RNA–Protein interactions for RNA: ENST00000357409.9

VPS13A-202, Transcript of vacuolar protein sorting 13 homolog A, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene VPS13A, Length 9,967 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13A-202ENST00000357409 CLP1Q92989 425 aaKnown RBP7.22□□□□□ -1.25
VPS13A-202ENST00000357409 CCDC177Q9NQR7 707 aaPredicted RBP7.22□□□□□ -1.25
VPS13A-202ENST00000357409 INSL6Q9Y581 213 aa7.22□□□□□ -1.25
VPS13A-202ENST00000357409 K7ERQ8 282 aa7.22□□□□□ -1.25
VPS13A-202ENST00000357409 ITM2AO43736 263 aa7.22□□□□□ -1.25
VPS13A-202ENST00000357409 DNAJA2O60884 412 aa7.22□□□□□ -1.25
VPS13A-202ENST00000357409 MLYCDO95822 493 aa7.22□□□□□ -1.25
VPS13A-202ENST00000357409 DYNC1I2Q13409 638 aaKnown RBP7.22□□□□□ -1.25
VPS13A-202ENST00000357409 PRKD1Q15139 912 aaPredicted RBP7.22□□□□□ -1.25
VPS13A-202ENST00000357409 THAP5Q7Z6K1 395 aa7.22□□□□□ -1.25
VPS13A-202ENST00000357409 KCNA7Q96RP8 456 aa7.22□□□□□ -1.25
VPS13A-202ENST00000357409 COMMD3-BMI1R4GMX3 469 aa7.22□□□□□ -1.25
VPS13A-202ENST00000357409 ABCC3O15438 1527 aa7.22□□□□□ -1.25
VPS13A-202ENST00000357409 TCRBV9S1A1TA0A576 114 aa7.22□□□□□ -1.25
VPS13A-202ENST00000357409 OR6C74A6NCV1 312 aa7.22□□□□□ -1.25
VPS13A-202ENST00000357409 DHX15O43143 795 aaKnown RBP7.22□□□□□ -1.25
VPS13A-202ENST00000357409 IPO13O94829 963 aaKnown RBP7.22□□□□□ -1.25
VPS13A-202ENST00000357409 SEMA3DO95025 777 aa7.22□□□□□ -1.25
VPS13A-202ENST00000357409 CA3P07451 260 aa7.22□□□□□ -1.25
VPS13A-202ENST00000357409 ARFRP1Q13795 201 aa7.22□□□□□ -1.25
VPS13A-202ENST00000357409 SCGB2B2Q4G0G5 96 aa7.22□□□□□ -1.25
VPS13A-202ENST00000357409 TMEM225Q6GV28 225 aa7.22□□□□□ -1.25
VPS13A-202ENST00000357409 IRF2BP2Q7Z5L9 587 aa7.22□□□□□ -1.25
VPS13A-202ENST00000357409 OR1F2PQ96R84 312 aa7.22□□□□□ -1.25
VPS13A-202ENST00000357409 RACGAP1Q9H0H5 632 aa7.22□□□□□ -1.25
VPS13A-202ENST00000357409 LMAN1LQ9HAT1 526 aa7.22□□□□□ -1.25
VPS13A-202ENST00000357409 COMMD3Q9UBI1 195 aa7.22□□□□□ -1.25
VPS13A-202ENST00000357409 REV1Q9UBZ9 1251 aa7.22□□□□□ -1.25
VPS13A-202ENST00000357409 CORO1CQ9ULV4 474 aaPredicted RBP7.22□□□□□ -1.25
VPS13A-202ENST00000357409 RAD1O60671 282 aa7.22□□□□□ -1.25
VPS13A-202ENST00000357409 CSF2P04141 144 aa7.22□□□□□ -1.25
VPS13A-202ENST00000357409 CLCN5P51795 746 aa7.22□□□□□ -1.25
VPS13A-202ENST00000357409 DAOAP59103 153 aa7.22□□□□□ -1.25
VPS13A-202ENST00000357409 ZNF267Q14586 743 aaPredicted RBP7.22□□□□□ -1.25
VPS13A-202ENST00000357409 UNC93AQ86WB7 457 aa7.22□□□□□ -1.25
VPS13A-202ENST00000357409 PLA2G15Q8NCC3 412 aa7.22□□□□□ -1.25
VPS13A-202ENST00000357409 MICU1Q9BPX6 476 aa7.22□□□□□ -1.25
VPS13A-202ENST00000357409 SSR3Q9UNL2 185 aa7.22□□□□□ -1.25
VPS13A-202ENST00000357409 A0A1W2PQ45 241 aaPredicted RBP7.22□□□□□ -1.25
VPS13A-202ENST00000357409 A0A1W2PQY0 241 aa7.22□□□□□ -1.25
VPS13A-202ENST00000357409 OR6C75A6NL08 312 aa7.22□□□□□ -1.25
VPS13A-202ENST00000357409 MID1O15344 667 aa7.22□□□□□ -1.25
VPS13A-202ENST00000357409 ERI3O43414 337 aaKnown RBP7.22□□□□□ -1.25
VPS13A-202ENST00000357409 CLDN11O75508 207 aa7.22□□□□□ -1.25
VPS13A-202ENST00000357409 MTHFD1P11586 935 aaKnown RBP7.22□□□□□ -1.25
VPS13A-202ENST00000357409 DNAJA1P31689 397 aaKnown RBP7.22□□□□□ -1.25
VPS13A-202ENST00000357409 KLHL26Q53HC5 615 aa7.22□□□□□ -1.25
VPS13A-202ENST00000357409 RALGPS1Q5JS13 557 aa7.22□□□□□ -1.25
VPS13A-202ENST00000357409 HCAR2Q8TDS4 363 aa7.22□□□□□ -1.25
VPS13A-202ENST00000357409 RAB8BQ92930 207 aa7.22□□□□□ -1.25
VPS13A-202ENST00000357409 EBNA1BP2Q99848 306 aaKnown RBP7.22□□□□□ -1.25
VPS13A-202ENST00000357409 NXF5Q9H1B4 397 aaKnown RBP7.22□□□□□ -1.25
VPS13A-202ENST00000357409 FARSAQ9Y285 508 aaKnown RBP7.22□□□□□ -1.25
VPS13A-202ENST00000357409 MRPS17Q9Y2R5 130 aaKnown RBP7.22□□□□□ -1.25
VPS13A-202ENST00000357409 YIPF1Q9Y548 306 aa7.22□□□□□ -1.25
VPS13A-202ENST00000357409 RAB27BO00194 218 aa7.22□□□□□ -1.25
VPS13A-202ENST00000357409 LEFTY2O00292 366 aa7.22□□□□□ -1.25
VPS13A-202ENST00000357409 FGF10O15520 208 aaPredicted RBP7.22□□□□□ -1.25
VPS13A-202ENST00000357409 GADD45GO95257 159 aa7.22□□□□□ -1.25
VPS13A-202ENST00000357409 SLC9A3P48764 834 aa7.22□□□□□ -1.25
VPS13A-202ENST00000357409 FCRLBQ6BAA4 426 aa7.22□□□□□ -1.25
VPS13A-202ENST00000357409 TRIB2Q92519 343 aa7.22□□□□□ -1.25
VPS13A-202ENST00000357409 COL21A1Q96P44 957 aa7.22□□□□□ -1.25
VPS13A-202ENST00000357409 CHCHD6Q9BRQ6 235 aa7.22□□□□□ -1.25
VPS13A-202ENST00000357409 FOXQ1Q9C009 403 aa7.22□□□□□ -1.25
VPS13A-202ENST00000357409 MRGBPQ9NV56 204 aa7.22□□□□□ -1.25
VPS13A-202ENST00000357409 HRASLS2Q9NWW9 162 aa7.22□□□□□ -1.25
VPS13A-202ENST00000357409 HEPACAM2A8MVW5 462 aa7.22□□□□□ -1.25
VPS13A-202ENST00000357409 H3BNC9 293 aa7.22□□□□□ -1.25
VPS13A-202ENST00000357409 SOX2P48431 317 aa7.22□□□□□ -1.25
VPS13A-202ENST00000357409 SGCAQ16586 387 aa7.22□□□□□ -1.25
VPS13A-202ENST00000357409 IDNKQ5T6J7 187 aa7.22□□□□□ -1.25
VPS13A-202ENST00000357409 MBOAT1Q6ZNC8 495 aa7.22□□□□□ -1.25
VPS13A-202ENST00000357409 RBM44Q6ZP01 1051 aaKnown RBP7.22□□□□□ -1.25
VPS13A-202ENST00000357409 Q6ZVL8 140 aa7.22□□□□□ -1.25
VPS13A-202ENST00000357409 MKL1Q969V6 931 aa7.22□□□□□ -1.25
VPS13A-202ENST00000357409 SUV39H2Q9H5I1 410 aa7.22□□□□□ -1.25
VPS13A-202ENST00000357409 MRPL15Q9P015 296 aaKnown RBP7.22□□□□□ -1.25
VPS13A-202ENST00000357409 RIC1Q4ADV7 1423 aa7.22□□□□□ -1.25
VPS13A-202ENST00000357409 TTC37Q6PGP7 1564 aa7.22□□□□□ -1.25
VPS13A-202ENST00000357409 PXDNQ92626 1479 aa7.22□□□□□ -1.25
VPS13A-202ENST00000357409 KRBA1A5PL33 1030 aa7.22□□□□□ -1.25
VPS13A-202ENST00000357409 RPS13P62277 151 aaKnown RBP7.22□□□□□ -1.25
VPS13A-202ENST00000357409 SLBPQ14493 270 aaKnown RBP eCLIP7.22□□□□□ -1.25
VPS13A-202ENST00000357409 LIPMQ5VYY2 423 aa7.22□□□□□ -1.25
VPS13A-202ENST00000357409 ZNF101Q8IZC7 436 aa7.22□□□□□ -1.25
VPS13A-202ENST00000357409 SGCDQ92629 289 aa7.22□□□□□ -1.25
VPS13A-202ENST00000357409 TRIM43Q96BQ3 446 aaPredicted RBP7.22□□□□□ -1.25
VPS13A-202ENST00000357409 DMRTB1Q96MA1 342 aa7.22□□□□□ -1.25
VPS13A-202ENST00000357409 ANKRD27Q96NW4 1050 aa7.22□□□□□ -1.25
VPS13A-202ENST00000357409 SLC6A17Q9H1V8 727 aa7.22□□□□□ -1.25
VPS13A-202ENST00000357409 LINC00597Q9H2U6 94 aa7.22□□□□□ -1.25
VPS13A-202ENST00000357409 DCLRE1BQ9H816 532 aa7.22□□□□□ -1.25
VPS13A-202ENST00000357409 FBRSL1Q9HCM7 1045 aaKnown RBP7.22□□□□□ -1.25
VPS13A-202ENST00000357409 SLC22A3O75751 556 aa7.21□□□□□ -1.25
VPS13A-202ENST00000357409 POP4O95707 220 aaKnown RBP7.21□□□□□ -1.25
VPS13A-202ENST00000357409 PRNPP04156 253 aa7.21□□□□□ -1.25
VPS13A-202ENST00000357409 PUDPQ08623 228 aa7.21□□□□□ -1.25
VPS13A-202ENST00000357409 TMED9Q9BVK6 235 aa7.21□□□□□ -1.25
VPS13A-202ENST00000357409 ERGIC3Q9Y282 383 aa7.21□□□□□ -1.25
Retrieved 100 of 20,778 RNA–protein pairs in 20.1 ms