RNA–Protein interactions for RNA: ENST00000532339.1

CD44-235, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 2

Gene CD44, Length 589 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-235ENST00000532339 KIAA1456Q9P272 454 aa3.84□□□□□ -1.79
CD44-235ENST00000532339 ADD3Q9UEY8 706 aaKnown RBP3.84□□□□□ -1.79
CD44-235ENST00000532339 LIMA1Q9UHB6 759 aaKnown RBP3.84□□□□□ -1.79
CD44-235ENST00000532339 TTLL3Q9Y4R7 772 aa3.84□□□□□ -1.79
CD44-235ENST00000532339 KCNE2Q9Y6J6 123 aa3.84□□□□□ -1.79
CD44-235ENST00000532339 ZFP37Q9Y6Q3 630 aaPredicted RBP3.84□□□□□ -1.79
CD44-235ENST00000532339 CAPN7Q9Y6W3 813 aa3.84□□□□□ -1.79
CD44-235ENST00000532339 CELSR1Q9NYQ6 3014 aa3.84□□□□□ -1.79
CD44-235ENST00000532339 NRCAMQ92823 1304 aa3.84□□□□□ -1.79
CD44-235ENST00000532339 ASCC3Q8N3C0 2202 aaKnown RBP3.84□□□□□ -1.79
CD44-235ENST00000532339 HIVEP1P15822 2718 aa3.84□□□□□ -1.8
CD44-235ENST00000532339 KIAA1671Q9BY89 1806 aa3.84□□□□□ -1.8
CD44-235ENST00000532339 IGLV5-37A0A075B6J1 123 aa3.83□□□□□ -1.8
CD44-235ENST00000532339 A0A0B4J293 547 aa3.83□□□□□ -1.8
CD44-235ENST00000532339 A0A0U1RQJ8 604 aa3.83□□□□□ -1.8
CD44-235ENST00000532339 A0A1W2PQF6 199 aa3.83□□□□□ -1.8
CD44-235ENST00000532339 CBY3A6NI87 242 aa3.83□□□□□ -1.8
CD44-235ENST00000532339 FAM157AC9JC47 383 aa3.83□□□□□ -1.8
CD44-235ENST00000532339 E9PAM4 449 aa3.83□□□□□ -1.8
CD44-235ENST00000532339 ZNF500O60304 480 aaPredicted RBP3.83□□□□□ -1.8
CD44-235ENST00000532339 GJB3O75712 270 aa3.83□□□□□ -1.8
CD44-235ENST00000532339 GAS8-AS1O95177 125 aa3.83□□□□□ -1.8
CD44-235ENST00000532339 PLGP00747 810 aaPredicted RBP3.83□□□□□ -1.8
CD44-235ENST00000532339 SERPINC1P01008 464 aa3.83□□□□□ -1.8
CD44-235ENST00000532339 IL1AP01583 271 aa3.83□□□□□ -1.8
CD44-235ENST00000532339 F7P08709 466 aaPredicted RBP3.83□□□□□ -1.8
CD44-235ENST00000532339 CCDC192P0DO97 292 aa3.83□□□□□ -1.8
CD44-235ENST00000532339 FMO4P31512 558 aa3.83□□□□□ -1.8
CD44-235ENST00000532339 DCTDP32321 178 aa3.83□□□□□ -1.8
CD44-235ENST00000532339 ACTN2P35609 894 aa3.83□□□□□ -1.8
CD44-235ENST00000532339 PEX5P50542 639 aa3.83□□□□□ -1.8
CD44-235ENST00000532339 RIPK4P57078 832 aa3.83□□□□□ -1.8
CD44-235ENST00000532339 OLR1P78380 273 aa3.83□□□□□ -1.8
CD44-235ENST00000532339 MC1RQ01726 317 aa3.83□□□□□ -1.8
CD44-235ENST00000532339 CYP4A11Q02928 519 aa3.83□□□□□ -1.8
CD44-235ENST00000532339 SNTA1Q13424 505 aa3.83□□□□□ -1.8
CD44-235ENST00000532339 GIT2Q14161 759 aa3.83□□□□□ -1.8
CD44-235ENST00000532339 MED22Q15528 200 aa3.83□□□□□ -1.8
CD44-235ENST00000532339 ME3Q16798 604 aa3.83□□□□□ -1.8
CD44-235ENST00000532339 DCAF6Q58WW2 860 aa3.83□□□□□ -1.8
CD44-235ENST00000532339 OTUD3Q5T2D3 398 aaPredicted RBP3.83□□□□□ -1.8
CD44-235ENST00000532339 NCEH1Q6PIU2 408 aa3.83□□□□□ -1.8
CD44-235ENST00000532339 KLHL24Q6TFL4 600 aa3.83□□□□□ -1.8
CD44-235ENST00000532339 MOB3CQ70IA8 216 aa3.83□□□□□ -1.8
CD44-235ENST00000532339 SLC46A3Q7Z3Q1 461 aa3.83□□□□□ -1.8
CD44-235ENST00000532339 SZRD1Q7Z422 152 aa3.83□□□□□ -1.8
CD44-235ENST00000532339 TADA2BQ86TJ2 420 aa3.83□□□□□ -1.8
CD44-235ENST00000532339 FAM160B2Q86V87 743 aa3.83□□□□□ -1.8
CD44-235ENST00000532339 RPAP2Q8IXW5 612 aaPredicted RBP3.83□□□□□ -1.8
CD44-235ENST00000532339 WDTC1Q8N5D0 677 aa3.83□□□□□ -1.8
CD44-235ENST00000532339 LSMEM1Q8N8F7 131 aa3.83□□□□□ -1.8
CD44-235ENST00000532339 COLGALT1Q8NBJ5 622 aa3.83□□□□□ -1.8
CD44-235ENST00000532339 C11orf65Q8NCR3 313 aa3.83□□□□□ -1.8
CD44-235ENST00000532339 DNAAF1Q8NEP3 725 aa3.83□□□□□ -1.8
CD44-235ENST00000532339 INTS12Q96CB8 462 aaKnown RBP3.83□□□□□ -1.8
CD44-235ENST00000532339 FAM120BQ96EK7 910 aaKnown RBP3.83□□□□□ -1.8
CD44-235ENST00000532339 MOCOSQ96EN8 888 aa3.83□□□□□ -1.8
CD44-235ENST00000532339 SLF1Q9BQI6 1058 aa3.83□□□□□ -1.8
CD44-235ENST00000532339 PI4K2AQ9BTU6 479 aa3.83□□□□□ -1.8
CD44-235ENST00000532339 MSTO1Q9BUK6 570 aa3.83□□□□□ -1.8
CD44-235ENST00000532339 RPP25Q9BUL9 199 aaKnown RBP3.83□□□□□ -1.8
CD44-235ENST00000532339 PNNQ9H307 717 aaKnown RBP3.83□□□□□ -1.8
CD44-235ENST00000532339 SYNCQ9H7C4 482 aa3.83□□□□□ -1.8
CD44-235ENST00000532339 LMAN1LQ9HAT1 526 aa3.83□□□□□ -1.8
CD44-235ENST00000532339 ATP8A2Q9NTI2 1148 aa3.83□□□□□ -1.8
CD44-235ENST00000532339 HCFC1R1Q9NWW0 138 aa3.83□□□□□ -1.8
CD44-235ENST00000532339 ERRFI1Q9UJM3 462 aaPredicted RBP3.83□□□□□ -1.8
CD44-235ENST00000532339 MKLN1Q9UL63 735 aa3.83□□□□□ -1.8
CD44-235ENST00000532339 CORO1CQ9ULV4 474 aaPredicted RBP3.83□□□□□ -1.8
CD44-235ENST00000532339 LYVE1Q9Y5Y7 322 aa3.83□□□□□ -1.8
CD44-235ENST00000532339 DDX49Q9Y6V7 483 aaKnown RBP3.83□□□□□ -1.8
CD44-235ENST00000532339 CLUHO75153 1309 aa3.83□□□□□ -1.8
CD44-235ENST00000532339 PARP14Q460N5 1801 aa3.83□□□□□ -1.8
CD44-235ENST00000532339 PLXNB3Q9ULL4 1909 aa3.83□□□□□ -1.8
CD44-235ENST00000532339 ICE1Q9Y2F5 2266 aa3.83□□□□□ -1.8
CD44-235ENST00000532339 ATRQ13535 2644 aa3.83□□□□□ -1.8
CD44-235ENST00000532339 HIVEP3Q5T1R4 2406 aa3.82□□□□□ -1.8
CD44-235ENST00000532339 SPAG17Q6Q759 2223 aa3.82□□□□□ -1.8
CD44-235ENST00000532339 CACNA1FO60840 1977 aa3.82□□□□□ -1.8
CD44-235ENST00000532339 MBD3L2BA0A1B0GVZ6 204 aaPredicted RBP3.82□□□□□ -1.8
CD44-235ENST00000532339 hCG_1807616A0A1W2PRN6 198 aa3.82□□□□□ -1.8
CD44-235ENST00000532339 HAS3O00219 553 aa3.82□□□□□ -1.8
CD44-235ENST00000532339 MPHOSPH10O00566 681 aaKnown RBP3.82□□□□□ -1.8
CD44-235ENST00000532339 VILLO15195 856 aa3.82□□□□□ -1.8
CD44-235ENST00000532339 PAGE4O60829 102 aa3.82□□□□□ -1.8
CD44-235ENST00000532339 RHOBTB1O94844 696 aa3.82□□□□□ -1.8
CD44-235ENST00000532339 PGM3O95394 542 aa3.82□□□□□ -1.8
CD44-235ENST00000532339 CSH1P0DML2 217 aa3.82□□□□□ -1.8
CD44-235ENST00000532339 CSH2P0DML3 217 aa3.82□□□□□ -1.8
CD44-235ENST00000532339 EDN2P20800 178 aa3.82□□□□□ -1.8
CD44-235ENST00000532339 NFKBIAP25963 317 aa3.82□□□□□ -1.8
CD44-235ENST00000532339 SHMT1P34896 483 aa3.82□□□□□ -1.8
CD44-235ENST00000532339 PSMB10P40306 273 aa3.82□□□□□ -1.8
CD44-235ENST00000532339 GARSP41250 739 aaKnown RBP3.82□□□□□ -1.8
CD44-235ENST00000532339 ST3GAL1Q11201 340 aa3.82□□□□□ -1.8
CD44-235ENST00000532339 SF3B4Q15427 424 aaKnown RBP eCLIP3.82□□□□□ -1.8
CD44-235ENST00000532339 SERTAD4-AS1Q5TG53 156 aa3.82□□□□□ -1.8
CD44-235ENST00000532339 TTI2Q6NXR4 508 aa3.82□□□□□ -1.8
CD44-235ENST00000532339 CYP20A1Q6UW02 462 aa3.82□□□□□ -1.8
CD44-235ENST00000532339 IL20RBQ6UXL0 311 aa3.82□□□□□ -1.8
Retrieved 100 of 20,778 RNA–protein pairs in 23.9 ms