RNA–Protein interactions for RNA: ENST00000447124.1

SDC1-205, Transcript of syndecan 1, humanhuman

TSL 4

Gene SDC1, Length 591 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC1-205ENST00000447124 GABRA4P48169 554 aa20.07■□□□□ 0.8
SDC1-205ENST00000447124 PRAMEP78395 509 aa20.07■□□□□ 0.8
SDC1-205ENST00000447124 PLOD1Q02809 727 aaPredicted RBP20.07■□□□□ 0.8
SDC1-205ENST00000447124 KRT222Q8N1A0 295 aa20.07■□□□□ 0.8
SDC1-205ENST00000447124 LMNTD1Q8N9Z9 388 aa20.07■□□□□ 0.8
SDC1-205ENST00000447124 PPHLN1Q8NEY8 458 aaKnown RBP20.07■□□□□ 0.8
SDC1-205ENST00000447124 OR5K2Q8NHB8 316 aa20.07■□□□□ 0.8
SDC1-205ENST00000447124 TTC1Q99614 292 aa20.07■□□□□ 0.8
SDC1-205ENST00000447124 CARD6Q9BX69 1037 aa20.07■□□□□ 0.8
SDC1-205ENST00000447124 CLMPQ9H6B4 373 aa20.07■□□□□ 0.8
SDC1-205ENST00000447124 SYTL2Q9HCH5 934 aa20.07■□□□□ 0.8
SDC1-205ENST00000447124 EIF2B3Q9NR50 452 aaKnown RBP20.07■□□□□ 0.8
SDC1-205ENST00000447124 TREX1Q9NSU2 369 aa20.07■□□□□ 0.8
SDC1-205ENST00000447124 PCMTD2Q9NV79 361 aa20.07■□□□□ 0.8
SDC1-205ENST00000447124 POLG2Q9UHN1 485 aa20.07■□□□□ 0.8
SDC1-205ENST00000447124 TLK1Q9UKI8 766 aa20.07■□□□□ 0.8
SDC1-205ENST00000447124 TCRBV7S3A2A0A539 114 aa20.06■□□□□ 0.8
SDC1-205ENST00000447124 CEP104O60308 925 aa20.06■□□□□ 0.8
SDC1-205ENST00000447124 KLK3P07288 261 aaPredicted RBP20.06■□□□□ 0.8
SDC1-205ENST00000447124 CTSBP07858 339 aa20.06■□□□□ 0.8
SDC1-205ENST00000447124 NMBRP28336 390 aa20.06■□□□□ 0.8
SDC1-205ENST00000447124 PEBP1P30086 187 aaKnown RBP20.06■□□□□ 0.8
SDC1-205ENST00000447124 SHMT2P34897 504 aa20.06■□□□□ 0.8
SDC1-205ENST00000447124 CSRP3P50461 194 aa20.06■□□□□ 0.8
SDC1-205ENST00000447124 RPS15P62841 145 aaKnown RBP20.06■□□□□ 0.8
SDC1-205ENST00000447124 TLE1Q04724 770 aa20.06■□□□□ 0.8
SDC1-205ENST00000447124 IL10RAQ13651 578 aa20.06■□□□□ 0.8
SDC1-205ENST00000447124 UGT8Q16880 541 aa20.06■□□□□ 0.8
SDC1-205ENST00000447124 COLEC12Q5KU26 742 aa20.06■□□□□ 0.8
SDC1-205ENST00000447124 FAM69BQ5VUD6 431 aa20.06■□□□□ 0.8
SDC1-205ENST00000447124 IZUMO3Q5VZ72 239 aa20.06■□□□□ 0.8
SDC1-205ENST00000447124 SLC22A15Q8IZD6 547 aa20.06■□□□□ 0.8
SDC1-205ENST00000447124 PRELID2Q8N945 189 aa20.06■□□□□ 0.8
SDC1-205ENST00000447124 CPT1BQ92523 772 aa20.06■□□□□ 0.8
SDC1-205ENST00000447124 TRIM55Q9BYV6 548 aa20.06■□□□□ 0.8
SDC1-205ENST00000447124 SERTAD3Q9UJW9 196 aa20.06■□□□□ 0.8
SDC1-205ENST00000447124 TP53TG5Q9Y2B4 290 aa20.06■□□□□ 0.8
SDC1-205ENST00000447124 ZKSCAN5Q9Y2L8 839 aa20.06■□□□□ 0.8
SDC1-205ENST00000447124 H3BMH7 237 aa20.05■□□□□ 0.8
SDC1-205ENST00000447124 CD3EAPO15446 510 aaKnown RBP20.05■□□□□ 0.8
SDC1-205ENST00000447124 DNAJB5O75953 348 aa20.05■□□□□ 0.8
SDC1-205ENST00000447124 NPY2RP49146 381 aa20.05■□□□□ 0.8
SDC1-205ENST00000447124 BASP1P80723 227 aaKnown RBP20.05■□□□□ 0.8
SDC1-205ENST00000447124 HSPA14Q0VDF9 509 aa20.05■□□□□ 0.8
SDC1-205ENST00000447124 GRB7Q14451 532 aa20.05■□□□□ 0.8
SDC1-205ENST00000447124 SYTL3Q4VX76 610 aa20.05■□□□□ 0.8
SDC1-205ENST00000447124 GSTA5Q7RTV2 222 aa20.05■□□□□ 0.8
SDC1-205ENST00000447124 SYVN1Q86TM6 617 aa20.05■□□□□ 0.8
SDC1-205ENST00000447124 APLFQ8IW19 511 aaPredicted RBP20.05■□□□□ 0.8
SDC1-205ENST00000447124 FAM20CQ8IXL6 584 aa20.05■□□□□ 0.8
SDC1-205ENST00000447124 CLIP3Q96DZ5 547 aa20.05■□□□□ 0.8
SDC1-205ENST00000447124 MENTQ9BUN1 341 aa20.05■□□□□ 0.8
SDC1-205ENST00000447124 SPRTNQ9H040 489 aaPredicted RBP20.05■□□□□ 0.8
SDC1-205ENST00000447124 EPN3Q9H201 632 aa20.05■□□□□ 0.8
SDC1-205ENST00000447124 P2RY12Q9H244 342 aa20.05■□□□□ 0.8
SDC1-205ENST00000447124 ACTR5Q9H9F9 607 aaPredicted RBP20.05■□□□□ 0.8
SDC1-205ENST00000447124 FANCEQ9HB96 536 aa20.05■□□□□ 0.8
SDC1-205ENST00000447124 CATSPERZQ9NTU4 200 aa20.05■□□□□ 0.8
SDC1-205ENST00000447124 OR6C2Q9NZP2 312 aa20.05■□□□□ 0.8
SDC1-205ENST00000447124 MGAT1P26572 445 aa20.04■□□□□ 0.8
SDC1-205ENST00000447124 ARNTP27540 789 aa20.04■□□□□ 0.8
SDC1-205ENST00000447124 AOAHP28039 575 aa20.04■□□□□ 0.8
SDC1-205ENST00000447124 PMS2P54278 862 aa20.04■□□□□ 0.8
SDC1-205ENST00000447124 KYNUQ16719 465 aa20.04■□□□□ 0.8
SDC1-205ENST00000447124 PTCHD3Q3KNS1 767 aa20.04■□□□□ 0.8
SDC1-205ENST00000447124 LACTB2Q53H82 288 aaPredicted RBP20.04■□□□□ 0.8
SDC1-205ENST00000447124 DNAJC21Q5F1R6 531 aaKnown RBP20.04■□□□□ 0.8
SDC1-205ENST00000447124 ZNF385CQ66K41 422 aaPredicted RBP20.04■□□□□ 0.8
SDC1-205ENST00000447124 CES3Q6UWW8 571 aa20.04■□□□□ 0.8
SDC1-205ENST00000447124 C4orf22Q6V702 233 aa20.04■□□□□ 0.8
SDC1-205ENST00000447124 C19orf47Q8N9M1 422 aaKnown RBP20.04■□□□□ 0.8
SDC1-205ENST00000447124 TRIM58Q8NG06 486 aa20.04■□□□□ 0.8
SDC1-205ENST00000447124 MAIP1Q8WWC4 291 aa20.04■□□□□ 0.8
SDC1-205ENST00000447124 KIFC1Q9BW19 673 aa20.04■□□□□ 0.8
SDC1-205ENST00000447124 BFARQ9NZS9 450 aa20.04■□□□□ 0.8
SDC1-205ENST00000447124 MAN2B2Q9Y2E5 1009 aa20.04■□□□□ 0.8
SDC1-205ENST00000447124 PPP2R2CQ9Y2T4 447 aa20.04■□□□□ 0.8
SDC1-205ENST00000447124 PRMT5O14744 637 aaPredicted RBP20.03■□□□□ 0.8
SDC1-205ENST00000447124 ZNF749O43361 778 aa20.03■□□□□ 0.8
SDC1-205ENST00000447124 SLCO2B1O94956 709 aa20.03■□□□□ 0.8
SDC1-205ENST00000447124 PDGFAP04085 211 aa20.03■□□□□ 0.8
SDC1-205ENST00000447124 RAB40ALP0C0E4 278 aa20.03■□□□□ 0.8
SDC1-205ENST00000447124 CYP2A7P20853 494 aa20.03■□□□□ 0.8
SDC1-205ENST00000447124 CASRP41180 1078 aa20.03■□□□□ 0.8
SDC1-205ENST00000447124 ITGA1P56199 1179 aa20.03■□□□□ 0.8
SDC1-205ENST00000447124 TRIP13Q15645 432 aaPredicted RBP20.03■□□□□ 0.8
SDC1-205ENST00000447124 TCTN3Q6NUS6 607 aa20.03■□□□□ 0.8
SDC1-205ENST00000447124 LRRC8BQ6P9F7 803 aa20.03■□□□□ 0.8
SDC1-205ENST00000447124 FAM198BQ6UWH4 519 aa20.03■□□□□ 0.8
SDC1-205ENST00000447124 SYTL1Q8IYJ3 562 aa20.03■□□□□ 0.8
SDC1-205ENST00000447124 DNAJC22Q8N4W6 341 aa20.03■□□□□ 0.8
SDC1-205ENST00000447124 ENDOVQ8N8Q3 282 aaKnown RBP20.03■□□□□ 0.8
SDC1-205ENST00000447124 LINC01555Q8NAE3 123 aa20.03■□□□□ 0.8
SDC1-205ENST00000447124 CFAP61Q8NHU2 1237 aa20.03■□□□□ 0.8
SDC1-205ENST00000447124 ADAMTS17Q8TE56 1095 aa20.03■□□□□ 0.8
SDC1-205ENST00000447124 MFSD3Q96ES6 412 aa20.03■□□□□ 0.8
SDC1-205ENST00000447124 TCTN2Q96GX1 697 aa20.03■□□□□ 0.8
SDC1-205ENST00000447124 NLNQ9BYT8 704 aa20.03■□□□□ 0.8
SDC1-205ENST00000447124 IL22Q9GZX6 179 aa20.03■□□□□ 0.8
SDC1-205ENST00000447124 CHRNA10Q9GZZ6 450 aa20.03■□□□□ 0.8
Retrieved 100 of 20,778 RNA–protein pairs in 23.6 ms