RNA–Protein interactions for RNA: ENST00000394243.5

SYNPO-202, Transcript of synaptopodin, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene SYNPO, Length 7,063 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNPO-202ENST00000394243 GCATO75600 419 aa11.65□□□□□ -0.54
SYNPO-202ENST00000394243 TLR1Q15399 786 aa11.65□□□□□ -0.54
SYNPO-202ENST00000394243 TOR1AIP2Q8NFQ8 470 aa11.65□□□□□ -0.54
SYNPO-202ENST00000394243 FCRL2Q96LA5 508 aaPredicted RBP11.65□□□□□ -0.54
SYNPO-202ENST00000394243 IFT27Q9BW83 186 aa11.65□□□□□ -0.54
SYNPO-202ENST00000394243 MIOSQ9NXC5 875 aa11.65□□□□□ -0.54
SYNPO-202ENST00000394243 KCTD5Q9NXV2 234 aa11.65□□□□□ -0.54
SYNPO-202ENST00000394243 TAS2R9Q9NYW1 312 aa11.65□□□□□ -0.54
SYNPO-202ENST00000394243 MED31Q9Y3C7 131 aa11.65□□□□□ -0.54
SYNPO-202ENST00000394243 TLR4O00206 839 aa11.65□□□□□ -0.54
SYNPO-202ENST00000394243 VNN2O95498 520 aa11.65□□□□□ -0.54
SYNPO-202ENST00000394243 GBX2P52951 348 aaPredicted RBP11.65□□□□□ -0.54
SYNPO-202ENST00000394243 EEFSECP57772 596 aaKnown RBP11.65□□□□□ -0.54
SYNPO-202ENST00000394243 VLDLRP98155 873 aa11.65□□□□□ -0.54
SYNPO-202ENST00000394243 PTP4A2Q12974 167 aa11.65□□□□□ -0.54
SYNPO-202ENST00000394243 DSC3Q14574 896 aa11.65□□□□□ -0.54
SYNPO-202ENST00000394243 ABCA11PQ4W5N1 156 aa11.65□□□□□ -0.54
SYNPO-202ENST00000394243 ZBTB2Q8N680 514 aa11.65□□□□□ -0.54
SYNPO-202ENST00000394243 PDGFDQ9GZP0 370 aaPredicted RBP11.65□□□□□ -0.54
SYNPO-202ENST00000394243 ZNF395Q9H8N7 513 aaPredicted RBP11.65□□□□□ -0.54
SYNPO-202ENST00000394243 C14orf119Q9NWQ9 140 aa11.65□□□□□ -0.54
SYNPO-202ENST00000394243 MYO10Q9HD67 2058 aa11.65□□□□□ -0.55
SYNPO-202ENST00000394243 CDC42BPAQ5VT25 1732 aa11.65□□□□□ -0.55
SYNPO-202ENST00000394243 A0A0J9YVX5 310 aa11.65□□□□□ -0.55
SYNPO-202ENST00000394243 INMT-MINDY4F8WBC2 141 aa11.65□□□□□ -0.55
SYNPO-202ENST00000394243 CRYZL1O95825 349 aa11.65□□□□□ -0.55
SYNPO-202ENST00000394243 FCER2P06734 321 aa11.65□□□□□ -0.55
SYNPO-202ENST00000394243 AOC1P19801 751 aa11.65□□□□□ -0.55
SYNPO-202ENST00000394243 TUBG1P23258 451 aa11.65□□□□□ -0.55
SYNPO-202ENST00000394243 MAPK8P45983 427 aa11.65□□□□□ -0.55
SYNPO-202ENST00000394243 JAM2P57087 298 aa11.65□□□□□ -0.55
SYNPO-202ENST00000394243 RAB5BP61020 215 aa11.65□□□□□ -0.55
SYNPO-202ENST00000394243 CLEC12AQ5QGZ9 265 aa11.65□□□□□ -0.55
SYNPO-202ENST00000394243 MCCC1Q96RQ3 725 aaPredicted RBP11.65□□□□□ -0.55
SYNPO-202ENST00000394243 USP29Q9HBJ7 922 aa11.65□□□□□ -0.55
SYNPO-202ENST00000394243 TULP4Q9NRJ4 1543 aa11.64□□□□□ -0.55
SYNPO-202ENST00000394243 CENPBD1B2RD01 187 aa11.64□□□□□ -0.55
SYNPO-202ENST00000394243 TFPIP10646 304 aa11.64□□□□□ -0.55
SYNPO-202ENST00000394243 TMBIM6P55061 237 aa11.64□□□□□ -0.55
SYNPO-202ENST00000394243 CRB2Q5IJ48 1285 aa11.64□□□□□ -0.55
SYNPO-202ENST00000394243 STRADAQ7RTN6 431 aa11.64□□□□□ -0.55
SYNPO-202ENST00000394243 HSPA12BQ96MM6 686 aa11.64□□□□□ -0.55
SYNPO-202ENST00000394243 C1QTNF7Q9BXJ2 289 aa11.64□□□□□ -0.55
SYNPO-202ENST00000394243 MMP27Q9H306 513 aa11.64□□□□□ -0.55
SYNPO-202ENST00000394243 SACM1LQ9NTJ5 587 aa11.64□□□□□ -0.55
SYNPO-202ENST00000394243 ZNF358Q9NW07 568 aa11.64□□□□□ -0.55
SYNPO-202ENST00000394243 FBXL3Q9UKT7 428 aa11.64□□□□□ -0.55
SYNPO-202ENST00000394243 TCAF1Q9Y4C2 921 aa11.64□□□□□ -0.55
SYNPO-202ENST00000394243 HES2Q9Y543 173 aa11.64□□□□□ -0.55
SYNPO-202ENST00000394243 PCDHGB3Q9Y5G1 929 aa11.64□□□□□ -0.55
SYNPO-202ENST00000394243 NEXMIFQ5QGS0 1516 aa11.64□□□□□ -0.55
SYNPO-202ENST00000394243 DLGAP1O14490 977 aa11.64□□□□□ -0.55
SYNPO-202ENST00000394243 PAGE1O75459 146 aa11.64□□□□□ -0.55
SYNPO-202ENST00000394243 OXSR1O95747 527 aaPredicted RBP11.64□□□□□ -0.55
SYNPO-202ENST00000394243 CETPP11597 493 aa11.64□□□□□ -0.55
SYNPO-202ENST00000394243 KCNA5P22460 613 aa11.64□□□□□ -0.55
SYNPO-202ENST00000394243 VAMP1P23763 118 aa11.64□□□□□ -0.55
SYNPO-202ENST00000394243 GADD45AP24522 165 aa11.64□□□□□ -0.55
SYNPO-202ENST00000394243 RYKP34925 604 aa11.64□□□□□ -0.55
SYNPO-202ENST00000394243 MMP14P50281 582 aa11.64□□□□□ -0.55
SYNPO-202ENST00000394243 GDF10P55107 478 aa11.64□□□□□ -0.55
SYNPO-202ENST00000394243 C17orf64Q86WR6 236 aa11.64□□□□□ -0.55
SYNPO-202ENST00000394243 TMC8Q8IU68 726 aa11.64□□□□□ -0.55
SYNPO-202ENST00000394243 ESAMQ96AP7 390 aa11.64□□□□□ -0.55
SYNPO-202ENST00000394243 DPCDQ9BVM2 203 aaPredicted RBP11.64□□□□□ -0.55
SYNPO-202ENST00000394243 ENAMQ9NRM1 1142 aa11.64□□□□□ -0.55
SYNPO-202ENST00000394243 POLLQ9UGP5 575 aa11.64□□□□□ -0.55
SYNPO-202ENST00000394243 CYP3A7-CYP3A51PA0A087WV96 503 aa11.64□□□□□ -0.55
SYNPO-202ENST00000394243 A0A1W2PRQ8 180 aa11.64□□□□□ -0.55
SYNPO-202ENST00000394243 BTBD19C9JJ37 291 aa11.64□□□□□ -0.55
SYNPO-202ENST00000394243 HTRA2O43464 458 aaPredicted RBP11.64□□□□□ -0.55
SYNPO-202ENST00000394243 CYP3A7P24462 503 aa11.64□□□□□ -0.55
SYNPO-202ENST00000394243 RPIAP49247 311 aa11.64□□□□□ -0.55
SYNPO-202ENST00000394243 ATXN7L3Q14CW9 347 aaPredicted RBP11.64□□□□□ -0.55
SYNPO-202ENST00000394243 ARL9Q6T311 187 aa11.64□□□□□ -0.55
SYNPO-202ENST00000394243 BRINP3Q76B58 766 aa11.64□□□□□ -0.55
SYNPO-202ENST00000394243 DGLUCYQ7Z3D6 616 aa11.64□□□□□ -0.55
SYNPO-202ENST00000394243 LGI4Q8N135 537 aa11.64□□□□□ -0.55
SYNPO-202ENST00000394243 GLB1L3Q8NCI6 653 aaPredicted RBP11.64□□□□□ -0.55
SYNPO-202ENST00000394243 ZMIZ2Q8NF64 920 aa11.64□□□□□ -0.55
SYNPO-202ENST00000394243 OR6K2Q8NGY2 324 aa11.64□□□□□ -0.55
SYNPO-202ENST00000394243 SPATA22Q8NHS9 363 aa11.64□□□□□ -0.55
SYNPO-202ENST00000394243 MIPEPQ99797 713 aa11.64□□□□□ -0.55
SYNPO-202ENST00000394243 PREX2Q70Z35 1606 aa11.64□□□□□ -0.55
SYNPO-202ENST00000394243 PRPS2P11908 318 aa11.64□□□□□ -0.55
SYNPO-202ENST00000394243 GMPSP49915 693 aaPredicted RBP11.64□□□□□ -0.55
SYNPO-202ENST00000394243 RPS14P62263 151 aaKnown RBP11.64□□□□□ -0.55
SYNPO-202ENST00000394243 SLC3A1Q07837 685 aa11.64□□□□□ -0.55
SYNPO-202ENST00000394243 ZMYND11Q15326 602 aa11.64□□□□□ -0.55
SYNPO-202ENST00000394243 GET4Q7L5D6 327 aaPredicted RBP11.64□□□□□ -0.55
SYNPO-202ENST00000394243 ERMP1Q7Z2K6 904 aa11.64□□□□□ -0.55
SYNPO-202ENST00000394243 KIAA0319LQ8IZA0 1049 aa11.64□□□□□ -0.55
SYNPO-202ENST00000394243 POGLUT1Q8NBL1 392 aa11.64□□□□□ -0.55
SYNPO-202ENST00000394243 CERKQ8TCT0 537 aa11.64□□□□□ -0.55
SYNPO-202ENST00000394243 STYXQ8WUJ0 223 aa11.64□□□□□ -0.55
SYNPO-202ENST00000394243 RPF2Q9H7B2 306 aaKnown RBP11.64□□□□□ -0.55
SYNPO-202ENST00000394243 NANSQ9NR45 359 aa11.64□□□□□ -0.55
SYNPO-202ENST00000394243 C2orf92A0A1B0GVN3 265 aa11.64□□□□□ -0.55
SYNPO-202ENST00000394243 ZBTB7AO95365 584 aa11.64□□□□□ -0.55
SYNPO-202ENST00000394243 TUBB3Q13509 450 aa11.64□□□□□ -0.55
Retrieved 100 of 20,778 RNA–protein pairs in 68.8 ms