RNA–Protein interactions for RNA: ENST00000471834.1

SYNE1-220, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 1 (best)

Gene SYNE1, Length 7,229 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-220ENST00000471834 HOXA2O43364 376 aa5.24□□□□□ -1.57
SYNE1-220ENST00000471834 SERPINF2P08697 491 aa5.24□□□□□ -1.57
SYNE1-220ENST00000471834 SESN2P58004 480 aaPredicted RBP5.24□□□□□ -1.57
SYNE1-220ENST00000471834 HSD17B12Q53GQ0 312 aa5.24□□□□□ -1.57
SYNE1-220ENST00000471834 TP53INP2Q8IXH6 220 aa5.24□□□□□ -1.57
SYNE1-220ENST00000471834 TMEM192Q8IY95 271 aa5.24□□□□□ -1.57
SYNE1-220ENST00000471834 L3MBTL4Q8NA19 623 aa5.24□□□□□ -1.57
SYNE1-220ENST00000471834 FAM156AQ8NDB6 213 aa5.24□□□□□ -1.57
SYNE1-220ENST00000471834 BTN2A2Q8WVV5 523 aa5.24□□□□□ -1.57
SYNE1-220ENST00000471834 SMCHD1A6NHR9 2005 aa5.24□□□□□ -1.57
SYNE1-220ENST00000471834 A0A0J9YYE9 177 aa5.24□□□□□ -1.57
SYNE1-220ENST00000471834 TMEM233B4DJY2 109 aa5.24□□□□□ -1.57
SYNE1-220ENST00000471834 TIPRLO75663 272 aa5.24□□□□□ -1.57
SYNE1-220ENST00000471834 PRLP01236 227 aa5.24□□□□□ -1.57
SYNE1-220ENST00000471834 DPEP1P16444 411 aa5.24□□□□□ -1.57
SYNE1-220ENST00000471834 CTPS1P17812 591 aa5.24□□□□□ -1.57
SYNE1-220ENST00000471834 RALGDSQ12967 914 aa5.24□□□□□ -1.57
SYNE1-220ENST00000471834 POLD3Q15054 466 aaPredicted RBP5.24□□□□□ -1.57
SYNE1-220ENST00000471834 CDK10Q15131 360 aa5.24□□□□□ -1.57
SYNE1-220ENST00000471834 ZCCHC8Q6NZY4 707 aaKnown RBP5.24□□□□□ -1.57
SYNE1-220ENST00000471834 METAP1DQ6UB28 335 aaPredicted RBP5.24□□□□□ -1.57
SYNE1-220ENST00000471834 CLEC20AQ6ZU45 233 aa5.24□□□□□ -1.57
SYNE1-220ENST00000471834 ADCK1Q86TW2 530 aa5.24□□□□□ -1.57
SYNE1-220ENST00000471834 P2RY8Q86VZ1 359 aa5.24□□□□□ -1.57
SYNE1-220ENST00000471834 APPL2Q8NEU8 664 aa5.24□□□□□ -1.57
SYNE1-220ENST00000471834 ZFAND1Q8TCF1 268 aa5.24□□□□□ -1.57
SYNE1-220ENST00000471834 ULK4Q96C45 1275 aa5.24□□□□□ -1.57
SYNE1-220ENST00000471834 RBM4BQ9BQ04 359 aaKnown RBP5.24□□□□□ -1.57
SYNE1-220ENST00000471834 RBM4Q9BWF3 364 aaKnown RBP5.24□□□□□ -1.57
SYNE1-220ENST00000471834 PIF1Q9H611 641 aa5.24□□□□□ -1.57
SYNE1-220ENST00000471834 ZNF229Q9UJW7 825 aa5.24□□□□□ -1.57
SYNE1-220ENST00000471834 AKAP8LQ9ULX6 646 aaKnown RBP eCLIP5.24□□□□□ -1.57
SYNE1-220ENST00000471834 RUVBL2Q9Y230 463 aaKnown RBP5.24□□□□□ -1.57
SYNE1-220ENST00000471834 PCDHGA2Q9Y5H1 932 aa5.24□□□□□ -1.57
SYNE1-220ENST00000471834 LACTBL1A8MY62 500 aa5.24□□□□□ -1.57
SYNE1-220ENST00000471834 FAM72CH0Y354 149 aa5.24□□□□□ -1.57
SYNE1-220ENST00000471834 WNT10BO00744 389 aa5.24□□□□□ -1.57
SYNE1-220ENST00000471834 PRRG1O14668 218 aa5.24□□□□□ -1.57
SYNE1-220ENST00000471834 GLUD1P00367 558 aa5.24□□□□□ -1.57
SYNE1-220ENST00000471834 ERVK-10P10266 1014 aa5.24□□□□□ -1.57
SYNE1-220ENST00000471834 SF3B4Q15427 424 aaKnown RBP eCLIP5.24□□□□□ -1.57
SYNE1-220ENST00000471834 FAM72AQ5TYM5 149 aa5.24□□□□□ -1.57
SYNE1-220ENST00000471834 LRRC66Q68CR7 880 aa5.24□□□□□ -1.57
SYNE1-220ENST00000471834 FAM72DQ6L9T8 149 aa5.24□□□□□ -1.57
SYNE1-220ENST00000471834 CBLL1Q75N03 491 aa5.24□□□□□ -1.57
SYNE1-220ENST00000471834 FAM72BQ86X60 149 aa5.24□□□□□ -1.57
SYNE1-220ENST00000471834 RBFAQ8N0V3 343 aa5.24□□□□□ -1.57
SYNE1-220ENST00000471834 PCDH20Q8N6Y1 951 aaKnown RBP5.24□□□□□ -1.57
SYNE1-220ENST00000471834 CD200R1Q8TD46 325 aa5.24□□□□□ -1.57
SYNE1-220ENST00000471834 SGCDQ92629 289 aa5.24□□□□□ -1.57
SYNE1-220ENST00000471834 TMBIM1Q969X1 311 aa5.24□□□□□ -1.57
SYNE1-220ENST00000471834 PTERQ96BW5 349 aa5.24□□□□□ -1.57
SYNE1-220ENST00000471834 KLRG1Q96E93 195 aa5.24□□□□□ -1.57
SYNE1-220ENST00000471834 C19orf60Q96EN9 201 aa5.24□□□□□ -1.57
SYNE1-220ENST00000471834 TRNAU1APQ9NX07 287 aaKnown RBP5.24□□□□□ -1.57
SYNE1-220ENST00000471834 SH3BP4Q9P0V3 963 aa5.24□□□□□ -1.57
SYNE1-220ENST00000471834 STOML2Q9UJZ1 356 aa5.24□□□□□ -1.57
SYNE1-220ENST00000471834 PCDHB11Q9Y5F2 797 aa5.24□□□□□ -1.57
SYNE1-220ENST00000471834 SNX5Q9Y5X3 404 aa5.24□□□□□ -1.57
SYNE1-220ENST00000471834 PCDHGA12O60330 932 aa5.24□□□□□ -1.57
SYNE1-220ENST00000471834 LRIG2O94898 1065 aa5.24□□□□□ -1.57
SYNE1-220ENST00000471834 ENO3P13929 434 aaPredicted RBP5.24□□□□□ -1.57
SYNE1-220ENST00000471834 LIPAP38571 399 aa5.24□□□□□ -1.57
SYNE1-220ENST00000471834 RAD23AP54725 363 aa5.24□□□□□ -1.57
SYNE1-220ENST00000471834 DIO3P55073 304 aa5.24□□□□□ -1.57
SYNE1-220ENST00000471834 PRAMEP78395 509 aa5.24□□□□□ -1.57
SYNE1-220ENST00000471834 DMC1Q14565 340 aa5.24□□□□□ -1.57
SYNE1-220ENST00000471834 FAM83EQ2M2I3 478 aa5.24□□□□□ -1.57
SYNE1-220ENST00000471834 ZNF767PQ75MW2 155 aa5.24□□□□□ -1.57
SYNE1-220ENST00000471834 C8orf59Q8N0T1 100 aaPredicted RBP5.24□□□□□ -1.57
SYNE1-220ENST00000471834 RNF149Q8NC42 400 aa5.24□□□□□ -1.57
SYNE1-220ENST00000471834 PSD4Q8NDX1 1056 aa5.24□□□□□ -1.57
SYNE1-220ENST00000471834 OR4M1Q8NGD0 313 aa5.24□□□□□ -1.57
SYNE1-220ENST00000471834 UTP23Q9BRU9 249 aaKnown RBP5.24□□□□□ -1.57
SYNE1-220ENST00000471834 CLMPQ9H6B4 373 aa5.24□□□□□ -1.57
SYNE1-220ENST00000471834 EMC3Q9P0I2 261 aa5.24□□□□□ -1.57
SYNE1-220ENST00000471834 KCNN3Q9UGI6 736 aa5.24□□□□□ -1.57
SYNE1-220ENST00000471834 LSM7Q9UK45 103 aaKnown RBP5.24□□□□□ -1.57
SYNE1-220ENST00000471834 SF3B6Q9Y3B4 125 aaKnown RBP5.24□□□□□ -1.57
SYNE1-220ENST00000471834 TEX51A0A1B0GUA7 166 aa5.24□□□□□ -1.57
SYNE1-220ENST00000471834 FAM220BPB1ANY3 271 aa5.24□□□□□ -1.57
SYNE1-220ENST00000471834 G3V3Q6 166 aa5.24□□□□□ -1.57
SYNE1-220ENST00000471834 PHGDHO43175 533 aaKnown RBP5.24□□□□□ -1.57
SYNE1-220ENST00000471834 CNMDO75829 334 aa5.24□□□□□ -1.57
SYNE1-220ENST00000471834 MT-ND2P03891 347 aa5.24□□□□□ -1.57
SYNE1-220ENST00000471834 ANXA6P08133 673 aa5.24□□□□□ -1.57
SYNE1-220ENST00000471834 YWHAQP27348 245 aa5.24□□□□□ -1.57
SYNE1-220ENST00000471834 ALDH9A1P49189 494 aa5.24□□□□□ -1.57
SYNE1-220ENST00000471834 YBEYP58557 167 aaPredicted RBP5.24□□□□□ -1.57
SYNE1-220ENST00000471834 RING1Q06587 406 aa5.24□□□□□ -1.57
SYNE1-220ENST00000471834 MAP2K5Q13163 448 aa5.24□□□□□ -1.57
SYNE1-220ENST00000471834 FZD5Q13467 585 aa5.24□□□□□ -1.57
SYNE1-220ENST00000471834 TIGD2Q4W5G0 525 aa5.24□□□□□ -1.57
SYNE1-220ENST00000471834 ZNF789Q5FWF6 425 aa5.24□□□□□ -1.57
SYNE1-220ENST00000471834 RABL3Q5HYI8 236 aa5.24□□□□□ -1.57
SYNE1-220ENST00000471834 CREB3L2Q70SY1 520 aa5.24□□□□□ -1.57
SYNE1-220ENST00000471834 DEFB106AQ8N104 65 aa5.24□□□□□ -1.57
SYNE1-220ENST00000471834 SMOQ99835 787 aa5.24□□□□□ -1.57
SYNE1-220ENST00000471834 C16orf70Q9BSU1 422 aa5.24□□□□□ -1.57
SYNE1-220ENST00000471834 AARSD1Q9BTE6 412 aaKnown RBP5.24□□□□□ -1.57
Retrieved 100 of 20,778 RNA–protein pairs in 41.2 ms