RNA–Protein interactions for RNA: ENST00000299138.11

VPS35-201, Transcript of VPS35, retromer complex component, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS35, Length 6,790 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-201ENST00000299138 SEC14L2O76054 403 aa6.3□□□□□ -1.4
VPS35-201ENST00000299138 SERPINF2P08697 491 aa6.3□□□□□ -1.4
VPS35-201ENST00000299138 UGT1A6P19224 532 aa6.3□□□□□ -1.4
VPS35-201ENST00000299138 UGT1A1P22309 533 aa6.3□□□□□ -1.4
VPS35-201ENST00000299138 UGT1A4P22310 534 aa6.3□□□□□ -1.4
VPS35-201ENST00000299138 EPHA3P29320 983 aa6.3□□□□□ -1.4
VPS35-201ENST00000299138 UGT1A3P35503 534 aa6.3□□□□□ -1.4
VPS35-201ENST00000299138 UGT1A5P35504 534 aa6.3□□□□□ -1.4
VPS35-201ENST00000299138 MAGEB1P43366 347 aa6.3□□□□□ -1.4
VPS35-201ENST00000299138 ABCG1P45844 678 aa6.3□□□□□ -1.4
VPS35-201ENST00000299138 ENTPD1P49961 510 aa6.3□□□□□ -1.4
VPS35-201ENST00000299138 PPP5CP53041 499 aa6.3□□□□□ -1.4
VPS35-201ENST00000299138 YBEYP58557 167 aaPredicted RBP6.3□□□□□ -1.4
VPS35-201ENST00000299138 ERVK-8P63133 956 aa6.3□□□□□ -1.4
VPS35-201ENST00000299138 RNF4P78317 190 aa6.3□□□□□ -1.4
VPS35-201ENST00000299138 GAD2Q05329 585 aa6.3□□□□□ -1.4
VPS35-201ENST00000299138 BIKQ13323 160 aa6.3□□□□□ -1.4
VPS35-201ENST00000299138 NR6A1Q15406 480 aa6.3□□□□□ -1.4
VPS35-201ENST00000299138 C21orf62-AS1Q17RA5 79 aa6.3□□□□□ -1.4
VPS35-201ENST00000299138 CARD16Q5EG05 197 aa6.3□□□□□ -1.4
VPS35-201ENST00000299138 C7orf57Q8NEG2 295 aa6.3□□□□□ -1.4
VPS35-201ENST00000299138 P2RX7Q99572 595 aaKnown RBP6.3□□□□□ -1.4
VPS35-201ENST00000299138 SEZ6LQ9BYH1 1024 aa6.3□□□□□ -1.4
VPS35-201ENST00000299138 UGT1A7Q9HAW7 530 aa6.3□□□□□ -1.4
VPS35-201ENST00000299138 UGT1A10Q9HAW8 530 aa6.3□□□□□ -1.4
VPS35-201ENST00000299138 UGT1A8Q9HAW9 530 aa6.3□□□□□ -1.4
VPS35-201ENST00000299138 FZD10Q9ULW2 581 aa6.3□□□□□ -1.4
VPS35-201ENST00000299138 VWA7Q9Y334 891 aa6.3□□□□□ -1.4
VPS35-201ENST00000299138 XIRP1Q702N8 1843 aaKnown RBP6.3□□□□□ -1.4
VPS35-201ENST00000299138 DISC1C4P0D8 188 aa6.3□□□□□ -1.4
VPS35-201ENST00000299138 RGS13O14921 159 aa6.3□□□□□ -1.4
VPS35-201ENST00000299138 POLR1CO15160 346 aaPredicted RBP6.3□□□□□ -1.4
VPS35-201ENST00000299138 PQBP1O60828 265 aaKnown RBP6.3□□□□□ -1.4
VPS35-201ENST00000299138 BCAS1O75363 584 aaPredicted RBP6.3□□□□□ -1.4
VPS35-201ENST00000299138 EEDO75530 441 aaKnown RBP6.3□□□□□ -1.4
VPS35-201ENST00000299138 YES1P07947 543 aa6.3□□□□□ -1.4
VPS35-201ENST00000299138 PBLDP30039 288 aaPredicted RBP6.3□□□□□ -1.4
VPS35-201ENST00000299138 IFNGR2P38484 337 aa6.3□□□□□ -1.4
VPS35-201ENST00000299138 HNF4AP41235 474 aa6.3□□□□□ -1.4
VPS35-201ENST00000299138 GMPSP49915 693 aaPredicted RBP6.3□□□□□ -1.4
VPS35-201ENST00000299138 DEFA6Q01524 100 aa6.3□□□□□ -1.4
VPS35-201ENST00000299138 SCN1BQ07699 218 aa6.3□□□□□ -1.4
VPS35-201ENST00000299138 TWF1Q12792 350 aa6.3□□□□□ -1.4
VPS35-201ENST00000299138 NAE1Q13564 534 aa6.3□□□□□ -1.4
VPS35-201ENST00000299138 SNAPC1Q16533 368 aa6.3□□□□□ -1.4
VPS35-201ENST00000299138 UGCGQ16739 394 aa6.3□□□□□ -1.4
VPS35-201ENST00000299138 TMEM53Q6P2H8 277 aa6.3□□□□□ -1.4
VPS35-201ENST00000299138 TRIM40Q6P9F5 258 aa6.3□□□□□ -1.4
VPS35-201ENST00000299138 GALNT12Q8IXK2 581 aa6.3□□□□□ -1.4
VPS35-201ENST00000299138 PELI3Q8N2H9 469 aa6.3□□□□□ -1.4
VPS35-201ENST00000299138 C1orf52Q8N6N3 182 aaKnown RBP6.3□□□□□ -1.4
VPS35-201ENST00000299138 KIF12Q96FN5 646 aa6.3□□□□□ -1.4
VPS35-201ENST00000299138 TSNAXQ99598 290 aaKnown RBP6.3□□□□□ -1.4
VPS35-201ENST00000299138 GLOD4Q9HC38 313 aa6.3□□□□□ -1.4
VPS35-201ENST00000299138 PRMT8Q9NR22 394 aaPredicted RBP6.3□□□□□ -1.4
VPS35-201ENST00000299138 TAS2R3Q9NYW6 316 aa6.3□□□□□ -1.4
VPS35-201ENST00000299138 PSMD9O00233 223 aa6.3□□□□□ -1.4
VPS35-201ENST00000299138 HSPA12AO43301 675 aa6.3□□□□□ -1.4
VPS35-201ENST00000299138 DYRK3O43781 588 aa6.3□□□□□ -1.4
VPS35-201ENST00000299138 DPM1O60762 260 aa6.3□□□□□ -1.4
VPS35-201ENST00000299138 RPL3P39023 403 aaKnown RBP6.3□□□□□ -1.4
VPS35-201ENST00000299138 EIF2DP41214 584 aaKnown RBP6.3□□□□□ -1.4
VPS35-201ENST00000299138 GALK2Q01415 458 aa6.3□□□□□ -1.4
VPS35-201ENST00000299138 CLPPQ16740 277 aaPredicted RBP6.3□□□□□ -1.4
VPS35-201ENST00000299138 DCST2Q5T1A1 773 aa6.3□□□□□ -1.4
VPS35-201ENST00000299138 ADAMTSL2Q86TH1 951 aa6.3□□□□□ -1.4
VPS35-201ENST00000299138 WDTC1Q8N5D0 677 aa6.3□□□□□ -1.4
VPS35-201ENST00000299138 ATP6V0D2Q8N8Y2 350 aa6.3□□□□□ -1.4
VPS35-201ENST00000299138 ZNF431Q8TF32 576 aaPredicted RBP6.3□□□□□ -1.4
VPS35-201ENST00000299138 NPY6RQ99463 290 aa6.3□□□□□ -1.4
VPS35-201ENST00000299138 UQCC2Q9BRT2 126 aa6.3□□□□□ -1.4
VPS35-201ENST00000299138 DPY30Q9C005 99 aa6.3□□□□□ -1.4
VPS35-201ENST00000299138 TMEM39BQ9GZU3 492 aa6.3□□□□□ -1.4
VPS35-201ENST00000299138 SLC25A51Q9H1U9 297 aa6.3□□□□□ -1.4
VPS35-201ENST00000299138 RGCCQ9H4X1 137 aa6.3□□□□□ -1.4
VPS35-201ENST00000299138 MTPAPQ9NVV4 582 aaKnown RBP eCLIP6.3□□□□□ -1.4
VPS35-201ENST00000299138 INVSQ9Y283 1065 aa6.3□□□□□ -1.4
VPS35-201ENST00000299138 BAZ2AQ9UIF9 1905 aaKnown RBP6.29□□□□□ -1.4
VPS35-201ENST00000299138 SGCEO43556 437 aa6.29□□□□□ -1.4
VPS35-201ENST00000299138 FARS2O95363 451 aaKnown RBP6.29□□□□□ -1.4
VPS35-201ENST00000299138 S100PP25815 95 aa6.29□□□□□ -1.4
VPS35-201ENST00000299138 PPM1AP35813 382 aa6.29□□□□□ -1.4
VPS35-201ENST00000299138 CCR4P51679 360 aa6.29□□□□□ -1.4
VPS35-201ENST00000299138 CDH4P55283 916 aa6.29□□□□□ -1.4
VPS35-201ENST00000299138 AP3S2P59780 193 aa6.29□□□□□ -1.4
VPS35-201ENST00000299138 HERVK_113P63132 956 aa6.29□□□□□ -1.4
VPS35-201ENST00000299138 KCNC4Q03721 635 aa6.29□□□□□ -1.4
VPS35-201ENST00000299138 CXCL9Q07325 125 aa6.29□□□□□ -1.4
VPS35-201ENST00000299138 CCNJQ5T5M9 372 aa6.29□□□□□ -1.4
VPS35-201ENST00000299138 NCBP2-AS2Q69YL0 99 aa6.29□□□□□ -1.4
VPS35-201ENST00000299138 ALKBH2Q6NS38 261 aa6.29□□□□□ -1.4
VPS35-201ENST00000299138 TRMT10BQ6PF06 316 aaKnown RBP6.29□□□□□ -1.4
VPS35-201ENST00000299138 TAS1R3Q7RTX0 852 aa6.29□□□□□ -1.4
VPS35-201ENST00000299138 SLC34A3Q8N130 599 aa6.29□□□□□ -1.4
VPS35-201ENST00000299138 SDR16C5Q8N3Y7 309 aa6.29□□□□□ -1.4
VPS35-201ENST00000299138 C1orf127Q8N9H9 656 aa6.29□□□□□ -1.4
VPS35-201ENST00000299138 MTFMTQ96DP5 389 aaKnown RBP6.29□□□□□ -1.4
VPS35-201ENST00000299138 SLC2A13Q96QE2 648 aa6.29□□□□□ -1.4
VPS35-201ENST00000299138 CDK5RAP1Q96SZ6 601 aaKnown RBP6.29□□□□□ -1.4
VPS35-201ENST00000299138 AGAP2Q99490 1192 aa6.29□□□□□ -1.4
Retrieved 100 of 20,778 RNA–protein pairs in 27.8 ms