ 0.12
VPS29-207ENST00000549970 TCTN3Q6NUS6 607 aa15.77■□□□□ 0.12
VPS29-207ENST00000549970 FAM198BQ6UWH4 519 aa15.77■□□□□ 0.12
Retrieved 100 of 20,778 RNA–protein pairs in 25.7 ms