RNA–Protein interactions for RNA: ENST00000474432.1

COL7A1-209, Transcript of collagen type VII alpha 1 chain, humanhuman

TSL 3

Gene COL7A1, Length 728 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL7A1-209ENST00000474432 NR1D1P20393 614 aa17.96■□□□□ 0.47
COL7A1-209ENST00000474432 GRB7Q14451 532 aa17.96■□□□□ 0.47
COL7A1-209ENST00000474432 UGT8Q16880 541 aa17.96■□□□□ 0.47
COL7A1-209ENST00000474432 PCID2Q5JVF3 399 aa17.96■□□□□ 0.47
COL7A1-209ENST00000474432 IZUMO3Q5VZ72 239 aa17.96■□□□□ 0.47
COL7A1-209ENST00000474432 ZNF385CQ66K41 422 aaPredicted RBP17.96■□□□□ 0.47
COL7A1-209ENST00000474432 SLC22A15Q8IZD6 547 aa17.96■□□□□ 0.47
COL7A1-209ENST00000474432 PRELID2Q8N945 189 aa17.96■□□□□ 0.47
COL7A1-209ENST00000474432 MR1Q95460 341 aa17.96■□□□□ 0.47
COL7A1-209ENST00000474432 CARD6Q9BX69 1037 aa17.96■□□□□ 0.47
COL7A1-209ENST00000474432 TRIM55Q9BYV6 548 aa17.96■□□□□ 0.47
COL7A1-209ENST00000474432 PLAGL1Q9UM63 463 aa17.96■□□□□ 0.47
COL7A1-209ENST00000474432 FARSAQ9Y285 508 aaKnown RBP17.96■□□□□ 0.47
COL7A1-209ENST00000474432 ZKSCAN5Q9Y2L8 839 aa17.96■□□□□ 0.47
COL7A1-209ENST00000474432 FLNCQ14315 2725 aa17.95■□□□□ 0.46
COL7A1-209ENST00000474432 TCRBV7S3A2A0A539 114 aa17.95■□□□□ 0.46
COL7A1-209ENST00000474432 TMEM150CB9EJG8 249 aa17.95■□□□□ 0.46
COL7A1-209ENST00000474432 CTSBP07858 339 aa17.95■□□□□ 0.46
COL7A1-209ENST00000474432 CHRM5P08912 532 aaPredicted RBP17.95■□□□□ 0.46
COL7A1-209ENST00000474432 ARNTP27540 789 aa17.95■□□□□ 0.46
COL7A1-209ENST00000474432 NMBRP28336 390 aa17.95■□□□□ 0.46
COL7A1-209ENST00000474432 CXCR5P32302 372 aa17.95■□□□□ 0.46
COL7A1-209ENST00000474432 SHMT2P34897 504 aa17.95■□□□□ 0.46
COL7A1-209ENST00000474432 CSRP3P50461 194 aa17.95■□□□□ 0.46
COL7A1-209ENST00000474432 PMS2P54278 862 aa17.95■□□□□ 0.46
COL7A1-209ENST00000474432 CSE1LP55060 971 aaKnown RBP17.95■□□□□ 0.46
COL7A1-209ENST00000474432 SESN2P58004 480 aaPredicted RBP17.95■□□□□ 0.46
COL7A1-209ENST00000474432 PRAMEP78395 509 aa17.95■□□□□ 0.46
COL7A1-209ENST00000474432 PLOD1Q02809 727 aaPredicted RBP17.95■□□□□ 0.46
COL7A1-209ENST00000474432 TLE1Q04724 770 aa17.95■□□□□ 0.46
COL7A1-209ENST00000474432 FASTKD1Q53R41 847 aaKnown RBP17.95■□□□□ 0.46
COL7A1-209ENST00000474432 APLFQ8IW19 511 aaPredicted RBP17.95■□□□□ 0.46
COL7A1-209ENST00000474432 KRT222Q8N1A0 295 aa17.95■□□□□ 0.46
COL7A1-209ENST00000474432 PPHLN1Q8NEY8 458 aaKnown RBP17.95■□□□□ 0.46
COL7A1-209ENST00000474432 ADAMTS17Q8TE56 1095 aa17.95■□□□□ 0.46
COL7A1-209ENST00000474432 CPT1BQ92523 772 aa17.95■□□□□ 0.46
COL7A1-209ENST00000474432 TBRG4Q969Z0 631 aaKnown RBP eCLIP17.95■□□□□ 0.46
COL7A1-209ENST00000474432 EPN3Q9H201 632 aa17.95■□□□□ 0.46
COL7A1-209ENST00000474432 P2RY12Q9H244 342 aa17.95■□□□□ 0.46
COL7A1-209ENST00000474432 CLMPQ9H6B4 373 aa17.95■□□□□ 0.46
COL7A1-209ENST00000474432 POLG2Q9UHN1 485 aa17.95■□□□□ 0.46
COL7A1-209ENST00000474432 TLK1Q9UKI8 766 aa17.95■□□□□ 0.46
COL7A1-209ENST00000474432 TP53TG5Q9Y2B4 290 aa17.95■□□□□ 0.46
COL7A1-209ENST00000474432 TNRC6AQ8NDV7 1962 aaKnown RBP17.95■□□□□ 0.46
COL7A1-209ENST00000474432 CCDC88CQ9P219 2028 aa17.94■□□□□ 0.46
COL7A1-209ENST00000474432 PDGFAP04085 211 aa17.94■□□□□ 0.46
COL7A1-209ENST00000474432 KCNC4Q03721 635 aa17.94■□□□□ 0.46
COL7A1-209ENST00000474432 FAM69BQ5VUD6 431 aa17.94■□□□□ 0.46
COL7A1-209ENST00000474432 FAM198BQ6UWH4 519 aa17.94■□□□□ 0.46
COL7A1-209ENST00000474432 SYVN1Q86TM6 617 aa17.94■□□□□ 0.46
COL7A1-209ENST00000474432 C19orf47Q8N9M1 422 aaKnown RBP17.94■□□□□ 0.46
COL7A1-209ENST00000474432 LMNTD1Q8N9Z9 388 aa17.94■□□□□ 0.46
COL7A1-209ENST00000474432 LINC01555Q8NAE3 123 aa17.94■□□□□ 0.46
COL7A1-209ENST00000474432 CHRNA10Q9GZZ6 450 aa17.94■□□□□ 0.46
COL7A1-209ENST00000474432 CATSPERZQ9NTU4 200 aa17.94■□□□□ 0.46
COL7A1-209ENST00000474432 OR6C2Q9NZP2 312 aa17.94■□□□□ 0.46
COL7A1-209ENST00000474432 TDRKHQ9Y2W6 561 aaKnown RBP17.94■□□□□ 0.46
COL7A1-209ENST00000474432 CD3EAPO15446 510 aaKnown RBP17.93■□□□□ 0.46
COL7A1-209ENST00000474432 CEP104O60308 925 aa17.93■□□□□ 0.46
COL7A1-209ENST00000474432 DNAJB5O75953 348 aa17.93■□□□□ 0.46
COL7A1-209ENST00000474432 SLCO2B1O94956 709 aa17.93■□□□□ 0.46
COL7A1-209ENST00000474432 RAB40ALP0C0E4 278 aa17.93■□□□□ 0.46
COL7A1-209ENST00000474432 AOAHP28039 575 aa17.93■□□□□ 0.46
COL7A1-209ENST00000474432 CASRP41180 1078 aa17.93■□□□□ 0.46
COL7A1-209ENST00000474432 NPY2RP49146 381 aa17.93■□□□□ 0.46
COL7A1-209ENST00000474432 RPS15P62841 145 aaKnown RBP17.93■□□□□ 0.46
COL7A1-209ENST00000474432 BASP1P80723 227 aaKnown RBP17.93■□□□□ 0.46
COL7A1-209ENST00000474432 HSPA14Q0VDF9 509 aa17.93■□□□□ 0.46
COL7A1-209ENST00000474432 KYNUQ16719 465 aa17.93■□□□□ 0.46
COL7A1-209ENST00000474432 SYTL3Q4VX76 610 aa17.93■□□□□ 0.46
COL7A1-209ENST00000474432 LACTB2Q53H82 288 aaPredicted RBP17.93■□□□□ 0.46
COL7A1-209ENST00000474432 COLEC12Q5KU26 742 aa17.93■□□□□ 0.46
COL7A1-209ENST00000474432 TCTN3Q6NUS6 607 aa17.93■□□□□ 0.46
COL7A1-209ENST00000474432 C4orf22Q6V702 233 aa17.93■□□□□ 0.46
COL7A1-209ENST00000474432 TRIM58Q8NG06 486 aa17.93■□□□□ 0.46
COL7A1-209ENST00000474432 CLIP3Q96DZ5 547 aa17.93■□□□□ 0.46
COL7A1-209ENST00000474432 TTC1Q99614 292 aa17.93■□□□□ 0.46
COL7A1-209ENST00000474432 KIFC1Q9BW19 673 aa17.93■□□□□ 0.46
COL7A1-209ENST00000474432 IL22Q9GZX6 179 aa17.93■□□□□ 0.46
COL7A1-209ENST00000474432 ACTR5Q9H9F9 607 aaPredicted RBP17.93■□□□□ 0.46
COL7A1-209ENST00000474432 FANCEQ9HB96 536 aa17.93■□□□□ 0.46
COL7A1-209ENST00000474432 ANAPC2Q9UJX6 822 aa17.93■□□□□ 0.46
COL7A1-209ENST00000474432 MAN2B2Q9Y2E5 1009 aa17.93■□□□□ 0.46
COL7A1-209ENST00000474432 PPP2R2CQ9Y2T4 447 aa17.93■□□□□ 0.46
COL7A1-209ENST00000474432 SPENQ96T58 3664 aaKnown RBP17.92■□□□□ 0.46
COL7A1-209ENST00000474432 PRMT5O14744 637 aaPredicted RBP17.92■□□□□ 0.46
COL7A1-209ENST00000474432 ZNF749O43361 778 aa17.92■□□□□ 0.46
COL7A1-209ENST00000474432 RFPL1O75677 317 aa17.92■□□□□ 0.46
COL7A1-209ENST00000474432 KLK3P07288 261 aaPredicted RBP17.92■□□□□ 0.46
COL7A1-209ENST00000474432 TPSB2P20231 275 aa17.92■□□□□ 0.46
COL7A1-209ENST00000474432 MGAT1P26572 445 aa17.92■□□□□ 0.46
COL7A1-209ENST00000474432 PKLRP30613 574 aa17.92■□□□□ 0.46
COL7A1-209ENST00000474432 ITGA1P56199 1179 aa17.92■□□□□ 0.46
COL7A1-209ENST00000474432 TPSAB1Q15661 275 aa17.92■□□□□ 0.46
COL7A1-209ENST00000474432 PTCHD3Q3KNS1 767 aa17.92■□□□□ 0.46
COL7A1-209ENST00000474432 DNAJC21Q5F1R6 531 aaKnown RBP17.92■□□□□ 0.46
COL7A1-209ENST00000474432 CPZQ66K79 652 aa17.92■□□□□ 0.46
COL7A1-209ENST00000474432 TTC27Q6P3X3 843 aa17.92■□□□□ 0.46
COL7A1-209ENST00000474432 CES3Q6UWW8 571 aa17.92■□□□□ 0.46
COL7A1-209ENST00000474432 FAM20CQ8IXL6 584 aa17.92■□□□□ 0.46
Retrieved 100 of 20,778 RNA–protein pairs in 97.4 ms