RNA–Protein interactions for RNA: ENST00000520228.1

SDCBP-208, Transcript of syndecan binding protein, humanhuman

TSL 2

Gene SDCBP, Length 564 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDCBP-208ENST00000520228 PLXNA3P51805 1871 aa7.04□□□□□ -1.28
SDCBP-208ENST00000520228 TRIP11Q15643 1979 aa7.04□□□□□ -1.28
SDCBP-208ENST00000520228 FAM92AA1XBS5 289 aa7.03□□□□□ -1.28
SDCBP-208ENST00000520228 HHLA1C9JL84 531 aa7.03□□□□□ -1.28
SDCBP-208ENST00000520228 O00370 1275 aa7.03□□□□□ -1.28
SDCBP-208ENST00000520228 CHADO15335 359 aa7.03□□□□□ -1.28
SDCBP-208ENST00000520228 POLBP06746 335 aa7.03□□□□□ -1.28
SDCBP-208ENST00000520228 CYP4B1P13584 511 aa7.03□□□□□ -1.28
SDCBP-208ENST00000520228 TYK2P29597 1187 aa7.03□□□□□ -1.28
SDCBP-208ENST00000520228 USP8P40818 1118 aa7.03□□□□□ -1.28
SDCBP-208ENST00000520228 CPA2P48052 419 aa7.03□□□□□ -1.28
SDCBP-208ENST00000520228 CLCN5P51795 746 aa7.03□□□□□ -1.28
SDCBP-208ENST00000520228 MRPS21P82921 87 aaKnown RBP7.03□□□□□ -1.28
SDCBP-208ENST00000520228 ZNF91Q05481 1191 aa7.03□□□□□ -1.28
SDCBP-208ENST00000520228 FCHO2Q0JRZ9 810 aa7.03□□□□□ -1.28
SDCBP-208ENST00000520228 KRT31Q15323 416 aa7.03□□□□□ -1.28
SDCBP-208ENST00000520228 TRIP6Q15654 476 aaKnown RBP7.03□□□□□ -1.28
SDCBP-208ENST00000520228 MLF2Q15773 248 aaPredicted RBP7.03□□□□□ -1.28
SDCBP-208ENST00000520228 PLK5Q496M5 336 aa7.03□□□□□ -1.28
SDCBP-208ENST00000520228 MIDNQ504T8 468 aa7.03□□□□□ -1.28
SDCBP-208ENST00000520228 HECTD3Q5T447 861 aa7.03□□□□□ -1.28
SDCBP-208ENST00000520228 C10orf25Q5T742 122 aa7.03□□□□□ -1.28
SDCBP-208ENST00000520228 SNX30Q5VWJ9 437 aa7.03□□□□□ -1.28
SDCBP-208ENST00000520228 GJB7Q6PEY0 223 aa7.03□□□□□ -1.28
SDCBP-208ENST00000520228 LCLAT1Q6UWP7 414 aa7.03□□□□□ -1.28
SDCBP-208ENST00000520228 LRIG3Q6UXM1 1119 aa7.03□□□□□ -1.28
SDCBP-208ENST00000520228 RNF144BQ7Z419 303 aa7.03□□□□□ -1.28
SDCBP-208ENST00000520228 PIGZQ86VD9 579 aa7.03□□□□□ -1.28
SDCBP-208ENST00000520228 KLBQ86Z14 1044 aa7.03□□□□□ -1.28
SDCBP-208ENST00000520228 ANKRD20A12PQ8NF67 263 aa7.03□□□□□ -1.28
SDCBP-208ENST00000520228 UBA3Q8TBC4 463 aa7.03□□□□□ -1.28
SDCBP-208ENST00000520228 DNASE1L2Q92874 299 aa7.03□□□□□ -1.28
SDCBP-208ENST00000520228 NACA2Q9H009 215 aa7.03□□□□□ -1.28
SDCBP-208ENST00000520228 TBC1D17Q9HA65 648 aa7.03□□□□□ -1.28
SDCBP-208ENST00000520228 NRIP3Q9NQ35 241 aa7.03□□□□□ -1.28
SDCBP-208ENST00000520228 TRPV5Q9NQA5 729 aa7.03□□□□□ -1.28
SDCBP-208ENST00000520228 HEBP1Q9NRV9 189 aa7.03□□□□□ -1.28
SDCBP-208ENST00000520228 GKN1Q9NS71 199 aa7.03□□□□□ -1.28
SDCBP-208ENST00000520228 TMEM45AQ9NWC5 275 aa7.03□□□□□ -1.28
SDCBP-208ENST00000520228 TAB2Q9NYJ8 693 aa7.03□□□□□ -1.28
SDCBP-208ENST00000520228 TSPAN16Q9UKR8 245 aa7.03□□□□□ -1.28
SDCBP-208ENST00000520228 ARHGAP26Q9UNA1 814 aa7.03□□□□□ -1.28
SDCBP-208ENST00000520228 SCML2Q9UQR0 700 aa7.03□□□□□ -1.28
SDCBP-208ENST00000520228 TRIOO75962 3097 aa7.03□□□□□ -1.28
SDCBP-208ENST00000520228 PDCD11Q14690 1871 aaKnown RBP7.02□□□□□ -1.28
SDCBP-208ENST00000520228 KIR2DS5A0A0G2JLQ3 304 aa7.02□□□□□ -1.29
SDCBP-208ENST00000520228 CXorf65A6NEN9 183 aa7.02□□□□□ -1.29
SDCBP-208ENST00000520228 KIR2DS3K7RE56 304 aa7.02□□□□□ -1.29
SDCBP-208ENST00000520228 ADAM10O14672 748 aa7.02□□□□□ -1.29
SDCBP-208ENST00000520228 XPO1O14980 1071 aaKnown RBP7.02□□□□□ -1.29
SDCBP-208ENST00000520228 COCHO43405 550 aa7.02□□□□□ -1.29
SDCBP-208ENST00000520228 MED7O43513 233 aa7.02□□□□□ -1.29
SDCBP-208ENST00000520228 TLX3O43711 291 aaPredicted RBP7.02□□□□□ -1.29
SDCBP-208ENST00000520228 TSPAN3O60637 253 aa7.02□□□□□ -1.29
SDCBP-208ENST00000520228 UGDHO60701 494 aa7.02□□□□□ -1.29
SDCBP-208ENST00000520228 NEURL1O76050 574 aa7.02□□□□□ -1.29
SDCBP-208ENST00000520228 OAS1P00973 400 aaKnown RBP7.02□□□□□ -1.29
SDCBP-208ENST00000520228 CALCAP01258 141 aa7.02□□□□□ -1.29
SDCBP-208ENST00000520228 PYGLP06737 847 aa7.02□□□□□ -1.29
SDCBP-208ENST00000520228 ZDHHC11BP0C7U3 371 aa7.02□□□□□ -1.29
SDCBP-208ENST00000520228 GLULP15104 373 aa7.02□□□□□ -1.29
SDCBP-208ENST00000520228 CNTFP26441 200 aa7.02□□□□□ -1.29
SDCBP-208ENST00000520228 STAT1P42224 750 aa7.02□□□□□ -1.29
SDCBP-208ENST00000520228 PGFP49763 221 aa7.02□□□□□ -1.29
SDCBP-208ENST00000520228 TUBP50607 506 aa7.02□□□□□ -1.29
SDCBP-208ENST00000520228 TKTL1P51854 596 aa7.02□□□□□ -1.29
SDCBP-208ENST00000520228 ZNF132P52740 706 aa7.02□□□□□ -1.29
SDCBP-208ENST00000520228 STARD6P59095 220 aa7.02□□□□□ -1.29
SDCBP-208ENST00000520228 SLC7A9P82251 487 aa7.02□□□□□ -1.29
SDCBP-208ENST00000520228 BST2Q10589 180 aaKnown RBP7.02□□□□□ -1.29
SDCBP-208ENST00000520228 PDGFRLQ15198 375 aa7.02□□□□□ -1.29
SDCBP-208ENST00000520228 RUNDC3AQ59EK9 446 aa7.02□□□□□ -1.29
SDCBP-208ENST00000520228 LVRNQ6Q4G3 990 aa7.02□□□□□ -1.29
SDCBP-208ENST00000520228 ZNF852Q6ZMS4 543 aa7.02□□□□□ -1.29
SDCBP-208ENST00000520228 TPRG1Q6ZUI0 275 aa7.02□□□□□ -1.29
SDCBP-208ENST00000520228 ARHGAP18Q8N392 663 aa7.02□□□□□ -1.29
SDCBP-208ENST00000520228 RNFT2Q96EX2 444 aa7.02□□□□□ -1.29
SDCBP-208ENST00000520228 ZFYVE19Q96K21 471 aa7.02□□□□□ -1.29
SDCBP-208ENST00000520228 LRRC4Q9HBW1 653 aa7.02□□□□□ -1.29
SDCBP-208ENST00000520228 SIX2Q9NPC8 291 aa7.02□□□□□ -1.29
SDCBP-208ENST00000520228 DNAJC12Q9UKB3 198 aa7.02□□□□□ -1.29
SDCBP-208ENST00000520228 LAMP3Q9UQV4 416 aa7.02□□□□□ -1.29
SDCBP-208ENST00000520228 CPQQ9Y646 472 aa7.02□□□□□ -1.29
SDCBP-208ENST00000520228 PIAS3Q9Y6X2 628 aa7.02□□□□□ -1.29
SDCBP-208ENST00000520228 ANK1P16157 1881 aa7.02□□□□□ -1.29
SDCBP-208ENST00000520228 A0A0G2JK05 382 aa7.01□□□□□ -1.29
SDCBP-208ENST00000520228 TCRBV7S3A2A0A539 114 aa7.01□□□□□ -1.29
SDCBP-208ENST00000520228 KANSL1LA0AUZ9 987 aa7.01□□□□□ -1.29
SDCBP-208ENST00000520228 SYCE3A1L190 88 aa7.01□□□□□ -1.29
SDCBP-208ENST00000520228 SMTNL1A8MU46 457 aa7.01□□□□□ -1.29
SDCBP-208ENST00000520228 BECN2A8MW95 431 aa7.01□□□□□ -1.29
SDCBP-208ENST00000520228 M0QYV0 167 aa7.01□□□□□ -1.29
SDCBP-208ENST00000520228 TULP2O00295 520 aa7.01□□□□□ -1.29
SDCBP-208ENST00000520228 KLK10O43240 276 aa7.01□□□□□ -1.29
SDCBP-208ENST00000520228 PI15O43692 258 aa7.01□□□□□ -1.29
SDCBP-208ENST00000520228 NFATC1O95644 943 aa7.01□□□□□ -1.29
SDCBP-208ENST00000520228 OLFM2O95897 454 aa7.01□□□□□ -1.29
SDCBP-208ENST00000520228 TBX18O95935 607 aa7.01□□□□□ -1.29
SDCBP-208ENST00000520228 HLA-DQA2P01906 255 aa7.01□□□□□ -1.29
SDCBP-208ENST00000520228 MBL2P11226 248 aaPredicted RBP7.01□□□□□ -1.29
Retrieved 100 of 20,778 RNA–protein pairs in 33.5 ms