RNA–Protein interactions for RNA: ENST00000455596.5

HMGB3-205, Transcript of high mobility group box 3, humanhuman

APPRIS ALT2 TSL 1 (best)

Gene HMGB3, Length 793 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB3-205ENST00000455596 P2RY12Q9H244 342 aa20.55■□□□□ 0.88
HMGB3-205ENST00000455596 KCNF1Q9H3M0 494 aa20.55■□□□□ 0.88
HMGB3-205ENST00000455596 GEMIN8Q9NWZ8 242 aaKnown RBP20.55■□□□□ 0.88
HMGB3-205ENST00000455596 OR6C2Q9NZP2 312 aa20.55■□□□□ 0.88
HMGB3-205ENST00000455596 C21orf140B9A014 251 aa20.54■□□□□ 0.88
HMGB3-205ENST00000455596 TMEM150CB9EJG8 249 aa20.54■□□□□ 0.88
HMGB3-205ENST00000455596 KPNA5O15131 536 aa20.54■□□□□ 0.88
HMGB3-205ENST00000455596 PFDN6O15212 129 aa20.54■□□□□ 0.88
HMGB3-205ENST00000455596 KIF5CO60282 957 aa20.54■□□□□ 0.88
HMGB3-205ENST00000455596 AVILO75366 819 aa20.54■□□□□ 0.88
HMGB3-205ENST00000455596 RPN2P04844 631 aa20.54■□□□□ 0.88
HMGB3-205ENST00000455596 CHRM5P08912 532 aaPredicted RBP20.54■□□□□ 0.88
HMGB3-205ENST00000455596 MSL3P1P0C860 447 aa20.54■□□□□ 0.88
HMGB3-205ENST00000455596 TPBGLP0DKB5 382 aa20.54■□□□□ 0.88
HMGB3-205ENST00000455596 PVRP15151 417 aa20.54■□□□□ 0.88
HMGB3-205ENST00000455596 PAMP19021 973 aa20.54■□□□□ 0.88
HMGB3-205ENST00000455596 ARNTP27540 789 aa20.54■□□□□ 0.88
HMGB3-205ENST00000455596 POLE2P56282 527 aa20.54■□□□□ 0.88
HMGB3-205ENST00000455596 NFATC3Q12968 1075 aa20.54■□□□□ 0.88
HMGB3-205ENST00000455596 ANKRD22Q5VYY1 191 aa20.54■□□□□ 0.88
HMGB3-205ENST00000455596 KIAA0930Q6ICG6 404 aaPredicted RBP20.54■□□□□ 0.88
HMGB3-205ENST00000455596 CASC4Q6P4E1 433 aa20.54■□□□□ 0.88
HMGB3-205ENST00000455596 GRK7Q8WTQ7 553 aa20.54■□□□□ 0.88
HMGB3-205ENST00000455596 COG1Q8WTW3 980 aa20.54■□□□□ 0.88
HMGB3-205ENST00000455596 KLHL25Q9H0H3 589 aa20.54■□□□□ 0.88
HMGB3-205ENST00000455596 TRMT1Q9NXH9 659 aaKnown RBP20.54■□□□□ 0.88
HMGB3-205ENST00000455596 SAMD15Q9P1V8 674 aa20.54■□□□□ 0.88
HMGB3-205ENST00000455596 PLAGL1Q9UM63 463 aa20.54■□□□□ 0.88
HMGB3-205ENST00000455596 PCDHGA6Q9Y5G7 932 aa20.54■□□□□ 0.88
HMGB3-205ENST00000455596 SMG1Q96Q15 3661 aaKnown RBP20.54■□□□□ 0.88
HMGB3-205ENST00000455596 GOLGA6L10A0A0M3HER8 536 aa20.53■□□□□ 0.88
HMGB3-205ENST00000455596 CES2O00748 559 aa20.53■□□□□ 0.88
HMGB3-205ENST00000455596 PHF2O75151 1096 aa20.53■□□□□ 0.88
HMGB3-205ENST00000455596 TMEM63AO94886 807 aa20.53■□□□□ 0.88
HMGB3-205ENST00000455596 SLCO2B1O94956 709 aa20.53■□□□□ 0.88
HMGB3-205ENST00000455596 MLNP12872 115 aa20.53■□□□□ 0.88
HMGB3-205ENST00000455596 PLA2G2AP14555 144 aa20.53■□□□□ 0.88
HMGB3-205ENST00000455596 UGT2B7P16662 529 aa20.53■□□□□ 0.88
HMGB3-205ENST00000455596 EIF3BP55884 814 aaKnown RBP20.53■□□□□ 0.88
HMGB3-205ENST00000455596 ABRQ12979 859 aa20.53■□□□□ 0.88
HMGB3-205ENST00000455596 RNF187Q5TA31 235 aaPredicted RBP20.53■□□□□ 0.88
HMGB3-205ENST00000455596 ATP1A1-AS1Q5TC04 95 aa20.53■□□□□ 0.88
HMGB3-205ENST00000455596 UNC5DQ6UXZ4 953 aa20.53■□□□□ 0.88
HMGB3-205ENST00000455596 CAND1Q86VP6 1230 aaKnown RBP20.53■□□□□ 0.88
HMGB3-205ENST00000455596 MCUQ8NE86 351 aa20.53■□□□□ 0.88
HMGB3-205ENST00000455596 CFAP61Q8NHU2 1237 aa20.53■□□□□ 0.88
HMGB3-205ENST00000455596 GSDMBQ8TAX9 411 aa20.53■□□□□ 0.88
HMGB3-205ENST00000455596 OR2A14Q96R47 310 aa20.53■□□□□ 0.88
HMGB3-205ENST00000455596 STARD5Q9NSY2 213 aa20.53■□□□□ 0.88
HMGB3-205ENST00000455596 SERTAD3Q9UJW9 196 aa20.53■□□□□ 0.88
HMGB3-205ENST00000455596 SNX12Q9UMY4 172 aa20.53■□□□□ 0.88
HMGB3-205ENST00000455596 NEU2Q9Y3R4 380 aa20.53■□□□□ 0.88
HMGB3-205ENST00000455596 ISM1B1AKI9 464 aa20.52■□□□□ 0.88
HMGB3-205ENST00000455596 GOLGA8KD6RF30 607 aa20.52■□□□□ 0.88
HMGB3-205ENST00000455596 GOLGA8TH3BQL2 631 aa20.52■□□□□ 0.88
HMGB3-205ENST00000455596 CREG1O75629 220 aa20.52■□□□□ 0.88
HMGB3-205ENST00000455596 KLK3P07288 261 aaPredicted RBP20.52■□□□□ 0.88
HMGB3-205ENST00000455596 OGNP20774 298 aaKnown RBP20.52■□□□□ 0.88
HMGB3-205ENST00000455596 FNTAP49354 379 aa20.52■□□□□ 0.88
HMGB3-205ENST00000455596 ERV3-1Q14264 604 aa20.52■□□□□ 0.88
HMGB3-205ENST00000455596 KYNUQ16719 465 aa20.52■□□□□ 0.88
HMGB3-205ENST00000455596 TYSND1Q2T9J0 566 aa20.52■□□□□ 0.88
HMGB3-205ENST00000455596 DEFB109BQ30KR1 87 aa20.52■□□□□ 0.88
HMGB3-205ENST00000455596 FAM199XQ6PEV8 388 aaPredicted RBP20.52■□□□□ 0.88
HMGB3-205ENST00000455596 OTOAQ7RTW8 1153 aa20.52■□□□□ 0.88
HMGB3-205ENST00000455596 DCUN1D3Q8IWE4 304 aa20.52■□□□□ 0.88
HMGB3-205ENST00000455596 C19orf47Q8N9M1 422 aaKnown RBP20.52■□□□□ 0.88
HMGB3-205ENST00000455596 OR1L3Q8NH93 324 aa20.52■□□□□ 0.88
HMGB3-205ENST00000455596 ANP32BQ92688 251 aaKnown RBP20.52■□□□□ 0.88
HMGB3-205ENST00000455596 CLIP3Q96DZ5 547 aa20.52■□□□□ 0.88
HMGB3-205ENST00000455596 LRFN5Q96NI6 719 aa20.52■□□□□ 0.88
HMGB3-205ENST00000455596 TCF12Q99081 682 aa20.52■□□□□ 0.88
HMGB3-205ENST00000455596 GPR87Q9BY21 358 aa20.52■□□□□ 0.88
HMGB3-205ENST00000455596 FAM117AQ9C073 453 aa20.52■□□□□ 0.88
HMGB3-205ENST00000455596 AKIRIN1Q9H9L7 192 aaPredicted RBP20.52■□□□□ 0.88
HMGB3-205ENST00000455596 XAB2Q9HCS7 855 aaKnown RBP20.52■□□□□ 0.88
HMGB3-205ENST00000455596 SPHK1Q9NYA1 384 aa20.52■□□□□ 0.88
HMGB3-205ENST00000455596 TUBD1Q9UJT1 453 aa20.52■□□□□ 0.88
HMGB3-205ENST00000455596 PCM1Q15154 2024 aa20.51■□□□□ 0.87
HMGB3-205ENST00000455596 A0A0J9YY10 115 aa20.51■□□□□ 0.87
HMGB3-205ENST00000455596 FAM237BA0A1B0GVD1 139 aa20.51■□□□□ 0.87
HMGB3-205ENST00000455596 MAGEB16A2A368 324 aa20.51■□□□□ 0.87
HMGB3-205ENST00000455596 SDR42E2A6NKP2 422 aa20.51■□□□□ 0.87
HMGB3-205ENST00000455596 GOLGA8MH3BSY2 632 aa20.51■□□□□ 0.87
HMGB3-205ENST00000455596 RECKO95980 971 aa20.51■□□□□ 0.87
HMGB3-205ENST00000455596 CYP2A7P20853 494 aa20.51■□□□□ 0.87
HMGB3-205ENST00000455596 PKLRP30613 574 aa20.51■□□□□ 0.87
HMGB3-205ENST00000455596 RAB28P51157 221 aa20.51■□□□□ 0.87
HMGB3-205ENST00000455596 GPS2Q13227 327 aa20.51■□□□□ 0.87
HMGB3-205ENST00000455596 KCNAB2Q13303 367 aa20.51■□□□□ 0.87
HMGB3-205ENST00000455596 KIR2DS3Q14952 304 aa20.51■□□□□ 0.87
HMGB3-205ENST00000455596 CTSL3PQ5NE16 218 aa20.51■□□□□ 0.87
HMGB3-205ENST00000455596 PRAMEF17Q5VTA0 474 aa20.51■□□□□ 0.87
HMGB3-205ENST00000455596 CDHR3Q6ZTQ4 885 aa20.51■□□□□ 0.87
HMGB3-205ENST00000455596 TRIM73Q86UV7 250 aa20.51■□□□□ 0.87
HMGB3-205ENST00000455596 FLVCR1-AS1Q8TAF5 88 aa20.51■□□□□ 0.87
HMGB3-205ENST00000455596 APOBEC4Q8WW27 367 aaKnown RBP20.51■□□□□ 0.87
HMGB3-205ENST00000455596 N4BP2L2Q92802 583 aaPredicted RBP20.51■□□□□ 0.87
HMGB3-205ENST00000455596 MR1Q95460 341 aa20.51■□□□□ 0.87
HMGB3-205ENST00000455596 TCTN2Q96GX1 697 aa20.51■□□□□ 0.87
Retrieved 100 of 20,778 RNA–protein pairs in 23.9 ms