RNA–Protein interactions for RNA: ENST00000526204.5

VPS28-205, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 5

Gene VPS28, Length 2,120 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-205ENST00000526204 CDH7Q9ULB5 785 aa20.77■□□□□ 0.92
VPS28-205ENST00000526204 INVSQ9Y283 1065 aa20.77■□□□□ 0.92
VPS28-205ENST00000526204 ANKRD12Q6UB98 2062 aa20.77■□□□□ 0.92
VPS28-205ENST00000526204 H0Y858 1186 aa20.77■□□□□ 0.91
VPS28-205ENST00000526204 ERN1O75460 977 aaKnown RBP20.77■□□□□ 0.91
VPS28-205ENST00000526204 ZNF821O75541 412 aaPredicted RBP20.77■□□□□ 0.91
VPS28-205ENST00000526204 PCNAP12004 261 aa20.77■□□□□ 0.91
VPS28-205ENST00000526204 DCKP27707 260 aa20.77■□□□□ 0.91
VPS28-205ENST00000526204 RPIAP49247 311 aa20.77■□□□□ 0.91
VPS28-205ENST00000526204 LMAN2Q12907 356 aa20.77■□□□□ 0.91
VPS28-205ENST00000526204 CBX2Q14781 532 aaPredicted RBP20.77■□□□□ 0.91
VPS28-205ENST00000526204 TTC23Q5W5X9 447 aa20.77■□□□□ 0.91
VPS28-205ENST00000526204 CRTC1Q6UUV9 634 aa20.77■□□□□ 0.91
VPS28-205ENST00000526204 KCTD8Q6ZWB6 473 aa20.77■□□□□ 0.91
VPS28-205ENST00000526204 ADGRG2Q8IZP9 1017 aa20.77■□□□□ 0.91
VPS28-205ENST00000526204 TCAIMQ8N3R3 496 aa20.77■□□□□ 0.91
VPS28-205ENST00000526204 GPR26Q8NDV2 337 aa20.77■□□□□ 0.91
VPS28-205ENST00000526204 B4GALNT2Q8NHY0 566 aa20.77■□□□□ 0.91
VPS28-205ENST00000526204 SCRN2Q96FV2 425 aa20.77■□□□□ 0.91
VPS28-205ENST00000526204 COPS8Q99627 209 aa20.77■□□□□ 0.91
VPS28-205ENST00000526204 TLR9Q9NR96 1032 aa20.77■□□□□ 0.91
VPS28-205ENST00000526204 SLC25A37Q9NYZ2 338 aa20.77■□□□□ 0.91
VPS28-205ENST00000526204 IFT80Q9P2H3 777 aaPredicted RBP20.77■□□□□ 0.91
VPS28-205ENST00000526204 NPIPB15A6NHN6 443 aaPredicted RBP20.76■□□□□ 0.91
VPS28-205ENST00000526204 CXCR6O00574 342 aa20.76■□□□□ 0.91
VPS28-205ENST00000526204 URODP06132 367 aa20.76■□□□□ 0.91
VPS28-205ENST00000526204 RETP07949 1114 aa20.76■□□□□ 0.91
VPS28-205ENST00000526204 BCKDHAP12694 445 aa20.76■□□□□ 0.91
VPS28-205ENST00000526204 SNRPD1P62314 119 aaKnown RBP20.76■□□□□ 0.91
VPS28-205ENST00000526204 MYBPC3Q14896 1274 aa20.76■□□□□ 0.91
VPS28-205ENST00000526204 RAB39AQ14964 217 aa20.76■□□□□ 0.91
VPS28-205ENST00000526204 PLEKHG6Q3KR16 790 aa20.76■□□□□ 0.91
VPS28-205ENST00000526204 DGKKQ5KSL6 1271 aa20.76■□□□□ 0.91
VPS28-205ENST00000526204 USP45Q70EL2 814 aa20.76■□□□□ 0.91
VPS28-205ENST00000526204 DEFB128Q7Z7B8 93 aa20.76■□□□□ 0.91
VPS28-205ENST00000526204 TSPAN33Q86UF1 283 aa20.76■□□□□ 0.91
VPS28-205ENST00000526204 MSRB3Q8IXL7 192 aa20.76■□□□□ 0.91
VPS28-205ENST00000526204 SLC39A11Q8N1S5 342 aa20.76■□□□□ 0.91
VPS28-205ENST00000526204 FAM162AQ96A26 154 aa20.76■□□□□ 0.91
VPS28-205ENST00000526204 SLC47A1Q96FL8 570 aa20.76■□□□□ 0.91
VPS28-205ENST00000526204 ING2Q9H160 280 aa20.76■□□□□ 0.91
VPS28-205ENST00000526204 ARL15Q9NXU5 204 aa20.76■□□□□ 0.91
VPS28-205ENST00000526204 PPIL1Q9Y3C6 166 aa20.76■□□□□ 0.91
VPS28-205ENST00000526204 A8MX80 341 aa20.75■□□□□ 0.91
VPS28-205ENST00000526204 CST1P01037 141 aa20.75■□□□□ 0.91
VPS28-205ENST00000526204 PRPS2P11908 318 aa20.75■□□□□ 0.91
VPS28-205ENST00000526204 ZDHHC20Q5W0Z9 365 aa20.75■□□□□ 0.91
VPS28-205ENST00000526204 ZNF773Q6PK81 442 aa20.75■□□□□ 0.91
VPS28-205ENST00000526204 SUSD1Q6UWL2 747 aa20.75■□□□□ 0.91
VPS28-205ENST00000526204 ENPP6Q6UWR7 440 aa20.75■□□□□ 0.91
VPS28-205ENST00000526204 MICU2Q8IYU8 434 aa20.75■□□□□ 0.91
VPS28-205ENST00000526204 KRTCAP2Q8N6L1 136 aa20.75■□□□□ 0.91
VPS28-205ENST00000526204 FBXO30Q8TB52 745 aa20.75■□□□□ 0.91
VPS28-205ENST00000526204 MAGIXQ9H6Y5 334 aa20.75■□□□□ 0.91
VPS28-205ENST00000526204 PARVBQ9HBI1 364 aa20.75■□□□□ 0.91
VPS28-205ENST00000526204 CDC14AQ9UNH5 594 aa20.75■□□□□ 0.91
VPS28-205ENST00000526204 SNX6Q9UNH7 406 aa20.75■□□□□ 0.91
VPS28-205ENST00000526204 SH3BP1Q9Y3L3 701 aa20.75■□□□□ 0.91
VPS28-205ENST00000526204 ANAPC1Q9H1A4 1944 aa20.75■□□□□ 0.91
VPS28-205ENST00000526204 TRBV5-3A0A0A0MS03 114 aa20.75■□□□□ 0.91
VPS28-205ENST00000526204 CLDN8P56748 225 aa20.75■□□□□ 0.91
VPS28-205ENST00000526204 ZIK1Q3SY52 487 aaPredicted RBP20.75■□□□□ 0.91
VPS28-205ENST00000526204 GGTA1PQ4G0N0 100 aa20.75■□□□□ 0.91
VPS28-205ENST00000526204 LRRC70Q7Z2Q7 622 aa20.75■□□□□ 0.91
VPS28-205ENST00000526204 THAP5Q7Z6K1 395 aa20.75■□□□□ 0.91
VPS28-205ENST00000526204 GPR149Q86SP6 731 aa20.75■□□□□ 0.91
VPS28-205ENST00000526204 ZSWIM9Q86XI8 627 aa20.75■□□□□ 0.91
VPS28-205ENST00000526204 FAM81AQ8TBF8 368 aa20.75■□□□□ 0.91
VPS28-205ENST00000526204 MRPS31Q92665 395 aaKnown RBP20.75■□□□□ 0.91
VPS28-205ENST00000526204 ACPTQ9BZG2 426 aa20.75■□□□□ 0.91
VPS28-205ENST00000526204 KCNH6Q9H252 994 aa20.75■□□□□ 0.91
VPS28-205ENST00000526204 IKZF5Q9H5V7 419 aa20.75■□□□□ 0.91
VPS28-205ENST00000526204 KAT8Q9H7Z6 458 aaKnown RBP20.75■□□□□ 0.91
VPS28-205ENST00000526204 RMND5AQ9H871 391 aa20.75■□□□□ 0.91
VPS28-205ENST00000526204 ZNHIT2Q9UHR6 403 aa20.75■□□□□ 0.91
VPS28-205ENST00000526204 C8GP07360 202 aa20.74■□□□□ 0.91
VPS28-205ENST00000526204 OR56A5P0C7T3 313 aa20.74■□□□□ 0.91
VPS28-205ENST00000526204 BMP1P13497 986 aa20.74■□□□□ 0.91
VPS28-205ENST00000526204 TCF3P15923 654 aa20.74■□□□□ 0.91
VPS28-205ENST00000526204 NRIP1P48552 1158 aa20.74■□□□□ 0.91
VPS28-205ENST00000526204 RPS14P62263 151 aaKnown RBP20.74■□□□□ 0.91
VPS28-205ENST00000526204 CPSF6Q16630 551 aaKnown RBP eCLIP20.74■□□□□ 0.91
VPS28-205ENST00000526204 PLA2G4EQ3MJ16 856 aa20.74■□□□□ 0.91
VPS28-205ENST00000526204 RBM48Q5RL73 367 aaKnown RBP20.74■□□□□ 0.91
VPS28-205ENST00000526204 MBOAT1Q6ZNC8 495 aa20.74■□□□□ 0.91
VPS28-205ENST00000526204 CROCCP3Q8IVE0 287 aa20.74■□□□□ 0.91
VPS28-205ENST00000526204 FAM86B1Q8N7N1 296 aa20.74■□□□□ 0.91
VPS28-205ENST00000526204 SLC12A9Q9BXP2 914 aa20.74■□□□□ 0.91
VPS28-205ENST00000526204 HPS4Q9NQG7 708 aa20.74■□□□□ 0.91
VPS28-205ENST00000526204 DCAF13Q9NV06 445 aaKnown RBP20.74■□□□□ 0.91
VPS28-205ENST00000526204 USE1Q9NZ43 259 aa20.74■□□□□ 0.91
VPS28-205ENST00000526204 TMEM9Q9P0T7 183 aa20.74■□□□□ 0.91
VPS28-205ENST00000526204 CFAP97Q9P2B7 532 aa20.74■□□□□ 0.91
VPS28-205ENST00000526204 PDE10AQ9Y233 779 aa20.74■□□□□ 0.91
VPS28-205ENST00000526204 MAN2B2Q9Y2E5 1009 aa20.74■□□□□ 0.91
VPS28-205ENST00000526204 A0A096LPI6 279 aa20.74■□□□□ 0.91
VPS28-205ENST00000526204 FAM220BPB1ANY3 271 aa20.74■□□□□ 0.91
VPS28-205ENST00000526204 GNGT2O14610 69 aa20.74■□□□□ 0.91
VPS28-205ENST00000526204 CPNE6O95741 557 aa20.74■□□□□ 0.91
VPS28-205ENST00000526204 CKMP06732 381 aa20.74■□□□□ 0.91
Retrieved 100 of 20,778 RNA–protein pairs in 30.9 ms