RNA–Protein interactions for RNA: ENST00000504761.6

TCOF1-207, Transcript of treacle ribosome biogenesis factor 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene TCOF1, Length 4,467 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TCOF1-207ENST00000504761 KRT73Q86Y46 540 aa13.8□□□□□ -0.2
TCOF1-207ENST00000504761 ZNF655Q8N720 491 aaPredicted RBP13.8□□□□□ -0.2
TCOF1-207ENST00000504761 TMEM145Q8NBT3 493 aa13.8□□□□□ -0.2
TCOF1-207ENST00000504761 GLYATL1Q969I3 302 aa13.8□□□□□ -0.2
TCOF1-207ENST00000504761 TUBGCP5Q96RT8 1024 aa13.8□□□□□ -0.2
TCOF1-207ENST00000504761 P2RY13Q9BPV8 354 aa13.8□□□□□ -0.2
TCOF1-207ENST00000504761 KRT84Q9NSB2 600 aa13.8□□□□□ -0.2
TCOF1-207ENST00000504761 DNMT3BQ9UBC3 853 aaKnown RBP13.8□□□□□ -0.2
TCOF1-207ENST00000504761 TAC3Q9UHF0 121 aa13.8□□□□□ -0.2
TCOF1-207ENST00000504761 SAMHD1Q9Y3Z3 626 aaKnown RBP13.8□□□□□ -0.2
TCOF1-207ENST00000504761 COLEC10Q9Y6Z7 277 aa13.8□□□□□ -0.2
TCOF1-207ENST00000504761 TRIM25Q14258 630 aaKnown RBP13.79□□□□□ -0.2
TCOF1-207ENST00000504761 FRG2Q64ET8 278 aa13.79□□□□□ -0.2
TCOF1-207ENST00000504761 GPR141Q7Z602 305 aa13.79□□□□□ -0.2
TCOF1-207ENST00000504761 PLD3Q8IV08 490 aa13.79□□□□□ -0.2
TCOF1-207ENST00000504761 FRG2BQ96QU4 278 aa13.79□□□□□ -0.2
TCOF1-207ENST00000504761 LATS1O95835 1130 aa13.79□□□□□ -0.2
TCOF1-207ENST00000504761 ITGAXP20702 1163 aa13.79□□□□□ -0.2
TCOF1-207ENST00000504761 HOXD9P28356 352 aaPredicted RBP13.79□□□□□ -0.2
TCOF1-207ENST00000504761 ADSLP30566 484 aaPredicted RBP13.79□□□□□ -0.2
TCOF1-207ENST00000504761 HSPB3Q12988 150 aa13.79□□□□□ -0.2
TCOF1-207ENST00000504761 OTUD1Q5VV17 481 aaPredicted RBP13.79□□□□□ -0.2
TCOF1-207ENST00000504761 TRIM40Q6P9F5 258 aa13.79□□□□□ -0.2
TCOF1-207ENST00000504761 ANKRD33Q7Z3H0 272 aa13.79□□□□□ -0.2
TCOF1-207ENST00000504761 HEATR4Q86WZ0 1026 aa13.79□□□□□ -0.2
TCOF1-207ENST00000504761 SCRN2Q96FV2 425 aa13.79□□□□□ -0.2
TCOF1-207ENST00000504761 RANBP9Q96S59 729 aa13.79□□□□□ -0.2
TCOF1-207ENST00000504761 TRIM8Q9BZR9 551 aa13.79□□□□□ -0.2
TCOF1-207ENST00000504761 IL17CQ9P0M4 197 aa13.79□□□□□ -0.2
TCOF1-207ENST00000504761 PAPPA2Q9BXP8 1791 aa13.79□□□□□ -0.2
TCOF1-207ENST00000504761 SRCAPQ6ZRS2 3230 aa13.79□□□□□ -0.2
TCOF1-207ENST00000504761 KIAA1217Q5T5P2 1943 aa13.79□□□□□ -0.2
TCOF1-207ENST00000504761 WASH4PA8MWX3 477 aa13.79□□□□□ -0.2
TCOF1-207ENST00000504761 G6PDP11413 515 aa13.79□□□□□ -0.2
TCOF1-207ENST00000504761 MTHFD1P11586 935 aaKnown RBP13.79□□□□□ -0.2
TCOF1-207ENST00000504761 AP1S2P56377 157 aa13.79□□□□□ -0.2
TCOF1-207ENST00000504761 SEMA3BQ13214 749 aa13.79□□□□□ -0.2
TCOF1-207ENST00000504761 HKDC1Q2TB90 917 aa13.79□□□□□ -0.2
TCOF1-207ENST00000504761 C18orf21Q32NC0 220 aaPredicted RBP13.79□□□□□ -0.2
TCOF1-207ENST00000504761 AAGABQ6PD74 315 aa13.79□□□□□ -0.2
TCOF1-207ENST00000504761 C16orf62Q7Z3J2 963 aa13.79□□□□□ -0.2
TCOF1-207ENST00000504761 ISCA2Q86U28 154 aa13.79□□□□□ -0.2
TCOF1-207ENST00000504761 ADGRG2Q8IZP9 1017 aa13.79□□□□□ -0.2
TCOF1-207ENST00000504761 OR52B6Q8NGF0 335 aa13.79□□□□□ -0.2
TCOF1-207ENST00000504761 SRMSQ9H3Y6 488 aa13.79□□□□□ -0.2
TCOF1-207ENST00000504761 SCN1AP35498 2009 aa13.79□□□□□ -0.2
TCOF1-207ENST00000504761 MGRN1O60291 552 aa13.78□□□□□ -0.2
TCOF1-207ENST00000504761 ACRV1P26436 265 aa13.78□□□□□ -0.2
TCOF1-207ENST00000504761 PEX2P28328 305 aa13.78□□□□□ -0.2
TCOF1-207ENST00000504761 RPL3P39023 403 aaKnown RBP13.78□□□□□ -0.2
TCOF1-207ENST00000504761 RIPK1Q13546 671 aa13.78□□□□□ -0.2
TCOF1-207ENST00000504761 UNC50Q53HI1 259 aa13.78□□□□□ -0.2
TCOF1-207ENST00000504761 ANXA8L1Q5VT79 327 aa13.78□□□□□ -0.2
TCOF1-207ENST00000504761 THOC6Q86W42 341 aaKnown RBP13.78□□□□□ -0.2
TCOF1-207ENST00000504761 SUPV3L1Q8IYB8 786 aaKnown RBP eCLIP13.78□□□□□ -0.22e-7■■■■■ 102.3
TCOF1-207ENST00000504761 TSTD1Q8NFU3 115 aa13.78□□□□□ -0.2
TCOF1-207ENST00000504761 OR2T34Q8NGX1 318 aa13.78□□□□□ -0.2
TCOF1-207ENST00000504761 OR2T3Q8NH03 318 aa13.78□□□□□ -0.2
TCOF1-207ENST00000504761 PEX13Q92968 403 aa13.78□□□□□ -0.2
TCOF1-207ENST00000504761 ABHD8Q96I13 439 aa13.78□□□□□ -0.2
TCOF1-207ENST00000504761 MCOLN1Q9GZU1 580 aa13.78□□□□□ -0.2
TCOF1-207ENST00000504761 BTBD1Q9H0C5 482 aa13.78□□□□□ -0.2
TCOF1-207ENST00000504761 EBF2Q9HAK2 575 aa13.78□□□□□ -0.2
TCOF1-207ENST00000504761 QSER1Q2KHR3 1735 aa13.78□□□□□ -0.2
TCOF1-207ENST00000504761 ELOVL7A1L3X0 281 aa13.78□□□□□ -0.2
TCOF1-207ENST00000504761 E7ENX8 843 aa13.78□□□□□ -0.2
TCOF1-207ENST00000504761 KLF8O95600 359 aaPredicted RBP13.78□□□□□ -0.2
TCOF1-207ENST00000504761 NUDT14O95848 222 aa13.78□□□□□ -0.2
TCOF1-207ENST00000504761 CDH3P22223 829 aa13.78□□□□□ -0.2
TCOF1-207ENST00000504761 CYP4F3Q08477 520 aa13.78□□□□□ -0.2
TCOF1-207ENST00000504761 PGBD5Q8N414 524 aa13.78□□□□□ -0.2
TCOF1-207ENST00000504761 C1orf52Q8N6N3 182 aaKnown RBP13.78□□□□□ -0.2
TCOF1-207ENST00000504761 ZFP28Q8NHY6 868 aa13.78□□□□□ -0.2
TCOF1-207ENST00000504761 OLIG1Q8TAK6 271 aa13.78□□□□□ -0.2
TCOF1-207ENST00000504761 REXO5Q96IC2 774 aaKnown RBP13.78□□□□□ -0.2
TCOF1-207ENST00000504761 PRICKLE1Q96MT3 831 aaPredicted RBP13.78□□□□□ -0.2
TCOF1-207ENST00000504761 GRIP2Q9C0E4 1043 aa13.78□□□□□ -0.2
TCOF1-207ENST00000504761 DZANK1Q9NVP4 752 aa13.78□□□□□ -0.2
TCOF1-207ENST00000504761 SCHIP1Q9P0W5 487 aaPredicted RBP13.78□□□□□ -0.2
TCOF1-207ENST00000504761 RPS6KA6Q9UK32 745 aa13.78□□□□□ -0.2
TCOF1-207ENST00000504761 DUSP12Q9UNI6 340 aa13.78□□□□□ -0.2
TCOF1-207ENST00000504761 AP4B1Q9Y6B7 739 aa13.78□□□□□ -0.2
TCOF1-207ENST00000504761 TRIM43BA6NCK2 446 aa13.78□□□□□ -0.2
TCOF1-207ENST00000504761 IGLON5A6NGN9 336 aa13.78□□□□□ -0.2
TCOF1-207ENST00000504761 GRID2O43424 1007 aa13.78□□□□□ -0.2
TCOF1-207ENST00000504761 CYP4B1P13584 511 aa13.78□□□□□ -0.2
TCOF1-207ENST00000504761 BUD31P41223 144 aaPredicted RBP13.78□□□□□ -0.2
TCOF1-207ENST00000504761 ETV4P43268 484 aa13.78□□□□□ -0.2
TCOF1-207ENST00000504761 YAP1P46937 504 aaKnown RBP13.78□□□□□ -0.2
TCOF1-207ENST00000504761 OR13J1Q8NGT2 312 aa13.78□□□□□ -0.2
TCOF1-207ENST00000504761 TRIM43Q96BQ3 446 aaPredicted RBP13.78□□□□□ -0.2
TCOF1-207ENST00000504761 TTLL2Q9BWV7 592 aa13.78□□□□□ -0.2
TCOF1-207ENST00000504761 OR51B5Q9H339 312 aa13.78□□□□□ -0.2
TCOF1-207ENST00000504761 VPS29Q9UBQ0 182 aa13.78□□□□□ -0.2
TCOF1-207ENST00000504761 SLC28A2O43868 658 aa13.78□□□□□ -0.2
TCOF1-207ENST00000504761 KRT75O95678 551 aa13.78□□□□□ -0.2
TCOF1-207ENST00000504761 HMGA1P17096 107 aaKnown RBP13.78□□□□□ -0.2
TCOF1-207ENST00000504761 PSMB9P28065 219 aa13.78□□□□□ -0.2
TCOF1-207ENST00000504761 ASMTP46597 345 aa13.78□□□□□ -0.2
TCOF1-207ENST00000504761 SPINT3P49223 89 aa13.78□□□□□ -0.2
Retrieved 100 of 20,778 RNA–protein pairs in 35.8 ms