RNA–Protein interactions for RNA: ENST00000494566.5

CCDC88B-210, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 2

Gene CCDC88B, Length 2,909 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-210ENST00000494566 DET1Q7L5Y6 550 aa16.19■□□□□ 0.18
CCDC88B-210ENST00000494566 KRTCAP2Q8N6L1 136 aa16.19■□□□□ 0.18
CCDC88B-210ENST00000494566 MFSD2AQ8NA29 543 aa16.19■□□□□ 0.18
CCDC88B-210ENST00000494566 ZUFSPQ96AP4 578 aa16.19■□□□□ 0.18
CCDC88B-210ENST00000494566 BEGAINQ9BUH8 593 aa16.19■□□□□ 0.18
CCDC88B-210ENST00000494566 NTN4Q9HB63 628 aa16.19■□□□□ 0.18
CCDC88B-210ENST00000494566 SACM1LQ9NTJ5 587 aa16.19■□□□□ 0.18
CCDC88B-210ENST00000494566 FAIMQ9NVQ4 179 aa16.19■□□□□ 0.18
CCDC88B-210ENST00000494566 FAM8A1Q9UBU6 413 aa16.19■□□□□ 0.18
CCDC88B-210ENST00000494566 TRIM17Q9Y577 477 aa16.19■□□□□ 0.18
CCDC88B-210ENST00000494566 PCDHGA8Q9Y5G5 932 aa16.19■□□□□ 0.18
CCDC88B-210ENST00000494566 NPIPB15A6NHN6 443 aaPredicted RBP16.18■□□□□ 0.18
CCDC88B-210ENST00000494566 VPS4BO75351 444 aa16.18■□□□□ 0.18
CCDC88B-210ENST00000494566 E2F6O75461 281 aa16.18■□□□□ 0.18
CCDC88B-210ENST00000494566 INMTO95050 263 aa16.18■□□□□ 0.18
CCDC88B-210ENST00000494566 PSMA3P25788 255 aa16.18■□□□□ 0.18
CCDC88B-210ENST00000494566 PRMT9Q6P2P2 845 aa16.18■□□□□ 0.18
CCDC88B-210ENST00000494566 CYP20A1Q6UW02 462 aa16.18■□□□□ 0.18
CCDC88B-210ENST00000494566 GAREM2Q75VX8 874 aa16.18■□□□□ 0.18
CCDC88B-210ENST00000494566 CNIH3Q8TBE1 160 aa16.18■□□□□ 0.18
CCDC88B-210ENST00000494566 BRINP2Q9C0B6 783 aa16.18■□□□□ 0.18
CCDC88B-210ENST00000494566 IL21Q9HBE4 155 aa16.18■□□□□ 0.18
CCDC88B-210ENST00000494566 MAGEE1Q9HCI5 957 aa16.18■□□□□ 0.18
CCDC88B-210ENST00000494566 RIC8BQ9NVN3 520 aa16.18■□□□□ 0.18
CCDC88B-210ENST00000494566 NUDT4Q9NZJ9 180 aa16.18■□□□□ 0.18
CCDC88B-210ENST00000494566 LEF1Q9UJU2 399 aaPredicted RBP16.18■□□□□ 0.18
CCDC88B-210ENST00000494566 LSM1O15116 133 aaKnown RBP16.18■□□□□ 0.18
CCDC88B-210ENST00000494566 MITFO75030 526 aaPredicted RBP16.18■□□□□ 0.18
CCDC88B-210ENST00000494566 SH3BGRLO75368 114 aa16.18■□□□□ 0.18
CCDC88B-210ENST00000494566 EEDO75530 441 aaKnown RBP16.18■□□□□ 0.18
CCDC88B-210ENST00000494566 TRBC1P01850 177 aa16.18■□□□□ 0.18
CCDC88B-210ENST00000494566 ZNF7P17097 686 aaPredicted RBP16.18■□□□□ 0.18
CCDC88B-210ENST00000494566 ARSFP54793 590 aa16.18■□□□□ 0.18
CCDC88B-210ENST00000494566 TLE2Q04725 743 aa16.18■□□□□ 0.18
CCDC88B-210ENST00000494566 TRAF3Q13114 568 aa16.18■□□□□ 0.18
CCDC88B-210ENST00000494566 TRIM60Q495X7 471 aa16.18■□□□□ 0.18
CCDC88B-210ENST00000494566 GCNT7Q6ZNI0 430 aa16.18■□□□□ 0.18
CCDC88B-210ENST00000494566 Q6ZNX1 250 aa16.18■□□□□ 0.18
CCDC88B-210ENST00000494566 TBRG4Q969Z0 631 aaKnown RBP eCLIP16.18■□□□□ 0.18
CCDC88B-210ENST00000494566 DUS3LQ96G46 650 aaKnown RBP16.18■□□□□ 0.18
CCDC88B-210ENST00000494566 WWOXQ9NZC7 414 aa16.18■□□□□ 0.18
CCDC88B-210ENST00000494566 HACD3Q9P035 362 aa16.18■□□□□ 0.18
CCDC88B-210ENST00000494566 VAPAQ9P0L0 249 aa16.18■□□□□ 0.18
CCDC88B-210ENST00000494566 KLQ9UEF7 1012 aa16.18■□□□□ 0.18
CCDC88B-210ENST00000494566 CD84Q9UIB8 345 aa16.18■□□□□ 0.18
CCDC88B-210ENST00000494566 INTS6Q9UL03 887 aaKnown RBP16.18■□□□□ 0.18
CCDC88B-210ENST00000494566 ANGPTL3Q9Y5C1 460 aa16.18■□□□□ 0.18
CCDC88B-210ENST00000494566 S100BP04271 92 aaPredicted RBP16.18■□□□□ 0.18
CCDC88B-210ENST00000494566 EPHB3P54753 998 aa16.18■□□□□ 0.18
CCDC88B-210ENST00000494566 BNIP2Q12982 314 aa16.18■□□□□ 0.18
CCDC88B-210ENST00000494566 DNASE1L3Q13609 305 aa16.18■□□□□ 0.18
CCDC88B-210ENST00000494566 CMTM8Q8IZV2 173 aa16.18■□□□□ 0.18
CCDC88B-210ENST00000494566 SLAIN1Q8ND83 568 aa16.18■□□□□ 0.18
CCDC88B-210ENST00000494566 GPR26Q8NDV2 337 aa16.18■□□□□ 0.18
CCDC88B-210ENST00000494566 SLC22A17Q8WUG5 538 aa16.18■□□□□ 0.18
CCDC88B-210ENST00000494566 TRIM54Q9BYV2 358 aa16.18■□□□□ 0.18
CCDC88B-210ENST00000494566 GPBP1L1Q9HC44 474 aaPredicted RBP16.18■□□□□ 0.18
CCDC88B-210ENST00000494566 INIPQ9NRY2 104 aa16.18■□□□□ 0.18
CCDC88B-210ENST00000494566 PCDHB3Q9Y5E6 796 aa16.18■□□□□ 0.18
CCDC88B-210ENST00000494566 GLYATL1P3A0A0U1RQE8 302 aa16.17■□□□□ 0.18
CCDC88B-210ENST00000494566 TMEM247A6NEH6 219 aa16.17■□□□□ 0.18
CCDC88B-210ENST00000494566 A8MU76 341 aa16.17■□□□□ 0.18
CCDC88B-210ENST00000494566 TEX28O15482 410 aa16.17■□□□□ 0.18
CCDC88B-210ENST00000494566 PRKG2Q13237 762 aa16.17■□□□□ 0.18
CCDC88B-210ENST00000494566 SIM2Q14190 667 aaPredicted RBP16.17■□□□□ 0.18
CCDC88B-210ENST00000494566 SPRED1Q7Z699 444 aa16.17■□□□□ 0.18
CCDC88B-210ENST00000494566 ADAMTSL2Q86TH1 951 aa16.17■□□□□ 0.18
CCDC88B-210ENST00000494566 RBM23Q86U06 439 aaKnown RBP16.17■□□□□ 0.18
CCDC88B-210ENST00000494566 ZFAND4Q86XD8 727 aa16.17■□□□□ 0.18
CCDC88B-210ENST00000494566 DCAF4L2Q8NA75 395 aa16.17■□□□□ 0.18
CCDC88B-210ENST00000494566 SKA2Q8WVK7 121 aaPredicted RBP16.17■□□□□ 0.18
CCDC88B-210ENST00000494566 CIDEBQ9UHD4 219 aa16.17■□□□□ 0.18
CCDC88B-210ENST00000494566 PCDHGA11Q9Y5H2 935 aa16.17■□□□□ 0.18
CCDC88B-210ENST00000494566 A0A1W2PRU2 124 aa16.17■□□□□ 0.18
CCDC88B-210ENST00000494566 MTX2O75431 263 aa16.17■□□□□ 0.18
CCDC88B-210ENST00000494566 ZNF821O75541 412 aaPredicted RBP16.17■□□□□ 0.18
CCDC88B-210ENST00000494566 CST1P01037 141 aa16.17■□□□□ 0.18
CCDC88B-210ENST00000494566 URODP06132 367 aa16.17■□□□□ 0.18
CCDC88B-210ENST00000494566 OPRL1P41146 370 aa16.17■□□□□ 0.18
CCDC88B-210ENST00000494566 ARHGEF7Q14155 803 aa16.17■□□□□ 0.18
CCDC88B-210ENST00000494566 CTU2Q2VPK5 515 aaKnown RBP16.17■□□□□ 0.18
CCDC88B-210ENST00000494566 DCDC5Q6ZRR9 648 aa16.17■□□□□ 0.18
CCDC88B-210ENST00000494566 STK40Q8N2I9 435 aa16.17■□□□□ 0.18
CCDC88B-210ENST00000494566 C10orf111Q8N326 155 aa16.17■□□□□ 0.18
CCDC88B-210ENST00000494566 VWCEQ96DN2 955 aa16.17■□□□□ 0.18
CCDC88B-210ENST00000494566 TRMT2BQ96GJ1 504 aaKnown RBP16.17■□□□□ 0.18
CCDC88B-210ENST00000494566 C2orf49Q9BVC5 232 aaPredicted RBP16.17■□□□□ 0.18
CCDC88B-210ENST00000494566 MIR1-1HGQ9H1L0 117 aa16.17■□□□□ 0.18
CCDC88B-210ENST00000494566 SH3GLB1Q9Y371 365 aa16.17■□□□□ 0.18
CCDC88B-210ENST00000494566 FAM234BA2RU67 622 aa16.16■□□□□ 0.18
CCDC88B-210ENST00000494566 FUOMA2VDF0 154 aa16.16■□□□□ 0.18
CCDC88B-210ENST00000494566 H0YJX3 145 aa16.16■□□□□ 0.18
CCDC88B-210ENST00000494566 RAD51BO15315 384 aa16.16■□□□□ 0.18
CCDC88B-210ENST00000494566 LRATO95237 230 aa16.16■□□□□ 0.18
CCDC88B-210ENST00000494566 FMO3P31513 532 aa16.16■□□□□ 0.18
CCDC88B-210ENST00000494566 MAP2K4P45985 399 aa16.16■□□□□ 0.18
CCDC88B-210ENST00000494566 PLA2G16P53816 162 aa16.16■□□□□ 0.18
CCDC88B-210ENST00000494566 AQP6Q13520 282 aa16.16■□□□□ 0.18
CCDC88B-210ENST00000494566 PDCD4Q53EL6 469 aaKnown RBP16.16■□□□□ 0.18
CCDC88B-210ENST00000494566 TMEM236Q5W0B7 351 aa16.16■□□□□ 0.18
Retrieved 100 of 20,778 RNA–protein pairs in 22.2 ms