RNA–Protein interactions for RNA: ENST00000498213.1

USP54-217, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 4

Gene USP54, Length 815 nt, Biotype processed transcript, Subcellular localisation Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-217ENST00000498213 RAB11FIP2Q7L804 512 aa3.95□□□□□ -1.78
USP54-217ENST00000498213 EFL1Q7Z2Z2 1120 aaKnown RBP3.95□□□□□ -1.78
USP54-217ENST00000498213 C1QL2Q7Z5L3 287 aa3.95□□□□□ -1.78
USP54-217ENST00000498213 CBWD2Q8IUF1 395 aa3.95□□□□□ -1.78
USP54-217ENST00000498213 OR2T34Q8NGX1 318 aa3.95□□□□□ -1.78
USP54-217ENST00000498213 PRSS3P2Q8NHM4 247 aa3.95□□□□□ -1.78
USP54-217ENST00000498213 TTC17Q96AE7 1141 aa3.95□□□□□ -1.78
USP54-217ENST00000498213 RITA1Q96K30 269 aa3.95□□□□□ -1.78
USP54-217ENST00000498213 LENG8Q96PV6 779 aaPredicted RBP3.95□□□□□ -1.78
USP54-217ENST00000498213 PRR25Q96S07 402 aa3.95□□□□□ -1.78
USP54-217ENST00000498213 SMR3AQ99954 134 aa3.95□□□□□ -1.78
USP54-217ENST00000498213 DUSP16Q9BY84 665 aa3.95□□□□□ -1.78
USP54-217ENST00000498213 RSPH9Q9H1X1 276 aaPredicted RBP3.95□□□□□ -1.78
USP54-217ENST00000498213 CNGB3Q9NQW8 809 aa3.95□□□□□ -1.78
USP54-217ENST00000498213 SNX15Q9NRS6 342 aa3.95□□□□□ -1.78
USP54-217ENST00000498213 ABCC13Q9NSE7 274 aa3.95□□□□□ -1.78
USP54-217ENST00000498213 DMAC2Q9NW81 257 aa3.95□□□□□ -1.78
USP54-217ENST00000498213 CFAP45Q9UL16 551 aa3.95□□□□□ -1.78
USP54-217ENST00000498213 DRG1Q9Y295 367 aaKnown RBP3.95□□□□□ -1.78
USP54-217ENST00000498213 NUMA1Q14980 2115 aa3.95□□□□□ -1.78
USP54-217ENST00000498213 SCN1AP35498 2009 aa3.95□□□□□ -1.78
USP54-217ENST00000498213 PTPRJQ12913 1337 aa3.95□□□□□ -1.78
USP54-217ENST00000498213 ITIH6Q6UXX5 1313 aa3.95□□□□□ -1.78
USP54-217ENST00000498213 PKD1L1Q8TDX9 2849 aa3.94□□□□□ -1.78
USP54-217ENST00000498213 NBEAL2Q6ZNJ1 2754 aa3.94□□□□□ -1.78
USP54-217ENST00000498213 KIF26BQ2KJY2 2108 aa3.94□□□□□ -1.78
USP54-217ENST00000498213 LY6G6EA0A0G2JKS1 128 aa3.94□□□□□ -1.78
USP54-217ENST00000498213 A0A1W2PR77 199 aa3.94□□□□□ -1.78
USP54-217ENST00000498213 ISM1B1AKI9 464 aa3.94□□□□□ -1.78
USP54-217ENST00000498213 MYO1FO00160 1098 aa3.94□□□□□ -1.78
USP54-217ENST00000498213 XPO1O14980 1071 aaKnown RBP3.94□□□□□ -1.78
USP54-217ENST00000498213 TGFB1I1O43294 461 aa3.94□□□□□ -1.78
USP54-217ENST00000498213 KCNAB3O43448 404 aa3.94□□□□□ -1.78
USP54-217ENST00000498213 KRT86O43790 486 aa3.94□□□□□ -1.78
USP54-217ENST00000498213 CALUO43852 315 aaPredicted RBP3.94□□□□□ -1.78
USP54-217ENST00000498213 TCEA3O75764 348 aa3.94□□□□□ -1.78
USP54-217ENST00000498213 PIAS2O75928 621 aa3.94□□□□□ -1.78
USP54-217ENST00000498213 NEBLO76041 1014 aa3.94□□□□□ -1.78
USP54-217ENST00000498213 ALPPL2P10696 532 aa3.94□□□□□ -1.78
USP54-217ENST00000498213 SLC2A3P11169 496 aa3.94□□□□□ -1.78
USP54-217ENST00000498213 LIFP15018 202 aa3.94□□□□□ -1.78
USP54-217ENST00000498213 GOT1P17174 413 aa3.94□□□□□ -1.78
USP54-217ENST00000498213 KLK2P20151 261 aa3.94□□□□□ -1.78
USP54-217ENST00000498213 GKP32189 559 aa3.94□□□□□ -1.78
USP54-217ENST00000498213 PDX1P52945 283 aa3.94□□□□□ -1.78
USP54-217ENST00000498213 PLK1P53350 603 aa3.94□□□□□ -1.78
USP54-217ENST00000498213 CETN1Q12798 172 aa3.94□□□□□ -1.78
USP54-217ENST00000498213 BIRC3Q13489 604 aa3.94□□□□□ -1.78
USP54-217ENST00000498213 KLF9Q13886 244 aaPredicted RBP3.94□□□□□ -1.78
USP54-217ENST00000498213 ZNF234Q14588 700 aa3.94□□□□□ -1.78
USP54-217ENST00000498213 CLPPQ16740 277 aaPredicted RBP3.94□□□□□ -1.78
USP54-217ENST00000498213 HNRNPA1L2Q32P51 320 aaKnown RBP3.94□□□□□ -1.78
USP54-217ENST00000498213 EDRF1Q3B7T1 1238 aa3.94□□□□□ -1.78
USP54-217ENST00000498213 C10orf120Q5SQS8 335 aa3.94□□□□□ -1.78
USP54-217ENST00000498213 ATP1A1-AS1Q5TC04 95 aa3.94□□□□□ -1.78
USP54-217ENST00000498213 KRT39Q6A163 491 aa3.94□□□□□ -1.78
USP54-217ENST00000498213 ZNF425Q6IV72 752 aa3.94□□□□□ -1.78
USP54-217ENST00000498213 MSANTD2Q6P1R3 559 aa3.94□□□□□ -1.78
USP54-217ENST00000498213 GUSBP11Q6P575 273 aa3.94□□□□□ -1.78
USP54-217ENST00000498213 CLEC20AQ6ZU45 233 aa3.94□□□□□ -1.78
USP54-217ENST00000498213 PAQR9Q6ZVX9 377 aa3.94□□□□□ -1.78
USP54-217ENST00000498213 TRIM69Q86WT6 500 aa3.94□□□□□ -1.78
USP54-217ENST00000498213 GALNT16Q8N428 558 aa3.94□□□□□ -1.78
USP54-217ENST00000498213 ANKRD52Q8NB46 1076 aa3.94□□□□□ -1.78
USP54-217ENST00000498213 OR5B17Q8NGF7 314 aa3.94□□□□□ -1.78
USP54-217ENST00000498213 OR56A3Q8NH54 315 aa3.94□□□□□ -1.78
USP54-217ENST00000498213 OR4C6Q8NH72 309 aa3.94□□□□□ -1.78
USP54-217ENST00000498213 FIBINQ8TAL6 211 aa3.94□□□□□ -1.78
USP54-217ENST00000498213 SLC2A14Q8TDB8 520 aa3.94□□□□□ -1.78
USP54-217ENST00000498213 RNF139Q8WU17 664 aa3.94□□□□□ -1.78
USP54-217ENST00000498213 APOBEC4Q8WW27 367 aaKnown RBP3.94□□□□□ -1.78
USP54-217ENST00000498213 TMEM159Q96B96 161 aa3.94□□□□□ -1.78
USP54-217ENST00000498213 SAAL1Q96ER3 474 aa3.94□□□□□ -1.78
USP54-217ENST00000498213 EPSTI1Q96J88 318 aa3.94□□□□□ -1.78
USP54-217ENST00000498213 SERAC1Q96JX3 654 aa3.94□□□□□ -1.78
USP54-217ENST00000498213 HSFY1Q96LI6 401 aa3.94□□□□□ -1.78
USP54-217ENST00000498213 CCDC114Q96M63 670 aa3.94□□□□□ -1.78
USP54-217ENST00000498213 HS6ST2Q96MM7 605 aa3.94□□□□□ -1.78
USP54-217ENST00000498213 FAM118BQ9BPY3 351 aa3.94□□□□□ -1.78
USP54-217ENST00000498213 MRPL45Q9BRJ2 306 aaKnown RBP3.94□□□□□ -1.78
USP54-217ENST00000498213 MED10Q9BTT4 135 aa3.94□□□□□ -1.78
USP54-217ENST00000498213 SMURF2Q9HAU4 748 aa3.94□□□□□ -1.78
USP54-217ENST00000498213 POLD4Q9HCU8 107 aa3.94□□□□□ -1.78
USP54-217ENST00000498213 CPNE7Q9UBL6 633 aa3.94□□□□□ -1.78
USP54-217ENST00000498213 CSNK1G3Q9Y6M4 447 aa3.94□□□□□ -1.78
USP54-217ENST00000498213 U3KQA8 63 aa3.94□□□□□ -1.78
USP54-217ENST00000498213 MYH11P35749 1972 aa3.94□□□□□ -1.78
USP54-217ENST00000498213 MAP1AP78559 2803 aaPredicted RBP3.94□□□□□ -1.78
USP54-217ENST00000498213 CROCCQ5TZA2 2017 aa3.94□□□□□ -1.78
USP54-217ENST00000498213 PKDREJQ9NTG1 2253 aa3.93□□□□□ -1.78
USP54-217ENST00000498213 PRRC2CQ9Y520 2896 aaKnown RBP3.93□□□□□ -1.78
USP54-217ENST00000498213 PRRC2AP48634 2157 aaKnown RBP3.93□□□□□ -1.78
USP54-217ENST00000498213 ANK1P16157 1881 aa3.93□□□□□ -1.78
USP54-217ENST00000498213 ZNF559-ZNF177A0A0A6YYI6 481 aaPredicted RBP3.93□□□□□ -1.78
USP54-217ENST00000498213 EDDM13A0A1B0GTR0 161 aa3.93□□□□□ -1.78
USP54-217ENST00000498213 GOLGA6CA6NDK9 693 aa3.93□□□□□ -1.78
USP54-217ENST00000498213 GOLGA6BA6NDN3 693 aa3.93□□□□□ -1.78
USP54-217ENST00000498213 HHLA1C9JL84 531 aa3.93□□□□□ -1.78
USP54-217ENST00000498213 PRAMEF26H0Y7S4 382 aa3.93□□□□□ -1.78
USP54-217ENST00000498213 RAB27BO00194 218 aa3.93□□□□□ -1.78
Retrieved 100 of 20,778 RNA–protein pairs in 60.9 ms