RNA–Protein interactions for RNA: ENST00000539533.3

PCDHB17P-201, Transcript of protocadherin beta 17 pseudogene, humanhuman

BASIC

Gene PCDHB17P, Length 2,393 nt, Biotype transcribed unprocessed pseudogene.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PCDHB17P-201ENST00000539533 PCDHGA7Q9Y5G6 932 aa16.72■□□□□ 0.27
PCDHB17P-201ENST00000539533 CEPT1Q9Y6K0 416 aa16.72■□□□□ 0.27
PCDHB17P-201ENST00000539533 A0A1B0GTL3 188 aa16.71■□□□□ 0.27
PCDHB17P-201ENST00000539533 A0A1B0GTW7 788 aa16.71■□□□□ 0.27
PCDHB17P-201ENST00000539533 C7orf72A4D263 438 aa16.71■□□□□ 0.27
PCDHB17P-201ENST00000539533 H3BSA7 217 aa16.71■□□□□ 0.27
PCDHB17P-201ENST00000539533 SDHDO14521 159 aa16.71■□□□□ 0.27
PCDHB17P-201ENST00000539533 LZTS3O60299 673 aaPredicted RBP16.71■□□□□ 0.27
PCDHB17P-201ENST00000539533 SNX2O60749 519 aa16.71■□□□□ 0.27
PCDHB17P-201ENST00000539533 CDK14O94921 469 aa16.71■□□□□ 0.27
PCDHB17P-201ENST00000539533 SOD1P00441 154 aa16.71■□□□□ 0.27
PCDHB17P-201ENST00000539533 CDH2P19022 906 aaPredicted RBP16.71■□□□□ 0.27
PCDHB17P-201ENST00000539533 AOAHP28039 575 aa16.71■□□□□ 0.27
PCDHB17P-201ENST00000539533 HSPA14Q0VDF9 509 aa16.71■□□□□ 0.27
PCDHB17P-201ENST00000539533 CAMK2GQ13555 558 aaPredicted RBP16.71■□□□□ 0.27
PCDHB17P-201ENST00000539533 DCTN2Q13561 401 aaKnown RBP16.71■□□□□ 0.27
PCDHB17P-201ENST00000539533 PPP1R3AQ16821 1122 aa16.71■□□□□ 0.27
PCDHB17P-201ENST00000539533 C18orf21Q32NC0 220 aaPredicted RBP16.71■□□□□ 0.27
PCDHB17P-201ENST00000539533 TTLL9Q3SXZ7 439 aa16.71■□□□□ 0.27
PCDHB17P-201ENST00000539533 TMEM52BQ4KMG9 183 aa16.71■□□□□ 0.27
PCDHB17P-201ENST00000539533 IER5LQ5T953 404 aa16.71■□□□□ 0.27
PCDHB17P-201ENST00000539533 FAM46CQ5VWP2 391 aa16.71■□□□□ 0.27
PCDHB17P-201ENST00000539533 KIAA1211LQ6NV74 962 aa16.71■□□□□ 0.27
PCDHB17P-201ENST00000539533 FRA10AC1Q70Z53 315 aa16.71■□□□□ 0.27
PCDHB17P-201ENST00000539533 CYP2U1Q7Z449 544 aa16.71■□□□□ 0.27
PCDHB17P-201ENST00000539533 ADAMTSL2Q86TH1 951 aa16.71■□□□□ 0.27
PCDHB17P-201ENST00000539533 VPS35Q96QK1 796 aa16.71■□□□□ 0.27
PCDHB17P-201ENST00000539533 RSPH9Q9H1X1 276 aaPredicted RBP16.71■□□□□ 0.27
PCDHB17P-201ENST00000539533 SEMA4BQ9NPR2 832 aaPredicted RBP16.71■□□□□ 0.27
PCDHB17P-201ENST00000539533 HEBP1Q9NRV9 189 aa16.71■□□□□ 0.27
PCDHB17P-201ENST00000539533 SUCOQ9UBS9 1254 aaKnown RBP16.71■□□□□ 0.27
PCDHB17P-201ENST00000539533 LIMD1Q9UGP4 676 aa16.71■□□□□ 0.27
PCDHB17P-201ENST00000539533 RNF11Q9Y3C5 154 aa16.71■□□□□ 0.27
PCDHB17P-201ENST00000539533 TRAF6Q9Y4K3 522 aa16.71■□□□□ 0.27
PCDHB17P-201ENST00000539533 AP4S1Q9Y587 144 aa16.71■□□□□ 0.27
PCDHB17P-201ENST00000539533 FADS3Q9Y5Q0 445 aa16.71■□□□□ 0.27
PCDHB17P-201ENST00000539533 TRPC5OSA6NMA1 111 aa16.71■□□□□ 0.26
PCDHB17P-201ENST00000539533 CFAP99D6REC4 459 aa16.71■□□□□ 0.26
PCDHB17P-201ENST00000539533 H0YJX3 145 aa16.71■□□□□ 0.26
PCDHB17P-201ENST00000539533 STX16O14662 325 aa16.71■□□□□ 0.26
PCDHB17P-201ENST00000539533 MAGEB3O15480 346 aa16.71■□□□□ 0.26
PCDHB17P-201ENST00000539533 C8BP07358 591 aa16.71■□□□□ 0.26
PCDHB17P-201ENST00000539533 EMP3P54852 163 aa16.71■□□□□ 0.26
PCDHB17P-201ENST00000539533 CLCQ05315 142 aa16.71■□□□□ 0.26
PCDHB17P-201ENST00000539533 PON2Q15165 354 aa16.71■□□□□ 0.26
PCDHB17P-201ENST00000539533 CST6Q15828 149 aa16.71■□□□□ 0.26
PCDHB17P-201ENST00000539533 PHKG1Q16816 387 aa16.71■□□□□ 0.26
PCDHB17P-201ENST00000539533 ANKS6Q68DC2 871 aa16.71■□□□□ 0.26
PCDHB17P-201ENST00000539533 ZNF554Q86TJ5 538 aa16.71■□□□□ 0.26
PCDHB17P-201ENST00000539533 NUS1Q96E22 293 aa16.71■□□□□ 0.26
PCDHB17P-201ENST00000539533 ZNF597Q96LX8 424 aa16.71■□□□□ 0.26
PCDHB17P-201ENST00000539533 SEMA6AQ9H2E6 1030 aa16.71■□□□□ 0.26
PCDHB17P-201ENST00000539533 COQ10BQ9H8M1 238 aa16.71■□□□□ 0.26
PCDHB17P-201ENST00000539533 SERGEFQ9UGK8 458 aa16.71■□□□□ 0.26
PCDHB17P-201ENST00000539533 CNOT6Q9ULM6 557 aaKnown RBP16.71■□□□□ 0.26
PCDHB17P-201ENST00000539533 SYNCRIPO60506 623 aaKnown RBP16.7■□□□□ 0.26
PCDHB17P-201ENST00000539533 GUCA1CO95843 209 aa16.7■□□□□ 0.26
PCDHB17P-201ENST00000539533 EGFP01133 1207 aa16.7■□□□□ 0.26
PCDHB17P-201ENST00000539533 RPS17P08708 135 aaKnown RBP16.7■□□□□ 0.26
PCDHB17P-201ENST00000539533 CTSCP53634 463 aa16.7■□□□□ 0.26
PCDHB17P-201ENST00000539533 BOP1Q14137 746 aaKnown RBP16.7■□□□□ 0.26
PCDHB17P-201ENST00000539533 TRIM25Q14258 630 aaKnown RBP16.7■□□□□ 0.26
PCDHB17P-201ENST00000539533 RAB11FIP1Q6WKZ4 1283 aaPredicted RBP16.7■□□□□ 0.26
PCDHB17P-201ENST00000539533 VRK3Q8IV63 474 aa16.7■□□□□ 0.26
PCDHB17P-201ENST00000539533 RASGEF1AQ8N9B8 481 aa16.7■□□□□ 0.26
PCDHB17P-201ENST00000539533 TSPAN14Q8NG11 270 aa16.7■□□□□ 0.26
PCDHB17P-201ENST00000539533 PHF12Q96QT6 1004 aa16.7■□□□□ 0.26
PCDHB17P-201ENST00000539533 HAUS8Q9BT25 410 aa16.7■□□□□ 0.26
PCDHB17P-201ENST00000539533 FAM126AQ9BYI3 521 aaPredicted RBP16.7■□□□□ 0.26
PCDHB17P-201ENST00000539533 PCDHAC1Q9H158 963 aa16.7■□□□□ 0.26
PCDHB17P-201ENST00000539533 KCNK12Q9HB15 430 aa16.7■□□□□ 0.26
PCDHB17P-201ENST00000539533 MID1IP1Q9NPA3 183 aa16.7■□□□□ 0.26
PCDHB17P-201ENST00000539533 E7ENX8 843 aa16.7■□□□□ 0.26
PCDHB17P-201ENST00000539533 FFAR2O15552 330 aa16.7■□□□□ 0.26
PCDHB17P-201ENST00000539533 TRMUO75648 421 aaKnown RBP16.7■□□□□ 0.26
PCDHB17P-201ENST00000539533 TAS2R38P59533 333 aa16.7■□□□□ 0.26
PCDHB17P-201ENST00000539533 TXNL4AP83876 142 aaKnown RBP16.7■□□□□ 0.26
PCDHB17P-201ENST00000539533 TMEM115Q12893 351 aaPredicted RBP16.7■□□□□ 0.26
PCDHB17P-201ENST00000539533 CCDC85BQ15834 202 aaPredicted RBP16.7■□□□□ 0.26
PCDHB17P-201ENST00000539533 LDLRAP1Q5SW96 308 aa16.7■□□□□ 0.26
PCDHB17P-201ENST00000539533 CXorf40AQ8TE69 158 aa16.7■□□□□ 0.26
PCDHB17P-201ENST00000539533 MRPL40Q9NQ50 206 aaKnown RBP16.7■□□□□ 0.26
PCDHB17P-201ENST00000539533 NUDT4Q9NZJ9 180 aa16.7■□□□□ 0.26
PCDHB17P-201ENST00000539533 FAM8A1Q9UBU6 413 aa16.7■□□□□ 0.26
PCDHB17P-201ENST00000539533 EIF2B4Q9UI10 523 aaKnown RBP16.7■□□□□ 0.26
PCDHB17P-201ENST00000539533 PCTPQ9UKL6 214 aa16.7■□□□□ 0.26
PCDHB17P-201ENST00000539533 CKAP5Q14008 2032 aa16.69■□□□□ 0.26
PCDHB17P-201ENST00000539533 TMEM202A6NGA9 273 aa16.69■□□□□ 0.26
PCDHB17P-201ENST00000539533 FOXA1P55317 472 aa16.69■□□□□ 0.26
PCDHB17P-201ENST00000539533 TMEM196Q5HYL7 178 aa16.69■□□□□ 0.26
PCDHB17P-201ENST00000539533 AGBL4Q5VU57 503 aa16.69■□□□□ 0.26
PCDHB17P-201ENST00000539533 RAET1GQ6H3X3 334 aa16.69■□□□□ 0.26
PCDHB17P-201ENST00000539533 SLC44A3Q8N4M1 653 aa16.69■□□□□ 0.26
PCDHB17P-201ENST00000539533 LRTOMTQ8WZ04 291 aa16.69■□□□□ 0.26
PCDHB17P-201ENST00000539533 RAB7BQ96AH8 199 aa16.69■□□□□ 0.26
PCDHB17P-201ENST00000539533 CCT7Q99832 543 aa16.69■□□□□ 0.26
PCDHB17P-201ENST00000539533 C1QTNF3Q9BXJ4 246 aa16.69■□□□□ 0.26
PCDHB17P-201ENST00000539533 KLHL42Q9P2K6 505 aa16.69■□□□□ 0.26
PCDHB17P-201ENST00000539533 PIAS3Q9Y6X2 628 aa16.69■□□□□ 0.26
PCDHB17P-201ENST00000539533 CBSLP0DN79 551 aa16.69■□□□□ 0.26
Retrieved 100 of 20,778 RNA–protein pairs in 28.3 ms