RNA–Protein interactions for RNA: ENST00000409945.1

USP40-202, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 2 BASIC

Gene USP40, Length 1,946 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-202ENST00000409945 WDFY4Q6ZS81 3184 aa6.4□□□□□ -1.39
USP40-202ENST00000409945 TBC1D3DA0A087WVF3 549 aa6.39□□□□□ -1.39
USP40-202ENST00000409945 TBC1D3IA0A087WXS9 549 aa6.39□□□□□ -1.39
USP40-202ENST00000409945 TBC1D3EA0A087X179 549 aa6.39□□□□□ -1.39
USP40-202ENST00000409945 TBC1D3KA0A087X1G2 549 aa6.39□□□□□ -1.39
USP40-202ENST00000409945 TBC1D3FA6NER0 549 aaPredicted RBP6.39□□□□□ -1.39
USP40-202ENST00000409945 TBC1D3LB9A6J9 549 aa6.39□□□□□ -1.39
USP40-202ENST00000409945 E5RJQ4 531 aa6.39□□□□□ -1.39
USP40-202ENST00000409945 TULP3O75386 442 aa6.39□□□□□ -1.39
USP40-202ENST00000409945 MOCS3O95396 460 aa6.39□□□□□ -1.39
USP40-202ENST00000409945 ADH4P08319 380 aa6.39□□□□□ -1.39
USP40-202ENST00000409945 TBC1D3HP0C7X1 549 aa6.39□□□□□ -1.39
USP40-202ENST00000409945 CYP11B1P15538 503 aa6.39□□□□□ -1.39
USP40-202ENST00000409945 OPRD1P41143 372 aa6.39□□□□□ -1.39
USP40-202ENST00000409945 ZNF75DP51815 510 aa6.39□□□□□ -1.39
USP40-202ENST00000409945 POLR2FP61218 127 aaKnown RBP6.39□□□□□ -1.39
USP40-202ENST00000409945 ZXDBP98169 803 aa6.39□□□□□ -1.39
USP40-202ENST00000409945 SEC23BQ15437 767 aa6.39□□□□□ -1.39
USP40-202ENST00000409945 DCAF6Q58WW2 860 aa6.39□□□□□ -1.39
USP40-202ENST00000409945 INTS11Q5TA45 600 aaKnown RBP6.39□□□□□ -1.39
USP40-202ENST00000409945 TBC1D3GQ6DHY5 549 aa6.39□□□□□ -1.39
USP40-202ENST00000409945 TBC1D3CQ6IPX1 549 aa6.39□□□□□ -1.39
USP40-202ENST00000409945 DENND1BQ6P3S1 775 aa6.39□□□□□ -1.39
USP40-202ENST00000409945 TSSK4Q6SA08 328 aa6.39□□□□□ -1.39
USP40-202ENST00000409945 Q6ZS52 159 aa6.39□□□□□ -1.39
USP40-202ENST00000409945 WDR5BQ86VZ2 330 aa6.39□□□□□ -1.39
USP40-202ENST00000409945 TMEM25Q86YD3 366 aa6.39□□□□□ -1.39
USP40-202ENST00000409945 TBC1D3Q8IZP1 549 aaPredicted RBP6.39□□□□□ -1.39
USP40-202ENST00000409945 ZBTB44Q8NCP5 570 aa6.39□□□□□ -1.39
USP40-202ENST00000409945 NAXEQ8NCW5 288 aa6.39□□□□□ -1.39
USP40-202ENST00000409945 AZIN2Q96A70 460 aa6.39□□□□□ -1.39
USP40-202ENST00000409945 SDCCAG3Q96C92 435 aa6.39□□□□□ -1.39
USP40-202ENST00000409945 FAR2Q96K12 515 aa6.39□□□□□ -1.39
USP40-202ENST00000409945 PPM1MQ96MI6 270 aa6.39□□□□□ -1.39
USP40-202ENST00000409945 GPR78Q96P69 363 aa6.39□□□□□ -1.39
USP40-202ENST00000409945 GPR63Q9BZJ6 419 aa6.39□□□□□ -1.39
USP40-202ENST00000409945 SNX15Q9NRS6 342 aa6.39□□□□□ -1.39
USP40-202ENST00000409945 SEPT11Q9NVA2 429 aaKnown RBP6.39□□□□□ -1.39
USP40-202ENST00000409945 SEMA5BQ9P283 1151 aa6.39□□□□□ -1.39
USP40-202ENST00000409945 AGO1Q9UL18 857 aaKnown RBP6.39□□□□□ -1.39
USP40-202ENST00000409945 MMP17Q9ULZ9 603 aa6.39□□□□□ -1.39
USP40-202ENST00000409945 PRR23AA6NEV1 266 aa6.38□□□□□ -1.39
USP40-202ENST00000409945 PRRT4C9JH25 899 aa6.38□□□□□ -1.39
USP40-202ENST00000409945 F8VZ95 297 aa6.38□□□□□ -1.39
USP40-202ENST00000409945 KLK10O43240 276 aa6.38□□□□□ -1.39
USP40-202ENST00000409945 AP5Z1O43299 807 aa6.38□□□□□ -1.39
USP40-202ENST00000409945 SYNCRIPO60506 623 aaKnown RBP6.38□□□□□ -1.39
USP40-202ENST00000409945 RHOBTB1O94844 696 aa6.38□□□□□ -1.39
USP40-202ENST00000409945 KLF8O95600 359 aaPredicted RBP6.38□□□□□ -1.39
USP40-202ENST00000409945 F9P00740 461 aa6.38□□□□□ -1.39
USP40-202ENST00000409945 ATP5BP06576 529 aaKnown RBP6.38□□□□□ -1.39
USP40-202ENST00000409945 HNRNPCP07910 306 aaKnown RBP eCLIP6.38□□□□□ -1.39
USP40-202ENST00000409945 DLDP09622 509 aaKnown RBP6.38□□□□□ -1.39
USP40-202ENST00000409945 C6P13671 934 aa6.38□□□□□ -1.39
USP40-202ENST00000409945 CCR1P32246 355 aa6.38□□□□□ -1.39
USP40-202ENST00000409945 RPL34P49207 117 aaKnown RBP6.38□□□□□ -1.39
USP40-202ENST00000409945 SLC37A1P57057 533 aa6.38□□□□□ -1.39
USP40-202ENST00000409945 BLOC1S1P78537 153 aa6.38□□□□□ -1.39
USP40-202ENST00000409945 B4GALNT1Q00973 533 aa6.38□□□□□ -1.39
USP40-202ENST00000409945 CFHR3Q02985 330 aa6.38□□□□□ -1.39
USP40-202ENST00000409945 KLF10Q13118 480 aa6.38□□□□□ -1.39
USP40-202ENST00000409945 AARS2Q5JTZ9 985 aaKnown RBP6.38□□□□□ -1.39
USP40-202ENST00000409945 RABGAP1LQ5R372 815 aa6.38□□□□□ -1.39
USP40-202ENST00000409945 ATG16L1Q676U5 607 aa6.38□□□□□ -1.39
USP40-202ENST00000409945 SLC47A2Q86VL8 602 aa6.38□□□□□ -1.39
USP40-202ENST00000409945 LDLRAD3Q86YD5 345 aa6.38□□□□□ -1.39
USP40-202ENST00000409945 SFTPA1Q8IWL2 248 aa6.38□□□□□ -1.39
USP40-202ENST00000409945 EXD3Q8N9H8 876 aa6.38□□□□□ -1.39
USP40-202ENST00000409945 HJURPQ8NCD3 748 aaPredicted RBP6.38□□□□□ -1.39
USP40-202ENST00000409945 ZNF397Q8NF99 534 aaPredicted RBP6.38□□□□□ -1.39
USP40-202ENST00000409945 WFIKKN2Q8TEU8 576 aa6.38□□□□□ -1.39
USP40-202ENST00000409945 BTN2A3PQ96KV6 586 aa6.38□□□□□ -1.39
USP40-202ENST00000409945 ERGIC2Q96RQ1 377 aa6.38□□□□□ -1.39
USP40-202ENST00000409945 MLXIPLQ9NP71 852 aa6.38□□□□□ -1.39
USP40-202ENST00000409945 SIX2Q9NPC8 291 aa6.38□□□□□ -1.39
USP40-202ENST00000409945 WASH6PQ9NQA3 447 aa6.38□□□□□ -1.39
USP40-202ENST00000409945 RASSF1Q9NS23 344 aa6.38□□□□□ -1.39
USP40-202ENST00000409945 PLA2G4CQ9UP65 541 aa6.38□□□□□ -1.39
USP40-202ENST00000409945 CACNA1IQ9P0X4 2223 aa6.38□□□□□ -1.39
USP40-202ENST00000409945 SHISA7A6NL88 538 aa6.38□□□□□ -1.39
USP40-202ENST00000409945 F5H5T6 163 aa6.38□□□□□ -1.39
USP40-202ENST00000409945 ACSL4O60488 711 aa6.38□□□□□ -1.39
USP40-202ENST00000409945 GFPT2O94808 682 aa6.38□□□□□ -1.39
USP40-202ENST00000409945 TRUB2O95900 331 aaKnown RBP6.38□□□□□ -1.39
USP40-202ENST00000409945 HOXB2P14652 356 aa6.38□□□□□ -1.39
USP40-202ENST00000409945 FERP16591 822 aa6.38□□□□□ -1.39
USP40-202ENST00000409945 NNMTP40261 264 aa6.38□□□□□ -1.39
USP40-202ENST00000409945 DPP6P42658 865 aa6.38□□□□□ -1.39
USP40-202ENST00000409945 NSFP46459 744 aaKnown RBP6.38□□□□□ -1.39
USP40-202ENST00000409945 PGFP49763 221 aa6.38□□□□□ -1.39
USP40-202ENST00000409945 ST8SIA6P61647 398 aa6.38□□□□□ -1.39
USP40-202ENST00000409945 CDH18Q13634 790 aa6.38□□□□□ -1.39
USP40-202ENST00000409945 MPP7Q5T2T1 576 aa6.38□□□□□ -1.39
USP40-202ENST00000409945 TAF3Q5VWG9 929 aa6.38□□□□□ -1.39
USP40-202ENST00000409945 BBS12Q6ZW61 710 aa6.38□□□□□ -1.39
USP40-202ENST00000409945 RNF144BQ7Z419 303 aa6.38□□□□□ -1.39
USP40-202ENST00000409945 VPS36Q86VN1 386 aa6.38□□□□□ -1.39
USP40-202ENST00000409945 DHX40Q8IX18 779 aaKnown RBP6.38□□□□□ -1.39
USP40-202ENST00000409945 MAML2Q8IZL2 1156 aaPredicted RBP6.38□□□□□ -1.39
USP40-202ENST00000409945 ALLCQ8N6M5 410 aa6.38□□□□□ -1.39
Retrieved 100 of 20,778 RNA–protein pairs in 20.8 ms