RNA–Protein interactions for RNA: ENST00000540747.1

YBX3-209, Transcript of Y-box binding protein 3, humanhuman

TSL 5

Gene YBX3, Length 548 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
YBX3-209ENST00000540747 STX7O15400 261 aaKnown RBP7.04□□□□□ -1.28
YBX3-209ENST00000540747 ZSCAN9O15535 394 aaPredicted RBP7.04□□□□□ -1.28
YBX3-209ENST00000540747 LDB2O43679 373 aa7.04□□□□□ -1.28
YBX3-209ENST00000540747 ZG16O60844 167 aa7.04□□□□□ -1.28
YBX3-209ENST00000540747 OR2B3O76000 313 aa7.04□□□□□ -1.28
YBX3-209ENST00000540747 KRT38O76015 456 aa7.04□□□□□ -1.28
YBX3-209ENST00000540747 AGTP01019 485 aa7.04□□□□□ -1.28
YBX3-209ENST00000540747 UQCRHP07919 91 aa7.04□□□□□ -1.28
YBX3-209ENST00000540747 CD63P08962 238 aa7.04□□□□□ -1.28
YBX3-209ENST00000540747 ATP1B2P14415 290 aaPredicted RBP7.04□□□□□ -1.28
YBX3-209ENST00000540747 UGT2B7P16662 529 aa7.04□□□□□ -1.28
YBX3-209ENST00000540747 MMP11P24347 488 aa7.04□□□□□ -1.28
YBX3-209ENST00000540747 ACADLP28330 430 aa7.04□□□□□ -1.28
YBX3-209ENST00000540747 PEBP1P30086 187 aaKnown RBP7.04□□□□□ -1.28
YBX3-209ENST00000540747 ARHGAP25P42331 645 aa7.04□□□□□ -1.28
YBX3-209ENST00000540747 TDGF1P3P51864 188 aa7.04□□□□□ -1.28
YBX3-209ENST00000540747 DYNLT1P63172 113 aa7.04□□□□□ -1.28
YBX3-209ENST00000540747 TPM4P67936 248 aa7.04□□□□□ -1.28
YBX3-209ENST00000540747 DCDP81605 110 aaKnown RBP7.04□□□□□ -1.28
YBX3-209ENST00000540747 FANCCQ00597 558 aa7.04□□□□□ -1.28
YBX3-209ENST00000540747 AIMP2Q13155 320 aaKnown RBP7.04□□□□□ -1.28
YBX3-209ENST00000540747 RPA4Q13156 261 aa7.04□□□□□ -1.28
YBX3-209ENST00000540747 ELOAQ14241 798 aaKnown RBP7.04□□□□□ -1.28
YBX3-209ENST00000540747 MESDQ14696 234 aa7.04□□□□□ -1.28
YBX3-209ENST00000540747 TAF1AQ15573 450 aaPredicted RBP7.04□□□□□ -1.28
YBX3-209ENST00000540747 HIF1AQ16665 826 aa7.04□□□□□ -1.28
YBX3-209ENST00000540747 DEFB110Q30KQ9 67 aa7.04□□□□□ -1.28
YBX3-209ENST00000540747 GLIPR1L2Q4G1C9 344 aa7.04□□□□□ -1.28
YBX3-209ENST00000540747 NKAIN1Q4KMZ8 207 aa7.04□□□□□ -1.28
YBX3-209ENST00000540747 C1orf189Q5VU69 101 aa7.04□□□□□ -1.28
YBX3-209ENST00000540747 MLIPQ5VWP3 458 aa7.04□□□□□ -1.28
YBX3-209ENST00000540747 DENND5AQ6IQ26 1287 aa7.04□□□□□ -1.28
YBX3-209ENST00000540747 MICALCLQ6ZW33 695 aa7.04□□□□□ -1.28
YBX3-209ENST00000540747 COX15Q7KZN9 410 aa7.04□□□□□ -1.28
YBX3-209ENST00000540747 AMIGO1Q86WK6 493 aa7.04□□□□□ -1.28
YBX3-209ENST00000540747 RFX6Q8HWS3 928 aa7.04□□□□□ -1.28
YBX3-209ENST00000540747 GPR135Q8IZ08 494 aa7.04□□□□□ -1.28
YBX3-209ENST00000540747 DNAJC22Q8N4W6 341 aa7.04□□□□□ -1.28
YBX3-209ENST00000540747 PHC3Q8NDX5 983 aa7.04□□□□□ -1.28
YBX3-209ENST00000540747 SLC35G2Q8TBE7 412 aa7.04□□□□□ -1.28
YBX3-209ENST00000540747 COG1Q8WTW3 980 aa7.04□□□□□ -1.28
YBX3-209ENST00000540747 FAR1Q8WVX9 515 aa7.04□□□□□ -1.28
YBX3-209ENST00000540747 CTNNBL1Q8WYA6 563 aaPredicted RBP7.04□□□□□ -1.28
YBX3-209ENST00000540747 RELTQ969Z4 430 aa7.04□□□□□ -1.28
YBX3-209ENST00000540747 FKBP10Q96AY3 582 aa7.04□□□□□ -1.28
YBX3-209ENST00000540747 RNF25Q96BH1 459 aaPredicted RBP7.04□□□□□ -1.28
YBX3-209ENST00000540747 VAT1Q99536 393 aa7.04□□□□□ -1.28
YBX3-209ENST00000540747 SPSB2Q99619 263 aa7.04□□□□□ -1.28
YBX3-209ENST00000540747 AP1M1Q9BXS5 423 aa7.04□□□□□ -1.28
YBX3-209ENST00000540747 GBA3Q9H227 469 aa7.04□□□□□ -1.28
YBX3-209ENST00000540747 SLC26A1Q9H2B4 701 aa7.04□□□□□ -1.28
YBX3-209ENST00000540747 XKR8Q9H6D3 395 aa7.04□□□□□ -1.28
YBX3-209ENST00000540747 ASB8Q9H765 288 aa7.04□□□□□ -1.28
YBX3-209ENST00000540747 ATP13A2Q9NQ11 1180 aa7.04□□□□□ -1.28
YBX3-209ENST00000540747 AGPAT4Q9NRZ5 378 aa7.04□□□□□ -1.28
YBX3-209ENST00000540747 SPHK1Q9NYA1 384 aa7.04□□□□□ -1.28
YBX3-209ENST00000540747 DHCR7Q9UBM7 475 aaKnown RBP7.04□□□□□ -1.28
YBX3-209ENST00000540747 FAM8A1Q9UBU6 413 aa7.04□□□□□ -1.28
YBX3-209ENST00000540747 FBXL4Q9UKA2 621 aa7.04□□□□□ -1.28
YBX3-209ENST00000540747 SRPK3Q9UPE1 567 aa7.04□□□□□ -1.28
YBX3-209ENST00000540747 OSGIN2Q9Y236 505 aa7.04□□□□□ -1.28
YBX3-209ENST00000540747 LUC7L2Q9Y383 392 aaKnown RBP7.04□□□□□ -1.28
YBX3-209ENST00000540747 HS3ST3B1Q9Y662 390 aa7.04□□□□□ -1.28
YBX3-209ENST00000540747 PCNX1Q96RV3 2341 aa7.04□□□□□ -1.28
YBX3-209ENST00000540747 hCG_1818297A0A087WSY0 165 aa7.03□□□□□ -1.28
YBX3-209ENST00000540747 ARHGAP10A1A4S6 786 aa7.03□□□□□ -1.28
YBX3-209ENST00000540747 CCDC66A2RUB6 948 aa7.03□□□□□ -1.28
YBX3-209ENST00000540747 C5orf60A6NFR6 353 aa7.03□□□□□ -1.28
YBX3-209ENST00000540747 CST8O60676 142 aa7.03□□□□□ -1.28
YBX3-209ENST00000540747 CHRM5P08912 532 aaPredicted RBP7.03□□□□□ -1.28
YBX3-209ENST00000540747 GSTM1P09488 218 aa7.03□□□□□ -1.28
YBX3-209ENST00000540747 PSMA3P25788 255 aa7.03□□□□□ -1.28
YBX3-209ENST00000540747 CDC25BP30305 580 aa7.03□□□□□ -1.28
YBX3-209ENST00000540747 GLRBP48167 497 aa7.03□□□□□ -1.28
YBX3-209ENST00000540747 PER3P56645 1201 aa7.03□□□□□ -1.28
YBX3-209ENST00000540747 TMPRSS15P98073 1019 aa7.03□□□□□ -1.28
YBX3-209ENST00000540747 OTUD4Q01804 1114 aaKnown RBP7.03□□□□□ -1.28
YBX3-209ENST00000540747 GSTM4Q03013 218 aa7.03□□□□□ -1.28
YBX3-209ENST00000540747 Q0VFX4 171 aa7.03□□□□□ -1.28
YBX3-209ENST00000540747 OLIG2Q13516 323 aa7.03□□□□□ -1.28
YBX3-209ENST00000540747 TFDP2Q14188 446 aa7.03□□□□□ -1.28
YBX3-209ENST00000540747 PRAMEF13Q5VWM6 474 aa7.03□□□□□ -1.28
YBX3-209ENST00000540747 SP5Q6BEB4 398 aaPredicted RBP7.03□□□□□ -1.28
YBX3-209ENST00000540747 RPUSD3Q6P087 351 aaKnown RBP7.03□□□□□ -1.28
YBX3-209ENST00000540747 TLDC1Q6P9B6 456 aa7.03□□□□□ -1.28
YBX3-209ENST00000540747 KIRREL2Q6UWL6 708 aa7.03□□□□□ -1.28
YBX3-209ENST00000540747 UNC5AQ6ZN44 842 aa7.03□□□□□ -1.28
YBX3-209ENST00000540747 BZW1Q7L1Q6 419 aaKnown RBP7.03□□□□□ -1.28
YBX3-209ENST00000540747 SNX20Q7Z614 316 aa7.03□□□□□ -1.28
YBX3-209ENST00000540747 MCEMP1Q8IX19 187 aa7.03□□□□□ -1.28
YBX3-209ENST00000540747 OR13C4Q8NGS5 318 aa7.03□□□□□ -1.28
YBX3-209ENST00000540747 HEXDCQ8WVB3 486 aa7.03□□□□□ -1.28
YBX3-209ENST00000540747 CPLX3Q8WVH0 158 aa7.03□□□□□ -1.28
YBX3-209ENST00000540747 TFGQ92734 400 aaPredicted RBP7.03□□□□□ -1.28
YBX3-209ENST00000540747 TBRG4Q969Z0 631 aaKnown RBP eCLIP7.03□□□□□ -1.28
YBX3-209ENST00000540747 ULK4Q96C45 1275 aa7.03□□□□□ -1.28
YBX3-209ENST00000540747 RBM41Q96IZ5 413 aaKnown RBP7.03□□□□□ -1.28
YBX3-209ENST00000540747 ZNF285Q96NJ3 590 aa7.03□□□□□ -1.28
YBX3-209ENST00000540747 PHF12Q96QT6 1004 aa7.03□□□□□ -1.28
YBX3-209ENST00000540747 FERD3LQ96RJ6 166 aa7.03□□□□□ -1.28
Retrieved 100 of 20,778 RNA–protein pairs in 234.2 ms