RNA–Protein interactions for RNA: ENST00000263630.12

CCDC88A-201, Transcript of coiled-coil domain containing 88A, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene CCDC88A, Length 9,667 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-201ENST00000263630 CORO1BQ9BR76 489 aa13.71□□□□□ -0.21
CCDC88A-201ENST00000263630 GPR89AB7ZAQ6 455 aa13.71□□□□□ -0.21
CCDC88A-201ENST00000263630 IFNA17P01571 189 aa13.71□□□□□ -0.21
CCDC88A-201ENST00000263630 GPR89BP0CG08 455 aa13.71□□□□□ -0.21
CCDC88A-201ENST00000263630 BACE1P56817 501 aa13.71□□□□□ -0.21
CCDC88A-201ENST00000263630 C3P1Q6ZMU1 363 aa13.71□□□□□ -0.21
CCDC88A-201ENST00000263630 ACBD4Q8NC06 268 aa13.71□□□□□ -0.21
CCDC88A-201ENST00000263630 OR56B2PQ8NGI1 322 aa13.71□□□□□ -0.21
CCDC88A-201ENST00000263630 DENND1AQ8TEH3 1009 aa13.71□□□□□ -0.21
CCDC88A-201ENST00000263630 TATDN2Q93075 761 aa13.71□□□□□ -0.21
CCDC88A-201ENST00000263630 HDAC10Q969S8 669 aa13.71□□□□□ -0.21
CCDC88A-201ENST00000263630 RHOJQ9H4E5 214 aa13.71□□□□□ -0.21
CCDC88A-201ENST00000263630 LDAHQ9H6V9 325 aa13.71□□□□□ -0.21
CCDC88A-201ENST00000263630 TAS2R1Q9NYW7 299 aa13.71□□□□□ -0.21
CCDC88A-201ENST00000263630 NPIPA5E9PKD4 350 aa13.71□□□□□ -0.22
CCDC88A-201ENST00000263630 APODP05090 189 aa13.71□□□□□ -0.22
CCDC88A-201ENST00000263630 TSPAN8P19075 237 aa13.71□□□□□ -0.22
CCDC88A-201ENST00000263630 YAP1P46937 504 aaKnown RBP13.71□□□□□ -0.22
CCDC88A-201ENST00000263630 TAS2R43P59537 309 aa13.71□□□□□ -0.22
CCDC88A-201ENST00000263630 KCNJ2P63252 427 aa13.71□□□□□ -0.22
CCDC88A-201ENST00000263630 OGFOD2Q6N063 350 aa13.71□□□□□ -0.22
CCDC88A-201ENST00000263630 YIPF7Q8N8F6 280 aa13.71□□□□□ -0.22
CCDC88A-201ENST00000263630 ADAD1Q96M93 576 aaKnown RBP13.71□□□□□ -0.22
CCDC88A-201ENST00000263630 PCDHB18PQ96TA0 734 aa13.71□□□□□ -0.22
CCDC88A-201ENST00000263630 GAL3ST1Q99999 423 aa13.71□□□□□ -0.22
CCDC88A-201ENST00000263630 RAB21Q9UL25 225 aa13.71□□□□□ -0.22
CCDC88A-201ENST00000263630 NPIPA1Q9UND3 350 aa13.71□□□□□ -0.22
CCDC88A-201ENST00000263630 LRRC38Q5VT99 294 aa13.71□□□□□ -0.22
CCDC88A-201ENST00000263630 TCTEX1D2Q8WW35 142 aa13.71□□□□□ -0.22
CCDC88A-201ENST00000263630 TMLHEQ9NVH6 421 aa13.71□□□□□ -0.22
CCDC88A-201ENST00000263630 RIDAP52758 137 aaKnown RBP13.71□□□□□ -0.22
CCDC88A-201ENST00000263630 SKA3Q8IX90 412 aa13.71□□□□□ -0.22
CCDC88A-201ENST00000263630 FCAMRQ8WWV6 532 aa13.71□□□□□ -0.22
CCDC88A-201ENST00000263630 ZNF558Q96NG5 402 aa13.71□□□□□ -0.22
CCDC88A-201ENST00000263630 TM6SF2Q9BZW4 377 aa13.71□□□□□ -0.22
CCDC88A-201ENST00000263630 C12orf65Q9H3J6 166 aaKnown RBP13.71□□□□□ -0.22
CCDC88A-201ENST00000263630 CD320Q9NPF0 282 aa13.71□□□□□ -0.22
CCDC88A-201ENST00000263630 CD93Q9NPY3 652 aa13.71□□□□□ -0.22
CCDC88A-201ENST00000263630 UGGT1Q9NYU2 1555 aa13.7□□□□□ -0.22
CCDC88A-201ENST00000263630 ITPKAP23677 461 aa13.7□□□□□ -0.22
CCDC88A-201ENST00000263630 CRHR1P34998 444 aa13.7□□□□□ -0.22
CCDC88A-201ENST00000263630 TRMT2AQ8IZ69 625 aaKnown RBP13.7□□□□□ -0.22
CCDC88A-201ENST00000263630 C22orf15Q8WYQ4 148 aa13.7□□□□□ -0.22
CCDC88A-201ENST00000263630 SLC38A3Q99624 504 aa13.7□□□□□ -0.22
CCDC88A-201ENST00000263630 TMPRSS4Q9NRS4 437 aa13.7□□□□□ -0.22
CCDC88A-201ENST00000263630 GTF2F2P13984 249 aa13.7□□□□□ -0.22
CCDC88A-201ENST00000263630 GSTM3P21266 225 aa13.7□□□□□ -0.22
CCDC88A-201ENST00000263630 TDGQ13569 410 aa13.7□□□□□ -0.22
CCDC88A-201ENST00000263630 ZNF773Q6PK81 442 aa13.7□□□□□ -0.22
CCDC88A-201ENST00000263630 MYO19Q96H55 970 aa13.7□□□□□ -0.22
CCDC88A-201ENST00000263630 TUBA1CQ9BQE3 449 aa13.7□□□□□ -0.22
CCDC88A-201ENST00000263630 SPON1Q9HCB6 807 aa13.7□□□□□ -0.22
CCDC88A-201ENST00000263630 RUVBL1Q9Y265 456 aaKnown RBP13.7□□□□□ -0.22
CCDC88A-201ENST00000263630 LACTBL1A8MY62 500 aa13.7□□□□□ -0.22
CCDC88A-201ENST00000263630 STK16O75716 305 aa13.7□□□□□ -0.22
CCDC88A-201ENST00000263630 ANXA4P09525 319 aaPredicted RBP13.7□□□□□ -0.22
CCDC88A-201ENST00000263630 ENPP2Q13822 863 aa13.7□□□□□ -0.22
CCDC88A-201ENST00000263630 KCTD9Q7L273 389 aa13.7□□□□□ -0.22
CCDC88A-201ENST00000263630 CHPT1Q8WUD6 406 aa13.7□□□□□ -0.22
CCDC88A-201ENST00000263630 C5orf60A6NFR6 353 aa13.7□□□□□ -0.22
CCDC88A-201ENST00000263630 CDK2P24941 298 aa13.7□□□□□ -0.22
CCDC88A-201ENST00000263630 CDH12P55289 794 aa13.7□□□□□ -0.22
CCDC88A-201ENST00000263630 PLGLB1Q02325 96 aa13.7□□□□□ -0.22
CCDC88A-201ENST00000263630 GRB10Q13322 594 aa13.7□□□□□ -0.22
CCDC88A-201ENST00000263630 CARD16Q5EG05 197 aa13.7□□□□□ -0.22
CCDC88A-201ENST00000263630 ZNF808Q8N4W9 903 aaPredicted RBP13.7□□□□□ -0.22
CCDC88A-201ENST00000263630 ELP5Q8TE02 316 aa13.7□□□□□ -0.22
CCDC88A-201ENST00000263630 SMPDL3BQ92485 455 aa13.7□□□□□ -0.22
CCDC88A-201ENST00000263630 ORAI3Q9BRQ5 295 aa13.7□□□□□ -0.22
CCDC88A-201ENST00000263630 KBTBD4Q9NVX7 518 aa13.7□□□□□ -0.22
CCDC88A-201ENST00000263630 CLN5O75503 358 aa13.7□□□□□ -0.22
CCDC88A-201ENST00000263630 RAD51DO75771 328 aa13.7□□□□□ -0.22
CCDC88A-201ENST00000263630 RYKP34925 604 aa13.7□□□□□ -0.22
CCDC88A-201ENST00000263630 TROAPQ12815 778 aa13.7□□□□□ -0.22
CCDC88A-201ENST00000263630 HSPB3Q12988 150 aa13.7□□□□□ -0.22
CCDC88A-201ENST00000263630 SLC8B1Q6J4K2 584 aa13.7□□□□□ -0.22
CCDC88A-201ENST00000263630 AGBL3Q8NEM8 1001 aa13.7□□□□□ -0.22
CCDC88A-201ENST00000263630 SLC35G5Q96KT7 338 aa13.7□□□□□ -0.22
CCDC88A-201ENST00000263630 OR14A2Q96R54 314 aa13.7□□□□□ -0.22
CCDC88A-201ENST00000263630 CALCAP01258 141 aa13.7□□□□□ -0.22
CCDC88A-201ENST00000263630 SLC29A4Q7RTT9 530 aa13.7□□□□□ -0.22
CCDC88A-201ENST00000263630 IFNL1Q8IU54 200 aa13.7□□□□□ -0.22
CCDC88A-201ENST00000263630 LNX2Q8N448 690 aa13.7□□□□□ -0.22
CCDC88A-201ENST00000263630 ATP6AP2O75787 350 aa13.7□□□□□ -0.22
CCDC88A-201ENST00000263630 PIM1P11309 404 aaPredicted RBP13.7□□□□□ -0.22
CCDC88A-201ENST00000263630 SLC15A1P46059 708 aa13.7□□□□□ -0.22
CCDC88A-201ENST00000263630 SMSP52788 366 aa13.7□□□□□ -0.22
CCDC88A-201ENST00000263630 RAB31Q13636 194 aa13.7□□□□□ -0.22
CCDC88A-201ENST00000263630 CERS6Q6ZMG9 384 aa13.7□□□□□ -0.22
CCDC88A-201ENST00000263630 C3orf67Q6ZVT6 689 aa13.7□□□□□ -0.22
CCDC88A-201ENST00000263630 HSFY1Q96LI6 401 aa13.7□□□□□ -0.22
CCDC88A-201ENST00000263630 KCNS2Q9ULS6 477 aa13.7□□□□□ -0.22
CCDC88A-201ENST00000263630 C9J4A7 227 aa13.69□□□□□ -0.22
CCDC88A-201ENST00000263630 TGM6O95932 706 aa13.69□□□□□ -0.22
CCDC88A-201ENST00000263630 MAGEA3P43357 314 aa13.69□□□□□ -0.22
CCDC88A-201ENST00000263630 TRAM1Q15629 374 aa13.69□□□□□ -0.22
CCDC88A-201ENST00000263630 FTMTQ8N4E7 242 aa13.69□□□□□ -0.22
CCDC88A-201ENST00000263630 ZBTB2Q8N680 514 aa13.69□□□□□ -0.22
CCDC88A-201ENST00000263630 COPS5Q92905 334 aa13.69□□□□□ -0.22
CCDC88A-201ENST00000263630 AGAP2Q99490 1192 aa13.69□□□□□ -0.22
Retrieved 100 of 20,778 RNA–protein pairs in 76.2 ms