RNA–Protein interactions for RNA: ENST00000308508.5

CSPG4-201, Transcript of chondroitin sulfate proteoglycan 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CSPG4, Length 8,290 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSPG4-201ENST00000308508 TLCD1Q96CP7 247 aa13.64□□□□□ -0.23
CSPG4-201ENST00000308508 KCNN3Q9UGI6 736 aa13.64□□□□□ -0.23
CSPG4-201ENST00000308508 LOC100509620A0A075B734 347 aa13.64□□□□□ -0.23
CSPG4-201ENST00000308508 ILF3Q12906 894 aaKnown RBP eCLIP13.64□□□□□ -0.23
CSPG4-201ENST00000308508 ACSBG2Q5FVE4 666 aa13.64□□□□□ -0.23
CSPG4-201ENST00000308508 SYNPOQ8N3V7 929 aa13.64□□□□□ -0.23
CSPG4-201ENST00000308508 ZMIZ2Q8NF64 920 aa13.64□□□□□ -0.23
CSPG4-201ENST00000308508 NCSTNQ92542 709 aa13.64□□□□□ -0.23
CSPG4-201ENST00000308508 HDAC2Q92769 488 aaKnown RBP13.64□□□□□ -0.23
CSPG4-201ENST00000308508 CDT1Q9H211 546 aa13.64□□□□□ -0.23
CSPG4-201ENST00000308508 LRRC42Q9Y546 428 aa13.64□□□□□ -0.23
CSPG4-201ENST00000308508 IQSEC2Q5JU85 1478 aa13.64□□□□□ -0.23
CSPG4-201ENST00000308508 RPS2P15880 293 aaKnown RBP13.64□□□□□ -0.23
CSPG4-201ENST00000308508 SLC18A2Q05940 514 aa13.64□□□□□ -0.23
CSPG4-201ENST00000308508 FSTL4Q6MZW2 842 aa13.64□□□□□ -0.23
CSPG4-201ENST00000308508 NCCRP1Q6ZVX7 275 aaPredicted RBP13.64□□□□□ -0.23
CSPG4-201ENST00000308508 LINC00116Q8NCU8 138 aa13.64□□□□□ -0.23
CSPG4-201ENST00000308508 SLC7A6OSQ96CW6 309 aaPredicted RBP13.64□□□□□ -0.23
CSPG4-201ENST00000308508 GPR21Q99679 349 aa13.64□□□□□ -0.23
CSPG4-201ENST00000308508 PCBD2Q9H0N5 130 aa13.64□□□□□ -0.23
CSPG4-201ENST00000308508 KCNMB3Q9NPA1 279 aa13.64□□□□□ -0.23
CSPG4-201ENST00000308508 TCAF2A6NFQ2 919 aa13.64□□□□□ -0.23
CSPG4-201ENST00000308508 GMFGO60234 142 aa13.64□□□□□ -0.23
CSPG4-201ENST00000308508 CLCN7P51798 805 aa13.64□□□□□ -0.23
CSPG4-201ENST00000308508 CASP9P55211 416 aa13.64□□□□□ -0.23
CSPG4-201ENST00000308508 FCRL2Q96LA5 508 aaPredicted RBP13.64□□□□□ -0.23
CSPG4-201ENST00000308508 PRMT6Q96LA8 375 aaPredicted RBP13.64□□□□□ -0.23
CSPG4-201ENST00000308508 PIP5K1BO14986 540 aa13.64□□□□□ -0.23
CSPG4-201ENST00000308508 RAB5BP61020 215 aa13.64□□□□□ -0.23
CSPG4-201ENST00000308508 COPS7AQ9UBW8 275 aa13.64□□□□□ -0.23
CSPG4-201ENST00000308508 MYH11P35749 1972 aa13.64□□□□□ -0.23
CSPG4-201ENST00000308508 UBXN7O94888 489 aa13.63□□□□□ -0.23
CSPG4-201ENST00000308508 SPARCP09486 303 aa13.63□□□□□ -0.23
CSPG4-201ENST00000308508 DNASE1L3Q13609 305 aa13.63□□□□□ -0.23
CSPG4-201ENST00000308508 CRB2Q5IJ48 1285 aa13.63□□□□□ -0.23
CSPG4-201ENST00000308508 PRPF38BQ5VTL8 546 aaKnown RBP13.63□□□□□ -0.23
CSPG4-201ENST00000308508 ZNF676Q8N7Q3 588 aa13.63□□□□□ -0.23
CSPG4-201ENST00000308508 OR2B2Q9GZK3 357 aa13.63□□□□□ -0.23
CSPG4-201ENST00000308508 A0A1W2PQ67 120 aa13.63□□□□□ -0.23
CSPG4-201ENST00000308508 PGDP52209 483 aa13.63□□□□□ -0.23
CSPG4-201ENST00000308508 LRRN4Q8WUT4 740 aa13.63□□□□□ -0.23
CSPG4-201ENST00000308508 HSPBAP1Q96EW2 488 aa13.63□□□□□ -0.23
CSPG4-201ENST00000308508 CD93Q9NPY3 652 aa13.63□□□□□ -0.23
CSPG4-201ENST00000308508 CLCA1A8K7I4 914 aa13.63□□□□□ -0.23
CSPG4-201ENST00000308508 VNN2O95498 520 aa13.63□□□□□ -0.23
CSPG4-201ENST00000308508 ALPPP05187 535 aa13.63□□□□□ -0.23
CSPG4-201ENST00000308508 GADD45AP24522 165 aa13.63□□□□□ -0.23
CSPG4-201ENST00000308508 CMPK1P30085 196 aa13.63□□□□□ -0.23
CSPG4-201ENST00000308508 RYKP34925 604 aa13.63□□□□□ -0.23
CSPG4-201ENST00000308508 HSPA7P48741 367 aa13.63□□□□□ -0.23
CSPG4-201ENST00000308508 SAMD14Q8IZD0 417 aaPredicted RBP13.63□□□□□ -0.23
CSPG4-201ENST00000308508 SLC35G5Q96KT7 338 aa13.63□□□□□ -0.23
CSPG4-201ENST00000308508 ADAM2Q99965 735 aa13.63□□□□□ -0.23
CSPG4-201ENST00000308508 EBPLQ9BY08 206 aa13.63□□□□□ -0.23
CSPG4-201ENST00000308508 CNTNAP4Q9C0A0 1308 aa13.63□□□□□ -0.23
CSPG4-201ENST00000308508 EPHB6O15197 1021 aa13.63□□□□□ -0.23
CSPG4-201ENST00000308508 C8GP07360 202 aa13.63□□□□□ -0.23
CSPG4-201ENST00000308508 GSTM3P21266 225 aa13.63□□□□□ -0.23
CSPG4-201ENST00000308508 VAMP1P23763 118 aa13.63□□□□□ -0.23
CSPG4-201ENST00000308508 MASP1P48740 699 aa13.63□□□□□ -0.23
CSPG4-201ENST00000308508 MLLT6P55198 1093 aaPredicted RBP13.63□□□□□ -0.23
CSPG4-201ENST00000308508 ASTE1Q2TB18 679 aaPredicted RBP13.63□□□□□ -0.23
CSPG4-201ENST00000308508 KIAA1324Q6UXG2 1013 aaKnown RBP13.63□□□□□ -0.23
CSPG4-201ENST00000308508 S100A16Q96FQ6 103 aaKnown RBP13.63□□□□□ -0.23
CSPG4-201ENST00000308508 BTN2A3PQ96KV6 586 aa13.63□□□□□ -0.23
CSPG4-201ENST00000308508 CSPG4P5Q96PW8 444 aa13.63□□□□□ -0.23
CSPG4-201ENST00000308508 TCRBV5S4A2TA0A5A2 114 aa13.63□□□□□ -0.23
CSPG4-201ENST00000308508 KLRK1P26718 216 aa13.63□□□□□ -0.23
CSPG4-201ENST00000308508 PSMA6P60900 246 aaKnown RBP13.63□□□□□ -0.23
CSPG4-201ENST00000308508 LINC00471Q8N535 108 aa13.63□□□□□ -0.23
CSPG4-201ENST00000308508 FAM156AQ8NDB6 213 aa13.63□□□□□ -0.23
CSPG4-201ENST00000308508 ATP6V1C2Q8NEY4 427 aa13.63□□□□□ -0.23
CSPG4-201ENST00000308508 OR10G2Q8NGC3 310 aa13.63□□□□□ -0.23
CSPG4-201ENST00000308508 TCEAL4Q96EI5 215 aa13.63□□□□□ -0.23
CSPG4-201ENST00000308508 GAL3ST1Q99999 423 aa13.63□□□□□ -0.23
CSPG4-201ENST00000308508 CNTN6Q9UQ52 1028 aa13.63□□□□□ -0.23
CSPG4-201ENST00000308508 ZNF451Q9Y4E5 1061 aa13.63□□□□□ -0.23
CSPG4-201ENST00000308508 NDST3O95803 873 aa13.63□□□□□ -0.23
CSPG4-201ENST00000308508 HSD3B1P14060 373 aa13.63□□□□□ -0.23
CSPG4-201ENST00000308508 BTBD16Q32M84 506 aa13.63□□□□□ -0.23
CSPG4-201ENST00000308508 COX18Q8N8Q8 333 aa13.63□□□□□ -0.23
CSPG4-201ENST00000308508 METTL21AQ8WXB1 218 aa13.63□□□□□ -0.23
CSPG4-201ENST00000308508 NKD2Q969F2 451 aaPredicted RBP13.63□□□□□ -0.23
CSPG4-201ENST00000308508 MSANTD3Q96H12 275 aa13.63□□□□□ -0.23
CSPG4-201ENST00000308508 CCDC120Q96HB5 630 aa13.63□□□□□ -0.23
CSPG4-201ENST00000308508 ADH1CP00326 375 aa13.63□□□□□ -0.23
CSPG4-201ENST00000308508 AKR1A1P14550 325 aa13.63□□□□□ -0.23
CSPG4-201ENST00000308508 ZACNQ401N2 412 aa13.63□□□□□ -0.23
CSPG4-201ENST00000308508 LRRC52Q8N7C0 313 aa13.63□□□□□ -0.23
CSPG4-201ENST00000308508 ZNF420Q8TAQ5 688 aaPredicted RBP13.63□□□□□ -0.23
CSPG4-201ENST00000308508 ZNF717Q9BY31 904 aaPredicted RBP13.63□□□□□ -0.23
CSPG4-201ENST00000308508 USP29Q9HBJ7 922 aa13.63□□□□□ -0.23
CSPG4-201ENST00000308508 CFAP97Q9P2B7 532 aa13.63□□□□□ -0.23
CSPG4-201ENST00000308508 OAZ3Q9UMX2 235 aa13.63□□□□□ -0.23
CSPG4-201ENST00000308508 RUVBL1Q9Y265 456 aaKnown RBP13.63□□□□□ -0.23
CSPG4-201ENST00000308508 DISP2A7MBM2 1401 aa13.62□□□□□ -0.23
CSPG4-201ENST00000308508 LOC100130705A0A1B0GUX0 176 aa13.62□□□□□ -0.23
CSPG4-201ENST00000308508 C13orf42A0A1B0GVH6 325 aa13.62□□□□□ -0.23
CSPG4-201ENST00000308508 ZNF878C9JN71 531 aa13.62□□□□□ -0.23
CSPG4-201ENST00000308508 PCDHGA12O60330 932 aa13.62□□□□□ -0.23
Retrieved 100 of 20,778 RNA–protein pairs in 25.6 ms