RNA–Protein interactions for RNA: ENST00000469003.5

CCDC28B-204, Transcript of coiled-coil domain containing 28B, humanhuman

TSL 2

Gene CCDC28B, Length 1,235 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28B-204ENST00000469003 FAM198BQ6UWH4 519 aa16.03■□□□□ 0.16
CCDC28B-204ENST00000469003 UNC5AQ6ZN44 842 aa16.03■□□□□ 0.16
CCDC28B-204ENST00000469003 SLC13A5Q86YT5 568 aaPredicted RBP16.03■□□□□ 0.16
CCDC28B-204ENST00000469003 C19orf47Q8N9M1 422 aaKnown RBP16.03■□□□□ 0.16
CCDC28B-204ENST00000469003 OR5K2Q8NHB8 316 aa16.03■□□□□ 0.16
CCDC28B-204ENST00000469003 DPH2Q9BQC3 489 aaPredicted RBP16.03■□□□□ 0.16
CCDC28B-204ENST00000469003 TSGA10Q9BZW7 698 aa16.03■□□□□ 0.16
CCDC28B-204ENST00000469003 SLC7A5P2Q9GIP4 190 aa16.03■□□□□ 0.16
CCDC28B-204ENST00000469003 CHRNA10Q9GZZ6 450 aa16.03■□□□□ 0.16
CCDC28B-204ENST00000469003 ING2Q9H160 280 aa16.03■□□□□ 0.16
CCDC28B-204ENST00000469003 CASS4Q9NQ75 786 aa16.03■□□□□ 0.16
CCDC28B-204ENST00000469003 ACSS2Q9NR19 701 aa16.03■□□□□ 0.16
CCDC28B-204ENST00000469003 SLC2A6Q9UGQ3 507 aa16.03■□□□□ 0.16
CCDC28B-204ENST00000469003 TCFL5Q9UL49 500 aa16.03■□□□□ 0.16
CCDC28B-204ENST00000469003 SNX7Q9UNH6 387 aa16.03■□□□□ 0.16
CCDC28B-204ENST00000469003 ZNF148Q9UQR1 794 aa16.03■□□□□ 0.16
CCDC28B-204ENST00000469003 PCDHGA9Q9Y5G4 932 aaKnown RBP16.03■□□□□ 0.16
CCDC28B-204ENST00000469003 TNRC6AQ8NDV7 1962 aaKnown RBP16.02■□□□□ 0.16
CCDC28B-204ENST00000469003 ARGFXA6NJG6 315 aa16.02■□□□□ 0.16
CCDC28B-204ENST00000469003 ZNF749O43361 778 aa16.02■□□□□ 0.16
CCDC28B-204ENST00000469003 OR1I1O60431 355 aa16.02■□□□□ 0.16
CCDC28B-204ENST00000469003 CHRM5P08912 532 aaPredicted RBP16.02■□□□□ 0.16
CCDC28B-204ENST00000469003 UGT2B7P16662 529 aa16.02■□□□□ 0.16
CCDC28B-204ENST00000469003 GRIA1P42261 906 aa16.02■□□□□ 0.16
CCDC28B-204ENST00000469003 PTGIRP43119 386 aa16.02■□□□□ 0.16
CCDC28B-204ENST00000469003 CHAF1BQ13112 559 aa16.02■□□□□ 0.16
CCDC28B-204ENST00000469003 NAPRTQ6XQN6 538 aa16.02■□□□□ 0.16
CCDC28B-204ENST00000469003 NLRP9Q7RTR0 991 aa16.02■□□□□ 0.16
CCDC28B-204ENST00000469003 GPR135Q8IZ08 494 aa16.02■□□□□ 0.16
CCDC28B-204ENST00000469003 C1orf54Q8WWF1 131 aa16.02■□□□□ 0.16
CCDC28B-204ENST00000469003 PEX13Q92968 403 aa16.02■□□□□ 0.16
CCDC28B-204ENST00000469003 MIB2Q96AX9 1013 aa16.02■□□□□ 0.16
CCDC28B-204ENST00000469003 TCTN2Q96GX1 697 aa16.02■□□□□ 0.16
CCDC28B-204ENST00000469003 SGSM3Q96HU1 749 aa16.02■□□□□ 0.16
CCDC28B-204ENST00000469003 OR2A14Q96R47 310 aa16.02■□□□□ 0.16
CCDC28B-204ENST00000469003 SLC25A23Q9BV35 468 aa16.02■□□□□ 0.16
CCDC28B-204ENST00000469003 RAB6BQ9NRW1 208 aa16.02■□□□□ 0.16
CCDC28B-204ENST00000469003 OR6C2Q9NZP2 312 aa16.02■□□□□ 0.16
CCDC28B-204ENST00000469003 PLAAQ9Y263 795 aa16.02■□□□□ 0.16
CCDC28B-204ENST00000469003 TDRKHQ9Y2W6 561 aaKnown RBP16.02■□□□□ 0.16
CCDC28B-204ENST00000469003 USP9YO00507 2555 aaPredicted RBP16.02■□□□□ 0.15
CCDC28B-204ENST00000469003 KRT86O43790 486 aa16.01■□□□□ 0.15
CCDC28B-204ENST00000469003 KDM1AO60341 852 aa16.01■□□□□ 0.15
CCDC28B-204ENST00000469003 TPBGLP0DKB5 382 aa16.01■□□□□ 0.15
CCDC28B-204ENST00000469003 GP1BBP13224 206 aa16.01■□□□□ 0.15
CCDC28B-204ENST00000469003 ETS1P14921 441 aa16.01■□□□□ 0.15
CCDC28B-204ENST00000469003 AGXTP21549 392 aa16.01■□□□□ 0.15
CCDC28B-204ENST00000469003 PPARGP37231 505 aaPredicted RBP16.01■□□□□ 0.15
CCDC28B-204ENST00000469003 CD97P48960 835 aa16.01■□□□□ 0.15
CCDC28B-204ENST00000469003 CCL11P51671 97 aa16.01■□□□□ 0.15
CCDC28B-204ENST00000469003 PGDP52209 483 aa16.01■□□□□ 0.15
CCDC28B-204ENST00000469003 SNX1Q13596 522 aa16.01■□□□□ 0.15
CCDC28B-204ENST00000469003 UBAP2LQ14157 1087 aaKnown RBP16.01■□□□□ 0.15
CCDC28B-204ENST00000469003 NCF4Q15080 339 aa16.01■□□□□ 0.15
CCDC28B-204ENST00000469003 PTCHD3Q3KNS1 767 aa16.01■□□□□ 0.15
CCDC28B-204ENST00000469003 ZNF385CQ66K41 422 aaPredicted RBP16.01■□□□□ 0.15
CCDC28B-204ENST00000469003 ZNF534Q76KX8 674 aa16.01■□□□□ 0.15
CCDC28B-204ENST00000469003 TRIM73Q86UV7 250 aa16.01■□□□□ 0.15
CCDC28B-204ENST00000469003 OR6P1Q8NGX9 317 aa16.01■□□□□ 0.15
CCDC28B-204ENST00000469003 OR4L1Q8NH43 312 aa16.01■□□□□ 0.15
CCDC28B-204ENST00000469003 FLVCR1-AS1Q8TAF5 88 aa16.01■□□□□ 0.15
CCDC28B-204ENST00000469003 N4BP2L2Q92802 583 aaPredicted RBP16.01■□□□□ 0.15
CCDC28B-204ENST00000469003 ZNF778Q96MU6 729 aa16.01■□□□□ 0.15
CCDC28B-204ENST00000469003 FAM60AQ9NP50 221 aa16.01■□□□□ 0.15
CCDC28B-204ENST00000469003 MLXIPLQ9NP71 852 aa16.01■□□□□ 0.15
CCDC28B-204ENST00000469003 SPHK1Q9NYA1 384 aa16.01■□□□□ 0.15
CCDC28B-204ENST00000469003 PAK5Q9P286 719 aa16.01■□□□□ 0.15
CCDC28B-204ENST00000469003 GUCA1BQ9UMX6 200 aa16.01■□□□□ 0.15
CCDC28B-204ENST00000469003 TCAF1Q9Y4C2 921 aa16.01■□□□□ 0.15
CCDC28B-204ENST00000469003 MED13Q9UHV7 2174 aa16■□□□□ 0.15
CCDC28B-204ENST00000469003 A0A0J9YY10 115 aa16■□□□□ 0.15
CCDC28B-204ENST00000469003 GOLGA6L6A8MZA4 724 aa16■□□□□ 0.15
CCDC28B-204ENST00000469003 C9J4A7 227 aa16■□□□□ 0.15
CCDC28B-204ENST00000469003 H3BMH7 237 aa16■□□□□ 0.15
CCDC28B-204ENST00000469003 TMEM63AO94886 807 aa16■□□□□ 0.15
CCDC28B-204ENST00000469003 GABRA4P48169 554 aa16■□□□□ 0.15
CCDC28B-204ENST00000469003 PRAMEP78395 509 aa16■□□□□ 0.15
CCDC28B-204ENST00000469003 ZIC1Q15915 447 aa16■□□□□ 0.15
CCDC28B-204ENST00000469003 FASTKD1Q53R41 847 aaKnown RBP16■□□□□ 0.15
CCDC28B-204ENST00000469003 DNAJC21Q5F1R6 531 aaKnown RBP16■□□□□ 0.15
CCDC28B-204ENST00000469003 PAPD7Q5XG87 772 aaKnown RBP16■□□□□ 0.15
CCDC28B-204ENST00000469003 PRUNE1Q86TP1 453 aa16■□□□□ 0.15
CCDC28B-204ENST00000469003 SLC22A15Q8IZD6 547 aa16■□□□□ 0.15
CCDC28B-204ENST00000469003 CCDC89Q8N998 374 aa16■□□□□ 0.15
CCDC28B-204ENST00000469003 PPHLN1Q8NEY8 458 aaKnown RBP16■□□□□ 0.15
CCDC28B-204ENST00000469003 DHRS4Q9BTZ2 278 aa16■□□□□ 0.15
CCDC28B-204ENST00000469003 CARD6Q9BX69 1037 aa16■□□□□ 0.15
CCDC28B-204ENST00000469003 TSSK1BQ9BXA7 367 aa16■□□□□ 0.15
CCDC28B-204ENST00000469003 AP1M1Q9BXS5 423 aa16■□□□□ 0.15
CCDC28B-204ENST00000469003 AP1M2Q9Y6Q5 423 aa16■□□□□ 0.15
CCDC28B-204ENST00000469003 SPTBN1Q01082 2364 aaKnown RBP15.99■□□□□ 0.15
CCDC28B-204ENST00000469003 SEC16AO15027 2179 aa15.99■□□□□ 0.15
CCDC28B-204ENST00000469003 CLEC18AA5D8T8 446 aa15.99■□□□□ 0.15
CCDC28B-204ENST00000469003 ISM1B1AKI9 464 aa15.99■□□□□ 0.15
CCDC28B-204ENST00000469003 CEACAM4O75871 244 aa15.99■□□□□ 0.15
CCDC28B-204ENST00000469003 OR2B3O76000 313 aa15.99■□□□□ 0.15
CCDC28B-204ENST00000469003 APRTP07741 180 aa15.99■□□□□ 0.15
CCDC28B-204ENST00000469003 CCR7P32248 378 aa15.99■□□□□ 0.15
CCDC28B-204ENST00000469003 CSE1LP55060 971 aaKnown RBP15.99■□□□□ 0.15
CCDC28B-204ENST00000469003 MLLT10P55197 1068 aa15.99■□□□□ 0.15
Retrieved 100 of 20,778 RNA–protein pairs in 38.8 ms