RNA–Protein interactions for RNA: ENST00000528455.5

CD44-228, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 3

Gene CD44, Length 687 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-228ENST00000528455 CACNA1AO00555 2505 aa7.26□□□□□ -1.25
CD44-228ENST00000528455 A0A087X1B8 175 aa7.25□□□□□ -1.25
CD44-228ENST00000528455 A0A096LPK6 155 aa7.25□□□□□ -1.25
CD44-228ENST00000528455 A0A1W2PR77 199 aa7.25□□□□□ -1.25
CD44-228ENST00000528455 SMIM23A6NLE4 172 aa7.25□□□□□ -1.25
CD44-228ENST00000528455 E5RI56 91 aa7.25□□□□□ -1.25
CD44-228ENST00000528455 TLR4O00206 839 aa7.25□□□□□ -1.25
CD44-228ENST00000528455 LIN7AO14910 233 aaPredicted RBP7.25□□□□□ -1.25
CD44-228ENST00000528455 VILLO15195 856 aa7.25□□□□□ -1.25
CD44-228ENST00000528455 GPR39O43194 453 aa7.25□□□□□ -1.25
CD44-228ENST00000528455 GPC4O75487 556 aa7.25□□□□□ -1.25
CD44-228ENST00000528455 SLCO2B1O94956 709 aa7.25□□□□□ -1.25
CD44-228ENST00000528455 TRIM16O95361 564 aa7.25□□□□□ -1.25
CD44-228ENST00000528455 WISP3O95389 354 aaPredicted RBP7.25□□□□□ -1.25
CD44-228ENST00000528455 TNFP01375 233 aa7.25□□□□□ -1.25
CD44-228ENST00000528455 H2AFB1P0C5Y9 115 aa7.25□□□□□ -1.25
CD44-228ENST00000528455 H2AFB2P0C5Z0 115 aa7.25□□□□□ -1.25
CD44-228ENST00000528455 THEGLP0DJG4 465 aa7.25□□□□□ -1.25
CD44-228ENST00000528455 GNSP15586 552 aa7.25□□□□□ -1.25
CD44-228ENST00000528455 VCLP18206 1134 aa7.25□□□□□ -1.25
CD44-228ENST00000528455 BCKDHBP21953 392 aa7.25□□□□□ -1.25
CD44-228ENST00000528455 FDXRP22570 491 aa7.25□□□□□ -1.25
CD44-228ENST00000528455 NTF4P34130 210 aa7.25□□□□□ -1.25
CD44-228ENST00000528455 CRHR1P34998 444 aa7.25□□□□□ -1.25
CD44-228ENST00000528455 HOXD12P35452 270 aa7.25□□□□□ -1.25
CD44-228ENST00000528455 MPLP40238 635 aa7.25□□□□□ -1.25
CD44-228ENST00000528455 MAPK9P45984 424 aa7.25□□□□□ -1.25
CD44-228ENST00000528455 PRLHRP49683 370 aa7.25□□□□□ -1.25
CD44-228ENST00000528455 CLCN7P51798 805 aa7.25□□□□□ -1.25
CD44-228ENST00000528455 CLCNKAP51800 687 aa7.25□□□□□ -1.25
CD44-228ENST00000528455 AFF3P51826 1226 aaKnown RBP7.25□□□□□ -1.25
CD44-228ENST00000528455 CDKN2DP55273 166 aa7.25□□□□□ -1.25
CD44-228ENST00000528455 IL2P60568 153 aa7.25□□□□□ -1.25
CD44-228ENST00000528455 RPA4Q13156 261 aa7.25□□□□□ -1.25
CD44-228ENST00000528455 PDE1CQ14123 709 aaPredicted RBP7.25□□□□□ -1.25
CD44-228ENST00000528455 TMED2Q15363 201 aa7.25□□□□□ -1.25
CD44-228ENST00000528455 SMAD1Q15797 465 aaKnown RBP7.25□□□□□ -1.25
CD44-228ENST00000528455 FAM83EQ2M2I3 478 aa7.25□□□□□ -1.25
CD44-228ENST00000528455 TTLL9Q3SXZ7 439 aa7.25□□□□□ -1.25
CD44-228ENST00000528455 AASDHQ4L235 1098 aaPredicted RBP7.25□□□□□ -1.25
CD44-228ENST00000528455 PYCR3Q53H96 274 aa7.25□□□□□ -1.25
CD44-228ENST00000528455 RBM20Q5T481 1227 aaKnown RBP7.25□□□□□ -1.25
CD44-228ENST00000528455 ZNF648Q5T619 568 aaPredicted RBP7.25□□□□□ -1.25
CD44-228ENST00000528455 METRNLQ641Q3 311 aa7.25□□□□□ -1.25
CD44-228ENST00000528455 PMS2CLQ68D20 193 aa7.25□□□□□ -1.25
CD44-228ENST00000528455 LRRC8EQ6NSJ5 796 aa7.25□□□□□ -1.25
CD44-228ENST00000528455 ENPP7Q6UWV6 458 aa7.25□□□□□ -1.25
CD44-228ENST00000528455 CYHR1Q6ZMK1 362 aa7.25□□□□□ -1.25
CD44-228ENST00000528455 BEND4Q6ZU67 534 aa7.25□□□□□ -1.25
CD44-228ENST00000528455 MICALCLQ6ZW33 695 aa7.25□□□□□ -1.25
CD44-228ENST00000528455 NEK10Q6ZWH5 1172 aa7.25□□□□□ -1.25
CD44-228ENST00000528455 RAPH1Q70E73 1250 aa7.25□□□□□ -1.25
CD44-228ENST00000528455 OTOAQ7RTW8 1153 aa7.25□□□□□ -1.25
CD44-228ENST00000528455 C11orf96Q7Z7L8 435 aa7.25□□□□□ -1.25
CD44-228ENST00000528455 LRRTM4Q86VH4 590 aa7.25□□□□□ -1.25
CD44-228ENST00000528455 AMZ2Q86W34 360 aa7.25□□□□□ -1.25
CD44-228ENST00000528455 ZNF547Q8IVP9 402 aa7.25□□□□□ -1.25
CD44-228ENST00000528455 CEP97Q8IW35 865 aa7.25□□□□□ -1.25
CD44-228ENST00000528455 GPATCH11Q8N954 259 aa7.25□□□□□ -1.25
CD44-228ENST00000528455 BANPQ8N9N5 519 aa7.25□□□□□ -1.25
CD44-228ENST00000528455 ACVR1CQ8NER5 493 aa7.25□□□□□ -1.25
CD44-228ENST00000528455 OR2L2Q8NH16 312 aa7.25□□□□□ -1.25
CD44-228ENST00000528455 HSPA12BQ96MM6 686 aa7.25□□□□□ -1.25
CD44-228ENST00000528455 WDR92Q96MX6 357 aa7.25□□□□□ -1.25
CD44-228ENST00000528455 SMC6Q96SB8 1091 aa7.25□□□□□ -1.25
CD44-228ENST00000528455 NDNQ99608 321 aa7.25□□□□□ -1.25
CD44-228ENST00000528455 OLFM1Q99784 485 aa7.25□□□□□ -1.25
CD44-228ENST00000528455 ERVMER34-1Q9H9K5 563 aa7.25□□□□□ -1.25
CD44-228ENST00000528455 TM9SF3Q9HD45 589 aa7.25□□□□□ -1.25
CD44-228ENST00000528455 FZD3Q9NPG1 666 aa7.25□□□□□ -1.25
CD44-228ENST00000528455 AASDHPPTQ9NRN7 309 aa7.25□□□□□ -1.25
CD44-228ENST00000528455 SNX15Q9NRS6 342 aa7.25□□□□□ -1.25
CD44-228ENST00000528455 TRNAU1APQ9NX07 287 aaKnown RBP7.25□□□□□ -1.25
CD44-228ENST00000528455 FAM53CQ9NYF3 392 aa7.25□□□□□ -1.25
CD44-228ENST00000528455 SUSD2Q9UGT4 822 aa7.25□□□□□ -1.25
CD44-228ENST00000528455 ZNHIT2Q9UHR6 403 aa7.25□□□□□ -1.25
CD44-228ENST00000528455 PILRBQ9UKJ0 227 aa7.25□□□□□ -1.25
CD44-228ENST00000528455 ACSL5Q9ULC5 683 aa7.25□□□□□ -1.25
CD44-228ENST00000528455 RUVBL2Q9Y230 463 aaKnown RBP7.25□□□□□ -1.25
CD44-228ENST00000528455 RAXQ9Y2V3 346 aa7.25□□□□□ -1.25
CD44-228ENST00000528455 DGKBQ9Y6T7 804 aa7.25□□□□□ -1.25
CD44-228ENST00000528455 GON4LQ3T8J9 2241 aa7.25□□□□□ -1.25
CD44-228ENST00000528455 PI4KAP42356 2102 aa7.24□□□□□ -1.25
CD44-228ENST00000528455 A0A1B0GTW7 788 aa7.24□□□□□ -1.25
CD44-228ENST00000528455 SLC5A10A0PJK1 596 aa7.24□□□□□ -1.25
CD44-228ENST00000528455 PRSS38A1L453 326 aa7.24□□□□□ -1.25
CD44-228ENST00000528455 OR2AG2A6NM03 316 aa7.24□□□□□ -1.25
CD44-228ENST00000528455 IQCF5A8MTL0 148 aa7.24□□□□□ -1.25
CD44-228ENST00000528455 MEI4A8MW99 385 aa7.24□□□□□ -1.25
CD44-228ENST00000528455 H0Y8X5 98 aa7.24□□□□□ -1.25
CD44-228ENST00000528455 TPP1O14773 563 aa7.24□□□□□ -1.25
CD44-228ENST00000528455 SLC30A4O14863 429 aa7.24□□□□□ -1.25
CD44-228ENST00000528455 BCAT2O15382 392 aaPredicted RBP7.24□□□□□ -1.25
CD44-228ENST00000528455 PRPF4O43172 522 aaKnown RBP eCLIP7.24□□□□□ -1.25
CD44-228ENST00000528455 TYROBPO43914 113 aa7.24□□□□□ -1.25
CD44-228ENST00000528455 DFNA5O60443 496 aa7.24□□□□□ -1.25
CD44-228ENST00000528455 NIPSNAP2O75323 286 aa7.24□□□□□ -1.25
CD44-228ENST00000528455 MTX2O75431 263 aa7.24□□□□□ -1.25
CD44-228ENST00000528455 KLHL2O95198 593 aa7.24□□□□□ -1.25
CD44-228ENST00000528455 APOA4P06727 396 aa7.24□□□□□ -1.25
Retrieved 100 of 20,778 RNA–protein pairs in 34.7 ms