RNA–Protein interactions for RNA: ENST00000485955.1

VPS41-213, Transcript of VPS41, HOPS complex subunit, humanhuman

TSL 4

Gene VPS41, Length 571 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS41-213ENST00000485955 BAIAP3O94812 1187 aa3.38□□□□□ -1.87
VPS41-213ENST00000485955 ACSL1P33121 698 aa3.38□□□□□ -1.87
VPS41-213ENST00000485955 CHRNA7P36544 502 aa3.38□□□□□ -1.87
VPS41-213ENST00000485955 TPD52P55327 224 aaPredicted RBP3.38□□□□□ -1.87
VPS41-213ENST00000485955 AIMP2Q13155 320 aaKnown RBP3.38□□□□□ -1.87
VPS41-213ENST00000485955 PHLDA2Q53GA4 152 aa3.38□□□□□ -1.87
VPS41-213ENST00000485955 FAAP20Q6NZ36 180 aa3.38□□□□□ -1.87
VPS41-213ENST00000485955 ZNF613Q6PF04 617 aa3.38□□□□□ -1.87
VPS41-213ENST00000485955 TMEM139Q8IV31 216 aa3.38□□□□□ -1.87
VPS41-213ENST00000485955 BMPERQ8N8U9 685 aa3.38□□□□□ -1.87
VPS41-213ENST00000485955 TRIML1Q8N9V2 468 aa3.38□□□□□ -1.87
VPS41-213ENST00000485955 MAGED4Q96JG8 741 aa3.38□□□□□ -1.87
VPS41-213ENST00000485955 SYT15Q9BQS2 421 aa3.38□□□□□ -1.87
VPS41-213ENST00000485955 CHCHD6Q9BRQ6 235 aa3.38□□□□□ -1.87
VPS41-213ENST00000485955 UBXN6Q9BZV1 441 aa3.38□□□□□ -1.87
VPS41-213ENST00000485955 SPATC1LQ9H0A9 340 aa3.38□□□□□ -1.87
VPS41-213ENST00000485955 ARHGEF38Q9NXL2 777 aa3.38□□□□□ -1.87
VPS41-213ENST00000485955 SUCLA2Q9P2R7 463 aaPredicted RBP3.38□□□□□ -1.87
VPS41-213ENST00000485955 ZNF541Q9H0D2 1346 aa3.38□□□□□ -1.87
VPS41-213ENST00000485955 A0A1W2PQ09 198 aa3.37□□□□□ -1.87
VPS41-213ENST00000485955 OR10H2O60403 315 aa3.37□□□□□ -1.87
VPS41-213ENST00000485955 WDPCPO95876 746 aa3.37□□□□□ -1.87
VPS41-213ENST00000485955 PAX3P23760 479 aa3.37□□□□□ -1.87
VPS41-213ENST00000485955 KRTAP5-9P26371 169 aa3.37□□□□□ -1.87
VPS41-213ENST00000485955 PSMB10P40306 273 aa3.37□□□□□ -1.87
VPS41-213ENST00000485955 SLC15A1P46059 708 aa3.37□□□□□ -1.87
VPS41-213ENST00000485955 RXRGP48443 463 aa3.37□□□□□ -1.87
VPS41-213ENST00000485955 PNLIPRP2P54317 469 aa3.37□□□□□ -1.87
VPS41-213ENST00000485955 PRKCZQ05513 592 aa3.37□□□□□ -1.87
VPS41-213ENST00000485955 SNAI3Q3KNW1 292 aa3.37□□□□□ -1.87
VPS41-213ENST00000485955 XKR3Q5GH77 459 aa3.37□□□□□ -1.87
VPS41-213ENST00000485955 TEX38Q6PEX7 206 aa3.37□□□□□ -1.87
VPS41-213ENST00000485955 HAUS6Q7Z4H7 955 aa3.37□□□□□ -1.87
VPS41-213ENST00000485955 COMMD2Q86X83 199 aa3.37□□□□□ -1.87
VPS41-213ENST00000485955 MOSPD2Q8NHP6 518 aa3.37□□□□□ -1.87
VPS41-213ENST00000485955 IRGQQ8WZA9 623 aa3.37□□□□□ -1.87
VPS41-213ENST00000485955 SUSD6Q92537 303 aa3.37□□□□□ -1.87
VPS41-213ENST00000485955 PAFAH2Q99487 392 aa3.37□□□□□ -1.87
VPS41-213ENST00000485955 RBM4BQ9BQ04 359 aaKnown RBP3.37□□□□□ -1.87
VPS41-213ENST00000485955 BTBD10Q9BSF8 475 aa3.37□□□□□ -1.87
VPS41-213ENST00000485955 FNDC11Q9BVV2 318 aa3.37□□□□□ -1.87
VPS41-213ENST00000485955 FGFBP2Q9BYJ0 223 aa3.37□□□□□ -1.87
VPS41-213ENST00000485955 P2RY12Q9H244 342 aa3.37□□□□□ -1.87
VPS41-213ENST00000485955 ZDHHC2Q9UIJ5 367 aa3.37□□□□□ -1.87
VPS41-213ENST00000485955 ZNF215Q9UL58 517 aaPredicted RBP3.37□□□□□ -1.87
VPS41-213ENST00000485955 ZNF148Q9UQR1 794 aa3.37□□□□□ -1.87
VPS41-213ENST00000485955 HMGXB3Q12766 1538 aa3.37□□□□□ -1.87
VPS41-213ENST00000485955 PPRC1Q5VV67 1664 aaKnown RBP3.36□□□□□ -1.87
VPS41-213ENST00000485955 RSF1Q96T23 1441 aaPredicted RBP3.36□□□□□ -1.87
VPS41-213ENST00000485955 IGLV7-46A0A075B6I9 117 aa3.36□□□□□ -1.87
VPS41-213ENST00000485955 B4DLN1 442 aa3.36□□□□□ -1.87
VPS41-213ENST00000485955 CTDSP2O14595 271 aa3.36□□□□□ -1.87
VPS41-213ENST00000485955 KLF11O14901 512 aa3.36□□□□□ -1.87
VPS41-213ENST00000485955 ADAMDEC1O15204 470 aa3.36□□□□□ -1.87
VPS41-213ENST00000485955 CLDN1O95832 211 aa3.36□□□□□ -1.87
VPS41-213ENST00000485955 TRIM21P19474 475 aaKnown RBP3.36□□□□□ -1.87
VPS41-213ENST00000485955 ZNF10P21506 573 aaPredicted RBP3.36□□□□□ -1.87
VPS41-213ENST00000485955 KRT2P35908 639 aa3.36□□□□□ -1.87
VPS41-213ENST00000485955 MRPL12P52815 198 aaKnown RBP3.36□□□□□ -1.87
VPS41-213ENST00000485955 SIRPAP78324 504 aa3.36□□□□□ -1.87
VPS41-213ENST00000485955 IRX6P78412 446 aaPredicted RBP3.36□□□□□ -1.87
VPS41-213ENST00000485955 CDK3Q00526 305 aa3.36□□□□□ -1.87
VPS41-213ENST00000485955 ENPP2Q13822 863 aa3.36□□□□□ -1.87
VPS41-213ENST00000485955 ITPRIPL2Q3MIP1 535 aa3.36□□□□□ -1.87
VPS41-213ENST00000485955 DUSP28Q4G0W2 176 aa3.36□□□□□ -1.87
VPS41-213ENST00000485955 IL27RAQ6UWB1 636 aa3.36□□□□□ -1.87
VPS41-213ENST00000485955 TMCO3Q6UWJ1 677 aa3.36□□□□□ -1.87
VPS41-213ENST00000485955 PTAR1Q7Z6K3 402 aaPredicted RBP3.36□□□□□ -1.87
VPS41-213ENST00000485955 ADIPOR2Q86V24 386 aa3.36□□□□□ -1.87
VPS41-213ENST00000485955 CEP57Q86XR8 500 aa3.36□□□□□ -1.87
VPS41-213ENST00000485955 LACC1Q8IV20 430 aa3.36□□□□□ -1.87
VPS41-213ENST00000485955 ARHGAP24Q8N264 748 aa3.36□□□□□ -1.87
VPS41-213ENST00000485955 FBXO39Q8N4B4 442 aa3.36□□□□□ -1.87
VPS41-213ENST00000485955 C1orf131Q8NDD1 294 aaKnown RBP3.36□□□□□ -1.87
VPS41-213ENST00000485955 NEK1Q96PY6 1258 aa3.36□□□□□ -1.87
VPS41-213ENST00000485955 CDRT15Q96T59 188 aa3.36□□□□□ -1.87
VPS41-213ENST00000485955 OLFM1Q99784 485 aa3.36□□□□□ -1.87
VPS41-213ENST00000485955 PKP2Q99959 881 aa3.36□□□□□ -1.87
VPS41-213ENST00000485955 DCTN5Q9BTE1 182 aa3.36□□□□□ -1.87
VPS41-213ENST00000485955 LMF2Q9BU23 707 aaKnown RBP3.36□□□□□ -1.87
VPS41-213ENST00000485955 CLEC7AQ9BXN2 247 aa3.36□□□□□ -1.87
VPS41-213ENST00000485955 RPS10P5Q9NQ39 176 aa3.36□□□□□ -1.87
VPS41-213ENST00000485955 B3GAT1Q9P2W7 334 aa3.36□□□□□ -1.87
VPS41-213ENST00000485955 LRWD1Q9UFC0 647 aa3.36□□□□□ -1.87
VPS41-213ENST00000485955 ATAD2BQ9ULI0 1458 aa3.35□□□□□ -1.87
VPS41-213ENST00000485955 URB2Q14146 1524 aaKnown RBP3.35□□□□□ -1.87
VPS41-213ENST00000485955 EIF4G3O43432 1585 aaKnown RBP3.35□□□□□ -1.87
VPS41-213ENST00000485955 KDM6BO15054 1643 aa3.35□□□□□ -1.87
VPS41-213ENST00000485955 FEZF1A0PJY2 475 aa3.35□□□□□ -1.87
VPS41-213ENST00000485955 MED24O75448 989 aa3.35□□□□□ -1.87
VPS41-213ENST00000485955 GJB3O75712 270 aa3.35□□□□□ -1.87
VPS41-213ENST00000485955 CA6P23280 308 aa3.35□□□□□ -1.87
VPS41-213ENST00000485955 CREB5Q02930 508 aa3.35□□□□□ -1.87
VPS41-213ENST00000485955 TAF13Q15543 124 aa3.35□□□□□ -1.87
VPS41-213ENST00000485955 IGSF11Q5DX21 431 aa3.35□□□□□ -1.87
VPS41-213ENST00000485955 METTL7BQ6UX53 244 aa3.35□□□□□ -1.87
VPS41-213ENST00000485955 SZRD1Q7Z422 152 aa3.35□□□□□ -1.87
VPS41-213ENST00000485955 KBTBD6Q86V97 674 aa3.35□□□□□ -1.87
VPS41-213ENST00000485955 TEX19Q8NA77 164 aa3.35□□□□□ -1.87
VPS41-213ENST00000485955 PPFIBP2Q8ND30 876 aa3.35□□□□□ -1.87
Retrieved 100 of 20,778 RNA–protein pairs in 55.7 ms